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Biofilms

Biofilms are complex, adherent communities of microorganisms embedded in a self-produced extracellular matrix.
These structures allow microbes to thrive in diverse environments and contribute to a variety of medical, industrial, and environmental processes.
Understating biofilms is crucial for fields like microbiology, infection control, and environmental remediation.
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Most cited protocols related to «Biofilms»

The global community of microbial ecologists was invited to submit samples for microbiome analysis, and samples were accepted for DNA extraction and sequencing provided that scientific justification and high-quality sample metadata were provided before sample submission. Standardized sampling procedures for each sample type were used by contributing investigators. Samples were collected fresh and, where possible, immediately frozen in liquid nitrogen and stored at −80 °C. Detailed sampling protocols are described in publications of the individual studies (Supplementary Table 1). Bulk samples (e.g., soil, sediment, feces) and fractionated bulk samples (e.g., sponge coral surface tissue, centrifuged turbid water) were taken using microcentrifuge tubes. Swabs (BD SWUBE dual cotton swabs or similar) were used for biofilm or surface samples. Filters (Sterivex cartridges, 0.2 μm, Millipore) were used for water samples. Samples were sent to laboratories in the United States for DNA extraction and sequencing: water samples to Argonne National Laboratory, soil samples to Lawrence Berkeley National Laboratory (pre-2014) or Pacific Northwest National Laboratory (2014 onward), and fecal and other samples to the University of Colorado Boulder (pre-2015) or the University of California San Diego (2015 onward).
Publication 2017
Biofilms Coral Dietary Fiber Feces Freezing Gossypium Microbial Community Microbiome Nitrogen Porifera Tissues
The global community of microbial ecologists was invited to submit samples for microbiome analysis, and samples were accepted for DNA extraction and sequencing provided that scientific justification and high-quality sample metadata were provided before sample submission. Standardized sampling procedures for each sample type were used by contributing investigators. Samples were collected fresh and, where possible, immediately frozen in liquid nitrogen and stored at –80 °C. Detailed sampling protocols are described in publications of the individual studies (Supplementary Table 1). Bulk samples (for example, soil, sediment, faeces) and fractionated bulk samples (for example, sponge coral surface tissue, centrifuged turbid water) were taken using microcentrifuge tubes. Swabs (BD SWUBE dual cotton swabs or similar) were used for biofilm or surface samples. Filters (Sterivex cartridges, 0.2 μm, Millipore) were used for water samples. Samples were sent to laboratories in the United States for DNA extraction and sequencing: water samples to Argonne National Laboratory, soil samples to Lawrence Berkeley National Laboratory (pre-2014) or Pacific Northwest National Laboratory (2014 onward), and faecal and other samples to the University of Colorado Boulder (pre-2015) or the University of California San Diego (2015 onward).
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Publication 2017
Biofilms Coral Dietary Fiber Feces Freezing Gossypium Microbial Community Microbiome Nitrogen Porifera Tissues
An overview of the samples and methodology used in this study is provided in Figure 1. Sample collection, DNA extraction, random fragmentation and cloning of approximately 3-kb fragments, Sanger sequencing, assembly, and curation of community genomics data were performed using phred/phrap/consed package as detailed previously [12 (link),55 (link)]. The combined UBAs nonLeptos dataset was constructed by assembling sequencing reads derived from both the UBA BS and UBA biofilm samples (with UBA reads previously assigned to Leptospirillum spp. removed). This included 229,082 reads and approximately 210 Mb of total sequence, which assembled into 15,929 contigs and 36.6 Mb of composite sequence.
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Publication 2009
Biofilms Specimen Collection
