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> Disorders > Neoplastic Process > Mammary Neoplasms, Human

Mammary Neoplasms, Human

Mammary Neoplasms are tumors or abnormal growths that develop in the breast tissue.
These can include benign conditions like fibroadenomas as well as malignant cancers like breast carcinoma.
Proper identification and classification of mammary neoplasms is crucial for effective treatment and management.
PubCompare.ai offers a powerful platform to discover optimized research protocols that enhance reproducibility and accuracy in the study of these complex conditions.

Most cited protocols related to «Mammary Neoplasms, Human»

Affymetrix data was downloaded from a total of ten datasets from published studies listed in Table 2 from the Gene Expression Omnibus [3 (link)] or Array Express [1 (link)] repositories. Raw .cel files were not available for the Wang et al. dataset, so all other datasets were normalized as in this study using the MAS 5.0 algorithm with a target intensity of 600 as implemented in the Simpleaffy package [50 (link)], using R [31 (link)] within BioConductor [48 (link)]. NetAffx [9 (link)] was used to identify Affymetrix probesets representing the 'intrinsic gene set' previously used to classify human breast tumours [8 (link)]. Centered average linkage clustering was performed using the Cluster [35 (link)] and TreeView programs as described previously [7 (link)]. Supervised principal components analysis using the Superpc for R package was used as previously described [29 ,30 (link)], in order to compare the predictive power of combining different published datasets. The follow up endpoints for the Loi et al., Pawitan et al. and Sotoriou et al. datasets were recurrence-free survival, for Desmedt et al. and Ivshina et al. datasets it was disease-free survival and for the Minn et al. and Wang et al. datasets it was distant metastasis-free survival.
Publication 2008
Gene Expression Genes Mammary Neoplasms, Human Neoplasm Metastasis Recurrence
miRNA profiling from total RNA was performed using Agilent Technologies “Human miRNA Microarray Kit (V2)” according to manufacturer's protocol. Scanning on Agilent Scanner G2565A and Feature Extraction (FE) v9.5 was used to extract signals. Excluding two samples, experiments were performed using duplicate hybridizations (99 samples) on different arrays and time points. miRNA signal intensities for replicate samples were averaged and log2 transformed. The expression levels were normalized to the 75th percentile. That is, the expression levels in each sample, i, were multiplied by a constant, ci, such that the 75th percentile of the expression levels in that sample will equal to a constant c – the 75th percentile in the entire dataset. miRNA expression status was scored as present or absent for each gene in each sample by default settings in FE v9.5. miRNAs in samples that were run in replicates were considered present if scored in one of the two arrays. The microarray contains probes for 76 viral and 723 human miRNAs (based on miRBASE v10.1). We filtered out all miRNAs that were detected in less than 10% of the samples. This filtering resulted in 489 miRNAs considered to be expressed in this set of human breast tumors and used in further analysis steps. For these miRNAs, all expression values were used for further analysis. Thus, no missing values were used. The miRNA expression data is MIAME compliant and have been submitted to the Gene Expression Omnibus (GEO) with accession number GSE19536.
Publication 2011
