Carcinoma
They can occur in a wide variety of organs, including the lungs, breasts, prostate, and colon.
Carcinomas are characterized by uncontrolled cell growth and the potential to invade surrounding tissues and metastasize to other parts of the body.
Early detection and appropriate treatment are crucial for improving patient outcomes.
Researchers utilize a variety of experimental protocols and products to study carcinoma biology and develop new therapies.
PubCompare.ai can help streamline this process by providing AI-powered access to relevant protocols and facilitating comparisions to identify the best approaches for carcionma research.
Most cited protocols related to «Carcinoma»
ChIP–chip dataset. A number of assays have been recently developed that use immunopercipitation-based enrichment of cellular DNA for the purpose of identifying binding or other chemical events and the genomic locations at which they occur. Location analysis, also known as ChIP–chip, is a technique that enables the mapping of transcription binding events to genomic locations at which they occur [1 (link),54 ]. The output of the assay is a fluorescence dye ratio at each spot of the array. If spots are taken to represent genomic regions, then we can regard the ratio and p-value associated with each spot as an indication of TF binding in the corresponding genomic region. We applied DRIM to
An additional ChIP–chip dataset was constructed using the data reported in Lee et al. [28 (link)] containing 113 experiments in rich media. The data is partially exclusive to the data of Harbison et al. [25 (link)]. The same filtering procedure was performed, resulting in a set of 65 experiments, termed “Lee filtered dataset.”
Methylated CpG dataset. Using a technique similar to ChIP–chip, termed methyl-DNA immunoprecipitation (mDIP), enables the measurement of methylated CpG island patterns [2 (link),55 (link)]. The third dataset contains the CpG island methylation patterns of four different human cancer cell lines (Caco-2, Polyp, Carcinoma, PC3) where several replicate experiments were done for each of the cell lines. In each of these experiments, the CpG methylation signal was measured in ∼13,000 gene promoters as reported in [2 (link)].
Anchors can be constructed using clinically-based criteria, such as response to treatment, or more subjective criteria, e.g. health status. We used ECOG grades, assessed by physician, to group patients into categories of performance status, and determined mean difference scores between ECOG grades. Distribution-based criteria were then applied to the statistics associated with each anchor-based category. A second anchor-based approach used FACT-G scores. The cohort was stratified into quintiles based on FACT-G summary scores. Grouping the cohort into quintiles approximated an appropriate threshold for stratifying patients based on MID estimates for the FACT-G, have been identified as close to 6 in previous studies: 6–7 in hepatobiliary carcinoma [13 (link)], and 5–6 in breast cancer [10 (link)]. Final results were summarized as a range of MID estimates and as an average MID across categories, weighted by the sample size within each category.
Most recents protocols related to «Carcinoma»
Example 5
In order to compare levels of adherence to HEp-2 epithelial cells in culture, we used an established model for evaluating adherence of EHEC O157:H7 (27). HEp-2, human laryngeal carcinoma epithelial cells, were a kind gift from Dr. Carlton Gyles (Department of Pathobiology, University of Guelph). Briefly, HEp-2 cells grown in EMEM supplemented with 10% (v/v) FBS were plated onto 24-well tissue culture plates at 2×105 cells ml−1 and incubated for 24 h in the presence of 5% CO2. The cells were then maintained during the assay in serum and antibiotic-free EMEM. Before inoculation with bacteria, 10% (v/v) of L. acidophilus CFSM selected fractions were added in triplicate to treatment group wells. Wells containing the negative control groups were inoculated with 105 E. coli O157:H7 strain VS94 with or without supplementation with 100 μM propanolol (Sigma-Aldrich Canada Ltd.). Following inoculation of 105 EHEC O157 into treatment and control group wells, the plates were incubated for 3 h at 37° C. in the presence of 5% CO2. The cell monolayers were then washed three times with PBS to remove non-adhering bacteria and fresh medium was added. Cells were incubated for another 3 h and then washed six times with PBS. Washed cells were lysed with 0.1% Triton X-100. Released bacteria present in the suspension were collected and appropriate dilutions were plated on LB agar. To evaluate if the percentage of adherence in the treatment groups was significantly different from that of the control group, where the recovered counts from the control group (2.2×107 CFU ml−1) were considered to be 100%, the percentage of adherence in the negative control and treatment groups were calculated using the following equation.
Example 5
The human skin squamous carcinoma line (HSC) (Japanese Collection of Research Bioresources Cell Bank (JCRB)) was cultured in Dulbecco's minimal essential media (DMEM) containing 20% fetal bovine serum (FBS), (Thermofisher, Waltham, MA). Cells were plated at a density of 5,000 cells per well into a 96-well plate and allowed to attach for 24 h in a 37° C. humidified incubator with a 5% CO2 atmosphere. Media was replaced with that containing test agents or vehicle (0.1% dimethylsulphoxide) in 1% FBS and cells incubated for a further 72 h. Cell viability was assessed using CellTiter-Glo® (Promega). Non-linear regression analysis was performed using GraphPad PRISM®.
; tumors are differentiated into 3 grades: G1, G2, and G3. The lowest grade (G1) displays slim papilla with no atypia; the highest grade (G3) displays major atypia with marked loss of normal architecture. A classification of G2 covers the wide spectrum of lesions seen between G1 and G3 and includes increasing layers within the papilla and rare atypia.
To collect diagnostic information from participants after reviewing each image, we developed a histology form on the Qualtrics web-based platform; histology forms are commonly used by pathologists to record their observations and interpretations of images [31 (link), 41 (link)]. The histology form asked participating pathologists to provide the single most advanced diagnosis by selecting among the five diagnostic categories detailed above (ranging from benign to invasive carcinoma). They also rated the difficulty of interpreting the image and their confidence with their determination (both on scales from 1–7). Of less relevance to this paper, information was also gathered about histopathological features (e.g., nuclear grading, presence and nature of necrosis, mitotic activity), whether they believed the features indicated a borderline diagnosis (between two diagnostic categories), and whether the pathologist would seek a consultative second opinion if they encountered the image during ordinary clinical practice.
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More about "Carcinoma"
These cancerous growths can occur in a wide range of organs, including the lungs, breasts, prostate, and colon.
Carcinomas are characterized by uncontrolled cell division and the potential to invade surrounding tissues and spread (metastasize) to other parts of the body.
Early detection and appropriate treatment are crucial for improving patient outcomes in carcinoma cases.
Researchers utilize a variety of experimental protocols and products to study carcinoma biology and develop new therapies.
Common cell culture media used in carcinoma research include DMEM, RPMI 1640, and L-glutamine, often supplemented with antibiotics like Penicillin and Streptomycin.
Transfection reagents like Lipofectamine 2000 are also employed to introduce genetic material into carcinoma cells, enabling the study of specific genes and their role in cancer progression.
PubCompare.ai can streamline this research process by providing AI-powered access to relevant protocols and facilitating comparisons to identify the best approaches for carcinoma investigations.
By leveraging this tool, researchers can optimize their workflows and improve the accuracy and efficiency of their carcinoma studies.