For spatiotemporal measurements of different reporters and for separating different populations in flow chambers, biofilms were imaged with a Yokogawa CSU confocal spinning-disk unit mounted onto a Nikon Ti-E inverted microscope using a Plan Apo ×60/1.4 NA oil-immersion objective (Nikon), by exciting fluorescence using a 488 nm laser (for sfGFP) and a 552 nm laser (for mRuby2/mRuby3). Images were acquired using an Andor iXon EMCCD camera at −80 °C. NIS Elements Advanced Research v.4.5 (Nikon) and Micro-Manager v.2.0 beta were used to control the microscopes.
Macrocolony biofilms of E. coli strain (KDE1469) were imaged using the microscope setup described above, but with a ×4/0.2 NA air objective, exciting the constitutively produced sfGFP. Macrocolony biofilms of E. coli expressing mRuby2 constitutively (Fig. 2b) were imaged using the spinning-disk confocal microscope described above, equipped with a 552 nm laser. Images were acquired after removing the lid of the Petri dishes, using a ×20/0.4 NA air objective and a z spacing of 1 µm, all within a microscope incubator kept at 28 °C.
B. subtilis microcolonies (Fig. 1e) were imaged using a ×100/1.4 NA oil-immersion objective on the spinning-disk confocal microscope described above. Free-floating B. subtilis aggregates (Fig. 1a) were imaged using a ×40/1.3 NA oil-immersion objective and the spinning-disc confocal microscope, after spotting the culture onto a cover slip. To image a population of three mixed strains of V. cholerae (Extended Data Fig. 2f) and to image pellicle biofilms of B. subtilis (Fig. 1a) with different fluorescent reporters, images were captured using a Zeiss LSM 880 point-scanning confocal laser scanning microscope with a ×40/1.2 NA water-immersion objective.
P. aeruginosa biofilms were imaged using a Leica SP8 confocal microscope with a ×40/1.1 NA water-immersion objective and a z step of 3 µm.
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Publication 2021
A-A-1 antibiotic Biofilms Dental Pellicle Escherichia coli Fluorescence Hyperostosis, Diffuse Idiopathic Skeletal Microscopy Microscopy, Confocal Strains Submersion Vibrio cholerae
In all experiments, bacterial cells were cultured in 25mL Luria-Bertani broth (LB) for 16 hours at 37°C, 300RPM, and 80% humidity in 250mL flasks. Unless otherwise noted, the following concentrations were used: 10 μg/mL gentamicin, 100 μg/mL ampicillin, 5 μg/mL ofloxacin, 20 μM CCCP, 1 mM KCN. The concentration of all carbon sources added to potentiate aminoglycosides was normalized to deliver 60 mM carbon (e.g., 10 mM glucose, 20 mM pyruvate, etc.). E. coli (K12 EMG2) and S. aureus (ATCC 25923) were the two parent strains used in this study. Knockouts (Supplementary Table 1 and 2) were constructed by P1-phage transduction from the Keio knockout collection. In E. coli, non-persister stationary phase cells were killed by treatment with 5 μg/mL ofloxacin for 4 hours25 (link), 26 (link). Samples were then washed with phosphate buffered saline (PBS) and suspended in M9 salts with carbon source and antibiotic to determine metabolite-enabled killing of persisters. At specified time points, 10 μL aliquots of samples were removed, serially diluted, and spot-plated onto LB agar plates to determine colony forming units/mL (CFU/mL) and survival. Gent-TR was made as previously described27 (link). Aminoglycoside uptake was measured by incubating stationary phase samples with 10 μg/mL Gent-TR for 5 minutes at 37°C, 300RPM, and 80% humidity. 100 μL of each sample was then washed and resuspended in PBS and analyzed on a BD FACS Aria II flow cytometer. Biofilm survival assays were performed as previously described28 (link). Raw microarray data for S. aureus were downloaded from the Gene Expression Omnibus (GEO) series GSE2097329 (link) and processed with RMA express using background adjustment, quantile normalization, and median polish summarization to compute RMA expression values30 (link). Mouse experiments were performed with female Charles River Balb/C mice in collaboration with ViviSource Laboratories and conformed to the ViviSource IACUC policies and Procedural Guidelines.
Publication 2011
Agar Aminoglycosides Ampicillin Antibiotics Bacteria Bacteriophage P1 Biofilms Biological Assay Carbon Carbonyl Cyanide m-Chlorophenyl Hydrazone Cells Escherichia coli Females Gene Expression Gentamicin Glucose Humidity Institutional Animal Care and Use Committees Mice, Inbred BALB C Microarray Analysis Mus NRG1 protein, human Ofloxacin Parent Phosphates Pyruvate Rivers Saline Solution Salts Staphylococcus aureus Strains