Acid Hybridizations, Nucleic DNA Replication Gene Expression Genes Homo sapiens Mammary Neoplasms, Human Microarray Analysis Strains
For all human breast tumor studies, intrinsic subtype classification was performed using the PAM50 predictor [9 (link)]. Human claudin-low tumor samples were identified using either SigClust [22 (link)] or the nine-cell line claudin-low predictor. Samples identified by SigClust [22 (link)] or the nine-cell line claudin-low predictor were called claudin-low, regardless of the PAM50 call. For breast cancer cell lines, the claudin-low subtype classification was based on unsupervised hierarchical clustering using the intrinsic list of Parker et al. [9 (link)] and the node identified in Figure S4 in Additional file 1. The complete gene list of the nine-cell line claudin-low predictor can be found in Supplemental Data in Additional file 2.
Publication 2010
Cell Lines Claudins Genes Homo sapiens Mammary Neoplasms, Human MCF-7 Cells Neoplasms
Expression profiles of human breast tumors were downloaded from GEO series GSE3165. In order to standardize on one microarray platform, only the 94 arrays of platform GPL887 (Agilent Human 1A Microarray V2) were included in the analysis. Each tumor was classified to one of six molecular subtypes, namely basal-like, luminal A, luminal B, Her2, normal-like and claudin-low (30 (link)). Expression values were normalized and filtered as described previously (31 (link)).
Publication 2012
Claudins ERBB2 protein, human Homo sapiens Mammary Neoplasms, Human Microarray Analysis Neoplasms Phenobarbital
All mouse studies were approved by the Institutional Animal Care and Use Committee at The University of Texas MD Anderson Cancer Center. K-rasLSL-G12D mice were purchased (Jackson Laboratories). 129/SV syngeneic mice and nu/nu mice were bred in-house. Mice received standard care and were euthanized according to the standards set forth by the Institutional Animal Care and Use Committee. To generate autochthonous lung tumors, 50,000 GFP-Cre or PI4KB-cre lentivirus particles were delivered into the lungs of K-rasLSL-G12D mice through an endotracheal tube as reported previously (34 (link)). As we have described (59 (link)), KP cells were injected subcutaneously (106 cells) or intravenously (105 cells) into syngeneic, immunocompetent mice, and human lung cancer cells were injected intrathoracically (106 cells) into nu/nu mice. Mice bearing human H2122 or H23 orthotopic lung tumors were treated with compound A (100 mg/kg) or vehicle (5% DMSO, 20% HPBCD, 2% Poly 80, and 10% PEG300) twice daily by intraperitoneal injection beginning 21 d after tumor cell injection and continued for 7 d. Nu/nu mice bearing human MB-MDA-468 breast tumors or lung cancer patient-derived xenografts were treated for 7 d with vehicle or compound A once tumors reached 100 mm3. Nu/nu mice bearing human H2122 orthotopic lung tumors were treated with compound B (20 mg/kg or 40 mg/kg plus 20 mg/kg ritonavir) or vehicle (5% DMSO, 20% HPBCD, 2% Poly 80, and 10% PEG300) subcutaneously twice daily beginning 7 d after tumor cell injection and continued for 21 d. For each model, necropsies were performed to quantify primary tumor size and metastatic tumor burden.
Publication 2020
Autopsy Cells Corticosterone Heterografts Homo sapiens Immunocompetence Injections, Intraperitoneal Institutional Animal Care and Use Committees Lentivirus Lung Lung Cancer Lung Neoplasms Malignant Neoplasms Mammary Neoplasms, Human Mice, 129 Strain Mice, Nude Mus Neoplasms Patients Poly A polyethylene glycol 300 Ritonavir Somatostatin-Secreting Cells Sulfoxide, Dimethyl Tumor Burden

