Tissue samples from individuals of the first set (n = 28) were obtained from the tumor bank of Charité Comprehensive Cancer Center. Gene expression was examined by whole-human-genome microarrays (Affymetrix, Santa Clara, CA, USA). Ten esophageal squamous cell carcinoma (ESCC) and 18 normal esophageal (NE) biopsies were randomly collected. Normal healthy esophageal biopsies were collected from patients with esophageal pain but diagnosed as normal squamous without pathological changes. Surgical specimens of chemotherapy-naïve patients with known ESCC of histological grading G1, UICC stage II and III, had undergone esophagectomy. Patients’ age ranged from 22 to 83 years, with a median age of 59 years.
A second panel (n = 71) consisting of ESCC (n = 25), NE (n = 11), esophageal adenocarcinoma (EAC) (n = 13), gastric adenocarcinoma (GAC) (n = 15) and colorectal cancers (CRC) (n = 7) was used for qRT-PCR validation. Patients’ age ranged from 24 to 79 years, with a median age of 63 years.
All samples were snap-frozen in liquid nitrogen and stored at −80°C. We obtained tissue specimens from all subjects with informed written consent (approved by the local ethics committee of the Charité-Universitätsmedizin, Berlin). Each single specimen included in this study was histopathologically approved according to grade and stage by an experienced pathologist ( MV, University Bayreuth).
A second panel (n = 71) consisting of ESCC (n = 25), NE (n = 11), esophageal adenocarcinoma (EAC) (n = 13), gastric adenocarcinoma (GAC) (n = 15) and colorectal cancers (CRC) (n = 7) was used for qRT-PCR validation. Patients’ age ranged from 24 to 79 years, with a median age of 63 years.
All samples were snap-frozen in liquid nitrogen and stored at −80°C. We obtained tissue specimens from all subjects with informed written consent (approved by the local ethics committee of the Charité-Universitätsmedizin, Berlin). Each single specimen included in this study was histopathologically approved according to grade and stage by an experienced pathologist ( MV, University Bayreuth).