Most recents protocols related to «Biofilms»

Example 1

119 Dicty strains were screened for their ability to feed on Dickeya (Dd) or Pectobacterium (Pcc) at 10° C. This assay was performed by inoculating Dd or Pcc on a low nutrient medium (SM2 agar) that supports both bacterial and Dicty growth. Dicty spores from individual strains were then inoculated on top of the bacterial growth and incubated at 10° C. to mimic potato storage temperatures. Dicty strains that successfully fed on Dd or Pcc created visible clearings in the lawn of bacterial growth and ultimately produced sporangia (fruiting bodies) that rose from the agar surface. An example of the phenotype that was considered successful clearing of bacteria is shown in FIG. 3A. From this initial screen, 36 Dicty strains that were capable of feeding on both Dd and Pcc at 10° C. were identified (FIG. 1B).

Of the 36 strains capable of feeding on both Dd and Pcc, 34 came from the Group 4 Dictyostelids (FIG. 1). This group includes D. discoideum, D. giganteum, D. minutum, D. mucoroides, D. purpureum, and D. sphaerocephalum (72). The results indicate that this group is particularly enriched in Dd and Pcc-feeding strains.

A further experiment was performed to identify Dicty species capable of feeding on biofilms of Dd and Pcc. Microporous polycarbonate membranes (MPMs) are widely reported to support biofilm formation of numerous Enterobacteriaceae species (2, 63, 70, 71). It was determined if Dd and Pcc formed biofilms on MPMs and determined if Dicty strains were capable of feeding on these biofilms. Membranes were placed on top of SM2 agar to provide Dd and Pcc with nutrients for growth. Bacteria were then inoculated on the surface of the MPMs and growth was monitored over the course of 1 week by washing bacteria off the membranes and performing dilution plating for colony counting. Growth of both bacterial strains plateaued around 4 dpi (FIG. 2).

From these results, it was determined that the best time to collect inoculated MPMs for biofilm analysis was at 2 dpi. Scanning electron microscopy (SEM) is commonly used to confirm biofilm formation by detecting extracellular polymeric substance (EPS) that forms the biofilm matrix (2). Samples of Dd and Pcc after 2 days of growth on MPMs in the presence and absence of Dicty are analyzed using SEM.

19 Dicty strains identified as active were tested for their ability to feed on Dd and Pcc growing on MPMs. These experiments were performed by establishing Dd and Pcc growth on MPMs overlaid on SM2 agar at 37° C. for 24 hr. Dicty spores were then applied to the center of bacterial growth in a 5 uL drop containing 1000 spores. Bacteria and Dicty were incubated at 10° C. for 2 weeks before remaining bacteria were washed off and colonies were counted. Representative images of Dicty growing on Dd and Pcc on MPMs are shown in FIG. 3A.

No Dicty strains produced a statistically significant reduction in Dd viability compared to the non-treated control. However, treating Dd lawns with Cohen 36, Cohen 9, WS-15, WS-20, and WS-69 consistently reduced the number of viable bacteria by approximately 100,000-fold compared to the non-treated control (FIG. 3B). Cohen 9 was the only Dicty strain that produced a statistically significant reduction in viability of Pcc compared to the non-treated control (FIG. 3C). Other Dicty strains capable of reducing the number of viable Pcc by at least 100,000-fold were Cohen 35, Cohen 36, WS-647, and WS-69 (FIG. 3C).

It was observed that Dicty strains Cohen 9, Cohen 36, and WS-69 were capable of feeding on both Dd and Pcc when these bacteria were cultured on SM2 agar and MPMs (FIGS. 1 and 3). These strains were also particularly effective feeders as all three reduced the number of viable Dd and Pcc on MPMs at 10° C. by 100,000-fold compared to the non-treated control (FIGS. 3B and 3C).

To determine if these strains could suppress soft rot development on seed potato tubers, tubers were tab-inoculated with Dd or Pcc and treated with spores from each Dicty strain. Seed potatoes were surface-sterilized and punctured using a sterile screw to a depth of 1.5 mm. Overnight cultures of Dd and Pcc were suspended in 10 mM potassium phosphate buffer, diluted to an OD600 of approximately 0.003, and administered as a 5 μL drop into the wound. Next, 5 of a Dicty spore suspension (100,000 spores) was added to the wound. Inoculated seed potatoes were placed in a plastic container with moist paper towels and were misted with water twice a day to maintain a high humidity. After 3 days at room temperature, seed potatoes were sliced in half and the area of macerated tissue was quantified using ImageJ.

All three strains reduced the severity of soft rot caused by Dd and Pcc (FIG. 4). Cohen 36 was the most effective strain on both Dd and Pcc: reducing the area of tissue maceration by 60% and 35%, respectively (FIG. 4B). Treating seed potatoes with WS-69 reduced the area of tissue maceration by 50% and 30% for Dd and Pcc, respectively (FIG. 4B). Finally, Cohen 9 was the least effective, but still able to reduce tissue maceration caused by Dd and Pcc by 25% and 20%, respectively (FIG. 4B).

FIG. 7 shows that three Dicty isolates control Dd and Pcc in seed tubers (at 25° C.). Two sets of data from different weeks were normalized to the Dickeya or Pectobacterium only bacterial control. The average area of macerated potato tissue measured in mm2 was set as “1” or “100%”. The average of all the other treatments including Dicty were divided by bacteria only control and multiplied by 100 to obtain a percentage. Each set contained 5 tubers per treatment.

