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Cancer of Colon

Cancer of the Colon is a type of malignant tumor that originates in the large intestine, also known as the colon.
It is a common form of cancer that can develop from precancerous polyps or growths within the colon.
Early detection and treatment are crucial, as colon cancer is often curable if caught early.
Symtpoms may include changes in bowel habits, rectal bleeding, abdominal pain, and unexplained weight loss.
Risk factors include age, family history, diet, and lifestyle factors.
Effective management often involves a combination of surgical resection, chemotherapy, and/or radiation therapy.
Ongoing research aims to improve understanding of the disease's biology and develop more targeted, effective treatments for patients.

Most cited protocols related to «Cancer of Colon»

We benchmarked CIBERSORT against six GEP deconvolution methods (RLR and five others4 (link)–8 (link)) by comparing their results on mixtures with different levels of unknown content (i.e., tumor) and noise. To facilitate a fair comparison, we used previously defined in vitro mixtures (n = 12) of four blood cell lines (GSE11103), each of which is highly distinct and readily deconvolved (Supplementary Fig. 4a). To evaluate expression-based methods, we used a signature matrix with nearly 600 distinguishing genes (described above and applied in Supplementary Fig. 4a), whereas for marker-based deconvolution, we selected marker genes as described above (n = 500 genes). To simulate tumors with infiltrating leukocytes, we combined the cell line mixtures with defined inputs of a GEP from a colon cancer cell line (HCT116), calculated as the mean of two replicate arrays (GSM269529 and GSM269530; GSE10650). Both GSE11003 and GSE10650 datasets were MAS5 and quantile normalized together prior to analysis. To introduce noise, we added values randomly sampled from the following distribution, 2^N(0, f × σ), with f in the range [0,1) (i.e., y-axis in Fig. 2a and Supplementary Fig. 5a), and σ set to the global standard deviation across the original mixtures represented in log2 space (=11.6). Since GSE11103 consists of four distinct mixtures with three replicates each, we measured the performance of each algorithm over the entire set of 12 mixtures (R and RMSE; Supplementary Fig. 5, Supplementary Table 4). Moreover, we independently iterated over tumor content (0% to <100%) and noise (f, [0,1)) in 30 regularly spaced intervals, such that together, 900 sets of mixtures were analyzed.
Publication 2015
BLOOD Cancer of Colon Cell Lines DNA Replication Epistropheus Genes Genes, vif Genetic Markers Leukocytes Neoplasms
Guide RNA expression vectors with the improved scaffold, pKLV2-U6gRNA5(BbsI)-PKGpuro2ABFP-W and pKLV2.2-h7SKgRNA5(SapI)-U6gRNA5(BbsI)-PGKpruo2ABFP-W, for a single and dual gRNA expression, respectively, were generated in this study and have been deposited with Addgene. The optimized human and murine CRISPR libraries were also available through Addgene. Guide RNA sequences used in a gene-by-gene approach are listed in Table S6. All AML cell lines (MOLM-13, MV4-11, HL-60, OCI-AML2, and OCI-AML3), colon cancer cell line HT-29, and fibrosarcoma cell line HT-1080 were obtained from the Sanger Institute Cancer Cell Line Panel and were mycoplasma free. Cas9-expressing cell lines were generated by lentiviral transduction using pKLV2-EF1aBsd2ACas9-W, and Cas9 activity in individual subclones was tested using a lentiviral reporter pKLV2-U6gRNA(gGFP)-PGKBFP2AGFP-W. A Cas9-expressing mouse line was generated by inserting the human EF1a promoter-driven Cas9 expression cassette into the Rosa26 locus in mouse ESC line JM8 (Pettitt et al., 2009 (link)) and is kept in the C57BL/6N background. See also Supplemental Information. All animal studies were carried out in accordance with the Animals (Scientific Procedures) Act 1986 (UK) and approved by the Ethics Committee at the Sanger Institute.
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Publication 2016
Animals Cancer of Colon Cell Lines Cloning Vectors Clustered Regularly Interspaced Short Palindromic Repeats Ethics Committees Fibrosarcoma Genes Homo sapiens HT29 Cells Malignant Neoplasms Mus Mycoplasma RNA Sequence Transcription, Genetic
The Ontario methylation data have been deposited in dbGAP under accession number [phs000779.v1.p1]. These data were available to researchers under the following constraints: (1) the use of the data is limited to research on cancer, (2) the researchers have local Institutional Review Board approval and (3) the researchers have the approval of either Colon Cancer Family Registries [54 ] or Mount Sinai Hospital (Toronto) Research Ethics Board. The TCGA data (KIRC and AML) are available through the TCGA Data Portal [55 ]. The WGBS EBV data is available through the Gene Expression Omnibus of the National Center for Biotechnology Information under the accession number [GEO:GSE49629]. Our method is available as the preprocessFunnorm function in the minfi package through the Bioconductor project [56 ]. The code in this package is licensed under the open-source license Artistic-2.0.
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Publication 2014
Cancer of Colon Ethics Committees, Research Gene Expression Malignant Neoplasms Methylation