Most recents protocols related to «Mammary Neoplasms, Human»

Metabolomic profiling of human breast tissues was performed using an untargeted approach. Untargeted metabolic profiling of known and unknown metabolites was performed in 67 human breast tumors and 65 tumor-adjacent noncancerous tissues by Metabolon Inc, as described previously [18 (link), 19 (link)]. The TNBC cohort includes patients recruited in Baltimore (Maryland, USA) hospitals between 1993 and 2003, as previously described [18 (link), 19 (link)]. Clinical and pathological information (e. g. hormone receptor status) was obtained from medical records and pathology reports. Triple-negative tumors were negative for estrogen, progesterone, and HER2 receptor expression. In total 17 triple-negative tumors where the metabolic analysis was available were identified [18 (link), 19 (link)]. Survival analysis was performed in these 17 patients, who had long-term follow up for breast cancer-specific survival.
Publication 2023
Breast Breast Carcinoma ERBB2 protein, human Estrogens Homo sapiens Hormones Mammary Neoplasms, Human Neoplasms Patients Progesterone Tissues
The protocol (#BC2015-013) for human breast tumor biopsy collection was approved by the Ethics Board of Jiangxi Provincial People’s Hospital. All enrolled patients provided written informed consent. In total, 73 ER-negative and 102 ER-positive breast tumors and their adjacent normal tissues were collected. All patients were diagnosed and underwent surgery from 2015 to 2019 in the Department of Oncology, Jiangxi Provincial People’s Hospital, Nanchang, China. The basic information (ages and tumor stages) of these patients are provided in Table S1.
Publication 2023
Biopsy Breast Neoplasm Mammary Neoplasms, Human Neoplasms Operative Surgical Procedures Patients Tissues
Human breast tumor cells (MDA-MB-231, ATCC HTB-26) were cultured in DMEM culture medium, supplemented with FBS (10% v/v), penicillin (1% w/v) and streptomycin (1% v/v), and maintained in a humidified incubator containing 5% CO2 at 37 °C. Upon reaching the confluence stage, the cells were trypsinized, and an aliquot was transferred to another flask containing a complete culture medium for subculture.
Publication 2023
Cells Culture Media Mammary Neoplasms, Human Penicillins Streptomycin
1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine (DOPE) and 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[amino(polyethylene glycol)-2000 (DSPE-PEG2000) were supplied by Lipoid GmbH (Ludwigshafen, Germany). Cholesterol hemisuccinate (CHEMS), phosphate-buffered saline (PBS), sodium hydroxide, 4-(2-hydroxyethyl)piperazine-1-ethane sulfonic acid (HEPES), ammonium sulfate, and sodium bicarbonate were obtained from Sigma-Aldrich (St. Louis, MI, USA). Polysorbate 80 (Tween™ 80) was provided by Croda Inc (Edison, NJ, USA). Chloroform and dimethylsulfoxide (DMSO) were provided from Synth (São Paulo, Brazil). Sodium chloride and HPLC-grade methanol were purchased from Merck (Frankfurt, Germany). Doxorubicin hydrochloride (DOX) was purchased from ACIC Chemicals (Brantford, ON, Canada). SIM was acquired from Fagron (São Paulo, Brazil) with a purity greater than 98.0%. The water used in the experiments was purified using the Milli-Q® distillation and deionization equipment (Millipore, MA, USA). The other substances used were of analytical grade.
Human breast tumor cell lines (MDA-MB-231, MCF-7, SK-BR-3) were purchased by American Type Culture Collection (Manassas, VA, USA). Culture media (Dulbecco’s Modified Eagle’s Medium, DMEM; Minimum Essential Medium, MEM and McCoy), Fetal bovine serum (FBS), penicillin, and streptomycin were obtained from Gibco Life Technologies (Carlsbad, USA). Sulforhodamine B (SRB), tris(hydroxymethyl)aminomethane (Tris base), and trypsin were obtained from Sigma-Aldrich (St. Louis, MI, USA) and Hoechst 33258 (Thermo Fisher Scientific—Waltham, MA, USA).
Publication 2023
1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-methoxy-poly(ethylene glycol 2000) Acic Bicarbonate, Sodium Cell Lines Chloroform cholesterol-hemisuccinate croda dioleoyl cephalin Distillation Eagle ethane sulfonate Fetal Bovine Serum HEPES High-Performance Liquid Chromatographies Hoechst 33258 Hydrochloride, Doxorubicin lissamine rhodamine B Mammary Neoplasms, Human Methanol methylamine Penicillins Phosphates phosphoethanolamine Piperazine polyethylene glycol 2000 Polysorbate 80 Saline Solution Sodium Chloride Sodium Hydroxide Streptomycin Sulfate, Ammonium Sulfoxide, Dimethyl Tromethamine Trypsin Tween 80
Cell Culture. Tumor cell lines from human mammary adenocarcinoma MCF-7 and human glioblastoma T98G were cultured in IMDM and EMEM medium, respectively, supplemented with 10% fetal bovine serum (FBS) (Invitrogen), penicillin (100 units/mL), and streptomycin (100 μg/mL) at 37 °C with 5% CO2 in a humid atmosphere.
The inhibition of cell proliferation was determined using a colorimetric assay based on the cleavage of MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) by mitochondrial dehydrogenases in viable cells, leading to formazan formation [67 (link)]. Briefly, exponentially growing cells were plated in a 96-well plate (2000 cells per well). After overnight incubation, the cells were treated with media containing albumin conjugates. The solutions of conjugates were applied into the media for 72 h at 37 °C. A 10 μL aliquot of MTT solution (25 mg/mL in PBS) was added to each well, and the plates were incubated at 37 °C for 3 h. The medium was removed, and the dark blue crystals of formazan were dissolved in 0.1 mL of isopropanol. The absorbance at 570 nm (peak) and 620 nm (baseline) was read using a microplate reader, Multiscan EX (Thermo Electron Corporation). The results were expressed as a percentage of the control values. All values in the present study are given as the mean ± standard deviation (SD) values, and all measurements were repeated three times.
Publication 2023
Adenocarcinoma Albumins Atmosphere Biological Assay Bromides Cell Culture Techniques Cell Lines Cell Proliferation Cells Colorimetry Cytokinesis Electrons Fetal Bovine Serum Formazans Glioblastoma Homo sapiens Isopropyl Alcohol Mammary Neoplasms, Human Mitochondrial Inheritance Oxidoreductase Penicillins Psychological Inhibition Streptomycin