Dicty should be capable of sporulating at temperatures as cold as 10° C. on a potato surface if they are applied as a one-time pre-planting or post-harvest treatment. Sporulation was assessed by inoculating small potato discs (5×6 mm) with 10 μL of Dd or Pcc suspensions at an OD600 of 3×10−5 and Dicty spores at a concentration of 1×107 spores/mL. Potato discs were kept in a covered 96-well plate for two weeks at 10° C. followed by visual inspection for son using a dissecting microscope. Representative images of a strain producing many sori (WS-517) and a strain producing few sori (WS-69) are shown in FIG. 5. Of the 11 strains evaluated, only Cohen 9 and WS-20 were unable to sporulate in the presence of both pathogens (Table 1).

TABLE 1
Assessment of Dicty sporulation at 10° C. on potato
in the presence of Dd or Pcc. A (✓) indicates sori
have been observed while a ( [Figure (not displayed)]  ) means they have not.
Dicty strainDdPcc
Cohen 9[Figure (not displayed)]
Cohen 36
WS-69
WS-517
WS-588
WS-606
WS-15
WS-20[Figure (not displayed)]
DC-7
DC-61
WS-116d

Example 2

This example describes the use of a high throughput screening assay to identify Dicty strains from Alaska (e.g., BAC10A, BAF6A, BAC3A, NW2, KB4A (ATCC® MYA-4262™) SO8B, SO3A, BAF9B, IC2A (ATCC® MYA-4259™), AK1A1 (ATCC® MYA-4272™) PBF4B (ATCC® MYA-4263), PBF8B, BSB1A, SO5B (ATCC® MYA-4249), PBF3C, PBF6B, NW2B, NW10B (ATCC® MYA-4271™), PBF9A, IC5A (ATCC® MYA-4256TH), ABC8A (ATCC® MYA-4260), NW16B, ABC10B, ABB6B (ATCC® MYA-4261), BA4A (ATCC® MYA-4252), AKK5A, AKK52C, HP4 (ATCC® MYA-4286), HP8 (ATCC® MYA-4284), or NW9A) that feed on Dd and Pcc at 10° C. on potatoes.

Results from 11 Dicty strains screened against Dd at 10° C. are presented in FIG. 6. Data was analyzed for significance using a one-way analysis of variance (ANOVA; alpha =0.05) with Tukey's honest significant difference (HSD) test to compare means between the treatments and the No Dicty control. A reduction in Dd proliferation when potato discs were treated with Dicty strains Cohen 9, Cohen 36, WS-15, Maryland 18a, BAF6A, NW2, and SO3A.

The Alaskan Dicty strains, and those identified in Example 1, are further tested against coinfections of Dd and Pcc. It is useful to identify Dicty strains that can suppress Dd and Pcc coinfections as these two pathogens have been isolated together from diseased potatoes (15). The ability of Dicty strains with different feeding preferences (Dd vs. Pcc) to complement each other when administered as a cotreatment is assayed.

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Patent 2024
A-A-1 antibiotic Agar Amoeba Bacteria Biofilms Buffers Coinfection Cold Temperature Combined Modality Therapy Dickeya Dictyosteliida Enterobacteriaceae Extracellular Polymeric Substance Matrix Extracellular Polymeric Substances High-Throughput Screening Assays Human Body Humidity Microscopy neuro-oncological ventral antigen 2, human Nutrients Pathogenicity Pectobacterium Phenotype Plant Tubers polycarbonate potassium phosphate Scanning Electron Microscopy Solanum tuberosum Sporangia Spores Sterility, Reproductive Strains Technique, Dilution Tissue, Membrane Tissues Wounds