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Publication 2022
Adenocarcinoma of Lung Brain Neoplasm, Malignant Cancer of Colon Endometrial Carcinoma Hypernephroid Carcinomas Malignant Neoplasm of Breast Mass Spectrometry Neoplasms Ovarian Cancer Proteins
Twenty-seven colon cancer cell lines were initially included in the present study. HCT-116, HCT-15, LoVo, RKO, SW1116, SW48, SW620, SW948, NCI-H508 and WiDr were purchased from the American Type Culture Collection (ATCC, Manassas, VA, USA). ALA, CaCo-2, CO-115, COLO 320, DLD-1, EB, FRI, HT-29, IS1, IS2, IS3, LS1034, LS-174T, TC7, TC71, SW480 and V9P were kindly provided by collaborators. Cell lines were cultured in medium with added fetal bovine serum, glutamine, penicillin and streptomycin, and were maintained in humidified 37 °C 5% CO2 incubators as described in Supplementary Table 2. Before collection, cultures were tested for mycoplasma infection using Myco Alert (Lonza, Walkersville, MD, USA) according to the manufacturer's protocol.
DNA was isolated using either a standard phenol/chloroform procedure, or a magnetic beads approach (the Maxwell 16 DNA Purification kits, Promega Corporation, Madison, WI, USA, and MagAttract DNA Mini M48 kit, Qiagen Inc., Valencia, CA, USA). DNA was STR profiled using the AmpFLSTR Identifiler PCR Amplification Kit (Life Technologies, Carlsbad, CA, USA). Resulting cancer cell line STR profiles were cross-compared and, where available, matched with the ATCC's and German Collection of Microorganisms and Cell cultures' (Braunschweig, Germany) online databases. Hierarchical clustering of STR data was performed using Euclidian distances and average linkage clustering in Partek Genomics Suite 6.6 (Partek Inc., St Louis, MO, USA; Figure 2). ALA, CO-115, EB, FRI, IS1, IS2, IS3, TC7, TC71 and V9P are non-commercial cell lines and their STR profiles will be provided upon request. Three of the 27 cancer cell lines were found to be misclassified. ALA and IS2 had identical profiles to SW480/SW620 and LS1034, respectively. TC7 had a STR profile incompatible with its origin as a Caco-2 subclone.41 Consequently, ALA, IS2 and TC7 were excluded from further analysis.
Micrographs of live cell cultures were captured with an Eclipse TS100 microscope equipped with a × 10 phase-contrast objective using accompanying NIS-Elements F Package 2.21 software (all from Nikon, Tokyo, Japan). Resulting images were imported into Photoshop CS4 (Adobe Systems, Mountain View, CA, USA), cropped and color matched.
Publication 2013
Cancer of Colon Cell Culture Techniques Cell Lines Chloroform Fetal Bovine Serum Glutamine HT29 Cells Malignant Neoplasms Microscopy Microscopy, Phase-Contrast Mycoplasma Infections Penicillins Phenols Promega Reproduction Streptomycin

Most recents protocols related to «Cancer of Colon»

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Example 2

For Western blot analysis 20 μg of total protein extracted from cells lyzed with Laemmli-lysis buffer was used. Extracts were diluted in reducing sample buffer (Roth), subjected to SDS-PAGE and subsequently electrotransferred onto PVDF membrane (Pall). Immunostaining was performed with polyclonal antibodies reactive to CLDN6 (ARP) and beta-Actin (Abcam) followed by detection of primary antibodies with horseradish-peroxidase conjugated goat anti-mouse and goat anti-rabbit secondary antibodies (Dako).