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Fetal Bovine Serum (FBS) is a cell culture supplement derived from the blood of bovine fetuses. FBS provides a source of proteins, growth factors, and other components that support the growth and maintenance of various cell types in in vitro cell culture applications.
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MDA-MB-231 is a cell line derived from a human breast adenocarcinoma. This cell line is commonly used in cancer research and is known for its aggressive and metastatic properties.
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MCF-7 is a cell line derived from human breast adenocarcinoma. It is an adherent epithelial cell line that can be used for in vitro studies.
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Penicillin/streptomycin is a commonly used antibiotic solution for cell culture applications. It contains a combination of penicillin and streptomycin, which are broad-spectrum antibiotics that inhibit the growth of both Gram-positive and Gram-negative bacteria.
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RPMI 1640 is a common cell culture medium used for the in vitro cultivation of a variety of cells, including human and animal cells. It provides a balanced salt solution and a source of essential nutrients and growth factors to support cell growth and proliferation.
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Penicillin is a type of antibiotic used in laboratory settings. It is a broad-spectrum antimicrobial agent effective against a variety of bacteria. Penicillin functions by disrupting the bacterial cell wall, leading to cell death.
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Streptomycin is a broad-spectrum antibiotic used in laboratory settings. It functions as a protein synthesis inhibitor, targeting the 30S subunit of bacterial ribosomes, which plays a crucial role in the translation of genetic information into proteins. Streptomycin is commonly used in microbiological research and applications that require selective inhibition of bacterial growth.
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DMEM (Dulbecco's Modified Eagle's Medium) is a cell culture medium formulated to support the growth and maintenance of a variety of cell types, including mammalian cells. It provides essential nutrients, amino acids, vitamins, and other components necessary for cell proliferation and survival in an in vitro environment.
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SKBR3 is a cell line derived from a breast adenocarcinoma. It is a commonly used model for breast cancer research.
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The BT474 is a cell line derived from a human breast carcinoma. It is a well-characterized model for studying breast cancer biology and is commonly used in research and drug development.

More about "Mammary Neoplasms, Human"

Mammary Neoplasms, also known as breast tumors or breast cancers, are abnormal growths that develop in the breast tissue.
These can range from benign conditions like fibroadenomas to malignant cancers like breast carcinoma.
Proper identification and classification of these neoplasms is crucial for effective treatment and management.
Breast cancer cell lines like MDA-MB-231, MCF-7, SKBR3, and BT474 are commonly used in research to study mammary neoplasms.
These cell lines are typically cultured in media like RPMI 1640 or DMEM, often supplemented with penicillin and streptomycin antibiotics.
Understanding the complex biology and behavior of mammary neoplasms is an active area of research.
Discovering optimized research protocols that enhance reproducibility and accuracy is key to advancing the field.
PubCompare.ai offers a powerful platform to help researchers find the best protocols from literature, pre-prints, and patents through intelligent comparisons, enabling them to achieve reliable results in the study of these conditions.