Example 4

The antibacterial efficacy of unaltered and experimental (doped) dental adhesive resins against non-disrupted cariogenic (caries producing) biofilms was further assessed in terms of relative luminescence units (RLUs) using a real-time luciferase-based bioluminescence assay. Toward this end, experimental dental adhesive resins containing either N—TiO2 NPs (5%-30%, v/v), N—F—TiO2 NPs (30%, v/v) and N—Ag—TiO2 NPs (30%, v/v) were synthesized by dispersing the nanoparticles in OBSP adhesive resin using a sonicator (4 cycles of 1 min, intervals of 15-sec between cycles; Q700, QSonica, USA). Two non-antibacterial (OBSP, and Scotchbond Multipurpose, 3M ESPE, USA) and one antibacterial (Clearfil SE Protect, Kuraray, Noritake Dental Inc., Japan) commercially available dental adhesive resins were also tested for antibacterial functionalities. Streptococcus mutans biofilms were grown (UA 159-ldh, JM 10; 37° C., microaerophilic) on the surfaces of disk-shaped specimens (n=18/group, d=6.0 mm, t=0.5 mm) for either 24 or 48 hours with or without continuous visible light irradiation (405±15 nm). One set of specimens was fabricated with OBSP and was treated with Chlorhexidine 2% (2 min) that served as our control group. Results for the antibacterial efficacies of both unaltered and experimental dental adhesive resins containing either doped or co-doped TiO2 NPs under continuous visible light irradiation for either 24 or 48 hours, demonstrated that all groups tested displayed similar antibacterial behaviors under continuous visible light irradiation. Such findings suggest that under the conditions investigated (wavelength and power intensity), visible light irradiation had a very strong antibacterial behavior that took place independently of the antibacterial activity of the substrate where biofilms were grown (either antibacterial or not). Such impact made impossible the determination of the materials' real antibacterial efficacies under such light irradiation conditions.

Experiments were then conducted under dark conditions; bacteria were grown in dark conditions for either 24 and 48 hours. The results indicated that the TiO2-containing adhesive resins were more antibacterial than commercially available non-antibacterial dental adhesive resins (such as OptiBond Solo Plus and Scotchbond Multipurpose). The experimental dental adhesive resins containing 30% (v/v) of nanoparticles (N—TiO2 NPs, N—F—TiO2 NPs and N—Ag—TiO2 NPs) displayed antibacterial efficacies in dark conditions that were similar to Clearfil SE Protect (Fluoride-releasing material, Kuraray, Noritake Dental Inc., Japan). S. mutans biofilms grown on specimens treated with chlorhexidine 2% (2 min) displayed the lowest RLU values amongst all groups investigated, thereby confirming the strong antibacterial behavior of non-immobilized chlorhexidine. In addition, the antibacterial effect was demonstrated to be concentration-dependent, wherein experimental adhesive resins containing higher concentrations of antibacterial nanoparticles (either doped or co-doped) displayed stronger antibacterial effects against non-disrupted S. mutans biofilms. Since long intra-oral irradiation periods (24-hour and 48-hour) are impractical and clinically not feasible, associated with the fact that these materials are intended to be used in the oral cavity's dark conditions, these results were considered of paramount importance and clinically relevant for the commercialization pathway of recently developed antibacterial and bioactive nano-filled dental adhesive resins.

Optical and mechanical properties of both unaltered and experimental dental adhesive resins containing 5%-30% (v/v, 5% increments) of N—TiO2 NPs were assessed in terms of color stability and biaxial flexure strength. Color stability (n=5) and biaxial flexure strength (n=8) specimens (d=6.0 mm, t=0.5 mm) were fabricated and tested using a color analysis software (ScanWhite, Darwin Syst., Brazil) and an Instron universal testing machine (cross-head rate=1.27 mm/min), respectively. Color stability measurements were performed immediately after specimen fabrication and after water storage (1, 2, 3, 4, 5, 6 months; 37° C.). The color stability results demonstrated that specimens fabricated using either unaltered or experimental dental adhesive resins containing N—TiO2 NPs (5%-30%, v/v) were subjected to color changes induced by long-term water storage. The highest color variations were observed at two months of water storage (37° C.) for specimens pertaining to experimental groups containing either 5% or 10% of N—TiO2 NPs. Specimens fabricated with unaltered OptiBond Solo Plus have demonstrated color variations that were similar to the color variations observed for the experimental group containing 20% N—TiO2 NPs. Specimens fabricated with 30% N—TiO2 NP-containing dental adhesive resins have shown the least amount of color variation throughout the investigation time (6-mo), and therefore, were considered as the most color stable amongst all materials investigated. From the esthetic standpoint, the human eye can only detect differences in color above a certain threshold (ΔE≥3).