Tissue lysates from up to five individuals were tested for each normal tissue type. No CLDN6 protein expression was detected in any of the normal tissues analyzed. In contrast to normal tissues, high expression of CLDN6 protein was detected in samples from ovarian cancer and lung cancer. CLDN6 expression was detected in NIH-OVCAR3 (ovarian cancer), MKN7 (gastric cancer), AGS (gastric cancer), CPC-N (SCLC), HCT-116 (colon cancer), FU97 (gastric cancer), NEC8 (testicular embryonal carcinoma), JAR (placental choriocarcinoma), JEG3 (placental choriocarcinoma), BEWO (placental choriocarcinoma), and PA-1 (ovarian teratocarcinoma).

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Patent 2024
Anti-Antibodies Antibodies beta-Actin Buffers Cancer of Colon Cell Lines Choriocarcinoma CLDN6 protein, human Embryonal Carcinoma Gastric Cancer Goat Histocompatibility Testing Horseradish Peroxidase Laemmli buffer Lung Cancer Malignant Neoplasms Mus Ovarian Cancer Ovary Placenta polyvinylidene fluoride Proteins Rabbits SDS-PAGE Small Cell Lung Carcinoma Teratocarcinoma Testis Tissue, Membrane Tissues Western Blot

Example 11

MPV.10.34.d IRC Effectiveness in Human Assays

While the in vitro functional test results of the above experiments were promising, the next desired step in the analysis was to perform similar experiments in human-based assays. To this end, the response of mock human cellular immune system components to tumor cells exposed to MPV.10.34.d IRC was examined in vitro. Human CMV (HCMV) was selected for this study since human CMV is highly prevalent (infecting 50-90% of the human population) and mostly asymptomatic in healthy individuals. (See, Longmate et al., Immunogenetics, 52(3-4):165-73, 2001; Pardieck et al., F1000Res, 7, 2018; and van den Berg et al., Med. Microbiol. Immunol., 208(3-4):365-373, 2019). Importantly, HCMV establishes a life-long persistent infection that requires long-lived cellular immunity to prevent disease. Hence, it is rational to hypothesize that a complex adaptive cell-mediated anti-viral immunity developed over many years to strongly control a viral infection in an aging person can be repurposed and harnessed to treat cancer.

In these experiments, CD8+ T cell responses to CMV peptides were tested in three different human tumor cell lines, including HCT116, OVCAR3, and MCF7. All three of these human tumor cell lines are HLA-A*0201 positive.

In vitro cytotoxicity assays. HTC112, human colon cancer cells, MCF7, human breast cancer cells, and OVCAR3, human ovarian cancer cells (all from ATCC, Manassas, VA, US) were seeded overnight at 0.01 to 0.2×106 per well per 100 μL per 96 well plate. The next day (about 20 to 22 hrs later), each cell line was incubated for one hour at 37° C. under the following conditions: (1) CMV peptide at a final concentration of 1 μg/mL (positive control), (2) MPV.10.34.d at a final concentration of 2.5 μg/mL (negative control), (3) CMV-conjugated MPV.10.34.d IRC at a final concentration of 2.5 μg/mL, (4) CMV-conjugated HPV16 IRC at a final concentration of 2.5 μg/mL, and (5) no antigen (negative control). After 1 hour, the cells were washed vigorously with 200 μL of media for three times to remove non-specific binding. Human patient donor CMV T cells (ASTARTE Biologics, Seattle, WA, US) were added at the E:T (effector cell:target cell) ratio of 10:1 and incubated in a tissue culture incubator for 24 hrs at 37 C, 5% CO2. The total final volume of each sample after co-culture was 200 μL. Cell viability was measured after co-culturing. Cell viability was measured with CELLTITER-GLO® (Promega, Madison, WI, US). This assay provides a luciferase-expressing chemical probe that detects and binds to ATP, a marker of cell viability. The amount of ATP generated from tumor cells was quantified according to manufacturer protocols. In these assays, reduced luciferase activity indicates cell death and suggests greater immune redirection and greater cytotoxicity.