In at least one embodiment, dental composition specimens fabricated with at 30% N—TiO2 NPs displayed color variations that were either lower than or close to the human eye detection capability, thereby corroborating the long-term use of these highly esthetic experimental dental adhesive resins. In at least certain embodiments, the dental compositions contain at least 5% to 80% (v/v) of doped-TiO2 NPs as disclosed herein, such as at least 5% (v/v), at least 6% (v/v), at least 7% (v/v), at least 8% (v/v), at least 9% (v/v), at least 10% (v/v), at least 11% (v/v), at least 12% (v/v), at least 13% (v/v), at least 14% (v/v), at least 15% (v/v), at least 16% (v/v), at least 17% (v/v), at least 18% (v/v), at least 19% (v/v), at least 20% (v/v), at least 21% (v/v), at least 22% (v/v), at least 23% (v/v), at least 24% (v/v), at least 25% (v/v), at least 26% (v/v), at least 27% (v/v), at least 28% (v/v), at least 29% (v/v), at least 30% (v/v), at least 31% (v/v), at least 32% (v/v), at least 33% (v/v), at least 34% (v/v), at least 35% (v/v), at least 36% (v/v), at least 37% (v/v), at least 38% (v/v), at least 39% (v/v), at least 40% (v/v), at least 41% (v/v), at least 42% (v/v), at least 43% (v/v), at least 44% (v/v), at least 45% (v/v), at least 46% (v/v), at least 47% (v/v), at least 48% (v/v), at least 49% (v/v), at least 50% (v/v), at least 51% (v/v), at least 52% (v/v), at least 53% (v/v), at least 54% (v/v), at least 55% (v/v), at least 56% (v/v), at least 57% (v/v), at least 58% (v/v), at least 59% (v/v), at least 60% (v/v), at least 61% (v/v), at least 62% (v/v), at least 63% (v/v), at least 64% (v/v), at least 65% (v/v), at least 66% (v/v), at least 67% (v/v), at least 68% (v/v), at least 69% (v/v), at least 70% (v/v), at least 71% (v/v), at least 72% (v/v), at least 73% (v/v), at least 74% (v/v), at least 75% (v/v), at least 76% (v/v), at least 77% (v/v), at least 78% (v/v), at least 79% (v/v), or at least 80% (v/v), with the balance comprising the curable adhesive resin material, and optionally other components as described elsewhere herein.

The present results demonstrate that experimental dental adhesive resins containing varying concentrations of N—TiO2 NPs display biaxial flexure strengths that are either similar or better than the strength observed for specimens fabricated with the unaltered OBSP. No differences were observed among the flexure strengths of experimental groups, thereby indicating that the presently disclosed materials can behave very similar to commercially available materials when subjected to masticatory forces.

Specimens (d=6.0 mm, t=0.5 mm) of the unaltered resins and experimental dental adhesive resins containing 30% N—TiO2 NPs, 30% N—F—TiO2 NPs and 30% N—Ag—TiO2 NPs were fabricated and characterized using the state of the art scanning electron microscope. This dual focused ion-beam microscope (Dual-FIB SEM/EDS) is capable, through a destructive process, to characterize and map the chemical composition and distribution of elements in three dimensions. The 3-D characterization and localization of components clearly demonstrated that experimental materials containing co-doped nanoparticles (e.g., 30% v/v, N—F—TiO2 NPs) displayed an optimized dispersion of filler particles (part of the original composition) when compared to the filler particle distribution observed on specimens fabricated with the unaltered dental adhesive resin. The 3-D images demonstrated that the experimental adhesive resins had more filler particles per unit volume with a more homogeneous size distribution than the filler fraction and size distribution observed on OptiBond Solo Plus samples. In addition, results showed that larger and more agglomerated filler particles tend to result in a polymer matrix containing more pores per unit volume. This finding was corroborated by the pore-size distribution calculated for the unaltered samples and experimental dental adhesive resin samples, where it is possible to observe that the quantity and sizes of pores formed in experimental materials were smaller when compared to the unaltered OptiBond Solo Plus samples.

In at least one embodiment, the present disclosure includes a dental composition, comprising doped and/or coated TiO2 NPs, and a curable resin material, wherein the curable resin material comprises a polymer precursor component. The TiO2 NPs may comprise at least one dopant or coating selected from the group consisting of N (nitrogen), Ag (silver), F (fluorine), P (phosphorus), and PO4 (phosphate). As noted above, in non-limiting embodiments, the dental composition may comprise a volume to volume ratio of doped TiO2 NPs to curable resin material in a range of 1% to 80% (v/v), 5% to 50% (v/v), or 10% to 40% (v/v), for example. The polymer precursor component may be photocurable. The polymer precursor may be selected from the group consisting of acrylates, methacrylates, dimethacrylates, epoxies, vinyls and thiols. The polymer precursor may be selected from the group consisting of ethylenedimethacrylate (“EDMA”), bisphenol A glycidyl methacrylate (“BisGMA”), triethyleneglycol dimethacrylate (“TEGDMA”), 1,6-bis(methacryloxy-2-ethoxycarbonylamino)-2,4,4-trimethylhexane (UDMA), pyromellitic glycerol dimethacrylate (PMGDM), and 2-hydroxyethyl methacrylate (HEMA). The dental composition may comprise at least one solvent. The at least one solvent may be selected from the group consisting of water, ethanol, methanol, toluene, ethyl ether, cyclohexane, isopropanol, chloroform, ethyl acetate, acetone, hexane, and heptanes. The dental composition may comprise a polymerization initiator. The dental composition may comprise a filler. The dental composition may be selected from the group consisting of dental resins, dental bonding agents, dental adhesives, dental cements, dental restoratives, dentals coatings, dental sealants, acrylic resins, and denture teeth. The dental composition may comprise bioactive and/or antibacterial activity in the absence of visible or ultraviolet light. The dental composition may be used to form a hardened dental article after a photocuring step. In at least one embodiment, the disclosure includes an in vivo dental process, comprising applying the dental composition to at least one of a dental restorative and a dental substrate, and causing the dental restorative to be bonded to the dental substrate via the dental composition after a step of photocuring the dental composition.

Accordingly, the present disclosure is directed to at least the following non-limiting embodiments:

Clause 1. In at least one embodiment the present disclosure includes a dental composition, comprising doped TiO2 nanoparticles, and a curable resin material, wherein the curable resin material comprises a polymer precursor component.

Clause 2. The dental composition of clause 1, wherein the doped TiO2 nanoparticles comprise at least one dopant selected from the group consisting of N (nitrogen), Ag (silver), F (fluorine), P (phosphorus), and PO4 (phosphate).

Clause 3. The dental composition of clause 1 or 2, wherein the doped TiO2 nanoparticles further comprise at least one second dopant selected from the group consisting of N, Ag, F, P, and PO4.

Clause 4. The dental composition of any one of clauses 1-3, comprising a volume to volume ratio of doped TiO2 nanoparticles to curable resin material in a range of 1% to 80% (v/v).

Clause 5. The dental composition of any one of clauses 1-4, comprising a volume to volume ratio of doped TiO2 nanoparticles to curable resin material in a range of 5% to 50% (v/v).

Clause 6. The dental composition of any one of clauses 1-5, comprising a volume to volume ratio of doped TiO2 nanoparticles to curable resin material in a range of 10% to 40% (v/v).

Clause 7. The dental composition of any one of clauses 1-6, wherein the polymer precursor component is photocurable.

Clause 8. The dental composition of any one of clauses 1-7, wherein the polymer precursor is selected from the group consisting of acrylates, methacrylates, dimethacrylates, epoxies, vinyls and thiols.

Clause 9. The dental composition of any one of clauses 1-8, wherein the polymer precursor is at least one selected from the group consisting of ethylenedimethacrylate (EDMA), bisphenol A glycidyl methacrylate (BisGMA), triethyleneglycol dimethacrylate (TEGDMA), 1,6-bis(methacryloxy-2-ethoxycarbonylamino)-2,4,4-trimethylhexane (UDMA), pyromellitic glycerol dimethacrylate (PMGDM), and 2-hydroxyethyl methacrylate (HEMA).

Clause 10. The dental composition of any one of clauses 1-9, further comprising at least one solvent.

Clause 11. The dental composition of any one of clauses 1-10, further comprising a solvent selected from the group consisting of water, ethanol, methanol, acetone, toluene, ethyl ether, cyclohexane, isopropanol, chloroform, ethyl acetate, hexane, and heptanes.

Clause 12. The dental composition of any one of clauses 1-11, further comprising a polymerization initiator.

Clause 13. The dental composition of any one of clauses 1-12, further comprising a filler.

Clause 14. The dental composition of any one of clauses 1-13, wherein the curable resin material is selected from the group consisting of dental resins, dental bonding agents, dental adhesives, dental cements, dental restoratives, dentals coatings, dental sealants, acrylic resins, and denture teeth.

Clause 15. The dental composition of any one of clauses 1-14, comprising bioactive and/or antibacterial activity in the absence of visible or ultraviolet light.

Clause 16. A kit for forming a dental composition, the kit comprising doped TiO2 nanoparticles, and a curable resin material, wherein the curable resin material comprises a polymer precursor component.

Clause 17. The kit of clause 16, wherein the doped TiO2 nanoparticles comprise at least one dopant selected from the group consisting of N (nitrogen), Ag (silver), F (fluorine), P (phosphorus), and PO4 (phosphate).