The results are provided in FIG. 25. CMV-conjugated MPV.10.34.d IRC (“VERI-101” in FIGS. 25A, 25B, and 25C) was equally effective as CMV-conjugated HPV16 IRC (“CMV AIR-VLP” in FIGS. 25A, 25B, and 25C) in redirecting human healthy donor CMV pp65-specific CD8+ T-cells (Astarte Biologics, Inc., Bothell, WA, US) to kill immortalized HLA.A2 positive human colon cancer cells (HCT116), human ovarian cancer cells (OVCAR3), and human breast cancer cells (MCF7). The control samples (“No Ag” or “VERI-000” in FIGS. 25A, 25B, and 25C) showed no background tumor killing. Together, these data demonstrate that MPV.10.34.d IRC redirects mouse and human immune responses against tumor cells in vitro.

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Patent 2024
Acclimatization Antigens Antiviral Agents Biological Assay Biological Factors Cancer of Colon CD8-Positive T-Lymphocytes Cell Death Cell Line, Tumor Cell Lines Cells Cell Survival Cellular Immune Response Cellular Immunity Cytotoxin Figs HLA-A2 Antigen Homo sapiens Human papillomavirus 16 In Vitro Testing Luciferases Malignant Neoplasms Mammary Carcinoma, Human MCF-7 Cells Mus Neoplasms Ovarian Cancer Patients Peptides Persistent Infection Promega Response, Immune Response Elements System, Immune T-Lymphocyte Tissue Donors Tissues UL83 protein, Human herpesvirus 5 Virus Virus Diseases

Example 4

Cells were plated at 6,000 cells/well in a 96-well plate and treated with the indicated concentration of zafirlukast 24 hours later. Cells were allowed to grow for an additional 24 hours before alterations in growth were measured by the PrestoBlue cell proliferation assay in triplicate. Fluorescence readings with an excitation at 570 nm and emission of 600 nm were collected and treated samples were converted to a percentage of the untreated controls.

OVCar8 (human ovarian cancer cell line), HCT116 (human colon cancer), HeLa (cervical cancer cell line) and MDA-MB-231 (breast cancer cell line) cell lines were examined for their ability to inhibit cell proliferation. OVCar8 and HCT116 cells exhibited an IC50 in the 5-10 μM range. HeLa cervical cancer cells and MDA-MB-231 breast cancer lines were less sensitive. Table 1 illustrates the results of a cell proliferation assay testing zafirlukast against OVCar8 cells, HCT116 cells, HeLa cells and MDA-MB-231 cells.

TABLE 1
Cell LineTumor TypeIC50
HCT116Colon Cancer5 μM (±2 μM)
OVCar8Ovarian Cancer6 μM (±2 μM)
HeLaCervical Cancer30 μM (±5 μM) 
MDA-MB-231Breast Cancer100 μM (±7 μM) 

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Patent 2024
Biological Assay Cancer of Colon Cardiac Arrest Cell Lines Cell Proliferation Cells Cervical Cancer Colonic Neoplasms Fluorescence HCT116 Cells HeLa Cells Homo sapiens Isomerase Malignant Neoplasm of Breast Malignant Neoplasms MCF-7 Cells MDA-MB-231 Cells Neoplasms Ovarian Cancer Sulfhydryl Compounds Inhibitors zafirlukast
Not available on PMC !

Example 2

For Western blot analysis 20 μg of total protein extracted from cells lyzed with Laemmli-lysis buffer was used. Extracts were diluted in reducing sample buffer (Roth), subjected to SDS-PAGE and subsequently electrotransferred onto PVDF membrane (Pall). Immunostaining was performed with polyclonal antibodies reactive to CLDN6 (ARP) and beta-Actin (Abcam) followed by detection of primary antibodies with horseradish-peroxidase conjugated goat anti-mouse and goat anti-rabbit secondary antibodies (Dako).

Tissue lysates from up to five individuals were tested for each normal tissue type. No CLDN6 protein expression was detected in any of the normal tissues analyzed. In contrast to normal tissues, high expression of CLDN6 protein was detected in samples from ovarian cancer and lung cancer. CLDN6 expression was detected in NIH-OVCAR3 (ovarian cancer), MKN7 (gastric cancer), AGS (gastric cancer), CPC-N(SCLC), HCT-116 (colon cancer), FU97 (gastric cancer), NEC8 (testicular embryonal carcinoma), JAR (placental choriocarcinoma), JEG3 (placental choriocarcinoma), BEWO (placental choriocarcinoma), and PA-1 (ovarian teratocarcinoma).

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Patent 2024
Anti-Antibodies Antibodies beta-Actin Buffers Cancer of Colon Cell Lines Choriocarcinoma CLDN6 protein, human Embryonal Carcinoma Gastric Cancer Goat Histocompatibility Testing Horseradish Peroxidase Laemmli buffer Lung Cancer Malignant Neoplasms Mus Ovarian Cancer Ovary Placenta polyvinylidene fluoride Proteins Rabbits SDS-PAGE Small Cell Lung Carcinoma Teratocarcinoma Testis Tissue, Membrane Tissues Western Blot
To explore if this new model could independently assess prognosis, survival analysis was performed and forest plots drawn for colon cancer using univariate and multifactorial cox regression models adjusted with demographic and clinical characteristics (including age, sex, grade, T stage, N stage, and M stage). The parameter with a p < 0.05 was identified as an independent prognostic variable.
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Publication 2023
Cancer of Colon Division Phase, Cell Forests Prognosis

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Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
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The HCT116 cell line is a human colorectal carcinoma cell line that is widely used in research. It is a commonly used model system for studying various aspects of cancer biology and drug development.
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DMEM (Dulbecco's Modified Eagle's Medium) is a cell culture medium formulated to support the growth and maintenance of a variety of cell types, including mammalian cells. It provides essential nutrients, amino acids, vitamins, and other components necessary for cell proliferation and survival in an in vitro environment.
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RPMI 1640 medium is a commonly used cell culture medium developed at Roswell Park Memorial Institute. It is a balanced salt solution that provides essential nutrients, vitamins, and amino acids to support the growth and maintenance of a variety of cell types in vitro.
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The SW480 is a laboratory equipment product from the American Type Culture Collection (ATCC). It is a colorectal adenocarcinoma cell line that can be used for various cell-based research applications.
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Streptomycin is a broad-spectrum antibiotic used in laboratory settings. It functions as a protein synthesis inhibitor, targeting the 30S subunit of bacterial ribosomes, which plays a crucial role in the translation of genetic information into proteins. Streptomycin is commonly used in microbiological research and applications that require selective inhibition of bacterial growth.
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Penicillin is a type of antibiotic used in laboratory settings. It is a broad-spectrum antimicrobial agent effective against a variety of bacteria. Penicillin functions by disrupting the bacterial cell wall, leading to cell death.
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Penicillin/streptomycin is a commonly used antibiotic solution for cell culture applications. It contains a combination of penicillin and streptomycin, which are broad-spectrum antibiotics that inhibit the growth of both Gram-positive and Gram-negative bacteria.
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RPMI 1640 is a common cell culture medium used for the in vitro cultivation of a variety of cells, including human and animal cells. It provides a balanced salt solution and a source of essential nutrients and growth factors to support cell growth and proliferation.
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The SW620 is a type of cell line maintained by the American Type Culture Collection (ATCC). It is a human colorectal adenocarcinoma cell line derived from a metastatic site. The SW620 cell line is commonly used in cancer research and drug development studies.

More about "Cancer of Colon"

Colorectal cancer, large intestine cancer, bowel cancer, adenocarcinoma of the colon, CRC, are all terms used to describe Cancer of the Colon - a common malignant tumor that originates in the large intestine or colon.
This type of cancer often develops from precancerous polyps or growths within the colon.
Early detection and treatment are crucial, as colon cancer is often curable if caught early.
Symptoms may include changes in bowel habits, rectal bleeding, abdominal pain, and unexplained weight loss.
Risk factors include age, family history, diet, and lifestyle factors.
Effective management often involves a combination of surgical resection, chemotherapy, and/or radiation therapy.
Cell lines like FBS, HCT116, SW480, and SW620 are commonly used in colon cancer research, often cultured in DMEM or RPMI 1640 medium supplemented with antibiotics like Penicillin and Streptomycin.
Ongoing research aims to improve understanding of the disease's biology and develop more targeted, effective treatments for patients.
PubCompare.ai is a leading AI platform that can help optimize your colon cancer research by identifying the best protocols and products from the literature, preprints, and patents.