Clause 18. The kit of clause 16 or 17, wherein the doped TiO2 nanoparticles further comprise at least one second dopant selected from the group consisting of N, Ag, F, P, and PO4.

Clause 19. The kit of any one of clauses 16-18, comprising sufficient doped TiO2 nanoparticles and curable resin material such that the dental composition comprises a volume to volume ratio of doped TiO2 nanoparticles to curable resin material in a range of 1% to 80% (v/v).

Clause 20. The kit of any one of clauses 16-19, comprising sufficient doped TiO2 nanoparticles and curable resin material such that the dental composition comprises a volume to volume ratio of doped TiO2 nanoparticles to curable resin material in a range of 5% to 50% (v/v).

Clause 21. The kit of any one of clauses 16-20, comprising sufficient doped TiO2 nanoparticles and curable resin material such that the dental composition comprises a volume to volume ratio of doped TiO2 nanoparticles to curable resin material in a range of 10% to 40% (v/v).

Clause 22. The kit of any one of clauses 16-21, wherein the polymer precursor component is photocurable.

Clause 23. The kit of any one of clauses 16-22, wherein the polymer precursor is selected from the group consisting of acrylates, methacrylates, dimethacrylates, epoxies, vinyls and thiols.

Clause 24. The kit of any one of clauses 16-23, wherein the polymer precursor is at least one selected from the group consisting of ethylenedimethacrylate (EDMA), bisphenol A glycidyl methacrylate (BisGMA), triethyleneglycol dimethacrylate (TEGDMA), 1,6-bis(methacryloxy-2-ethoxycarbonylamino)-2,4,4-trimethylhexane (UDMA), pyromellitic glycerol dimethacrylate (PMGDM), and 2-hydroxyethyl methacrylate (HEMA).

Clause 25. The kit of any one of clauses 16-24, further comprising at least one solvent.

Clause 26. The kit of any one of clauses 16-25, further comprising a solvent selected from the group consisting of water, ethanol, methanol, acetone, toluene, ethyl ether, cyclohexane, isopropanol, chloroform, ethyl acetate, hexane, and heptanes.

Clause 27. The kit of any one of clauses 16-26, further comprising a polymerization initiator for combining with the doped TiO2 nanoparticles, and curable resin material.

Clause 28. The kit of any one of clauses 16-27, further comprising a filler for combining with the doped TiO2 nanoparticles, and curable resin material.

Clause 29. The kit of any one of clauses 16-28, wherein the curable resin material is selected from the group consisting of dental resins, dental bonding agents, dental adhesives, dental cements, dental restoratives, dentals coatings, dental sealants, acrylic resins, and denture teeth.

Clause 30. The kit of any one of clauses 16-29, wherein the dental composition has bioactive and/or antibacterial activity in the absence of visible or ultraviolet light.

Clause 31. A hardened dental article formed from the dental composition of any one of clauses 1-15, after the dental composition has been photocured.

Clause 32. An in vivo dental process, comprising: applying a dental composition to a dental surface, the dental composition comprising doped TiO2 nanoparticles, and a curable resin material, wherein the curable resin material comprises a polymer precursor component; and causing the dental composition to be bonded to the dental surface by photocuring the dental composition.

Clause 33. The dental process of clause 32, wherein the dental surface is at least one of a dental restorative and a dental substrate.

Clause 34. The dental process of clause 32 or 33, wherein the doped TiO2 nanoparticles comprise at least one dopant selected from the group consisting of N (nitrogen), Ag (silver), F (fluorine), P (phosphorus), and PO4 (phosphate).

Clause 35. The dental process of any one of clauses 32-34, wherein the doped TiO2 nanoparticles further comprise at least one second dopant selected from the group consisting of N, Ag, F, P, and PO4.

Clause 36. The dental process of any one of clauses 32-35, wherein the dental composition comprises a volume to volume ratio of doped TiO2 nanoparticles to curable resin material in a range of 1% to 80% (v/v).

Clause 37. The dental process of any one of clauses 32-36, wherein the dental composition comprises a volume to volume ratio of doped TiO2 nanoparticles to curable resin material in a range of 5% to 50% (v/v).

Clause 38. The dental process of any one of clauses 32-37, wherein the dental composition comprises a volume to volume ratio of doped TiO2 nanoparticles to curable resin material in a range of 10% to 40% (v/v).

Clause 39. The dental process of any one of clauses 32-38, wherein the polymer precursor component is photocurable.

Clause 40. The dental process of any one of clauses 32-39, wherein the polymer precursor is selected from the group consisting of acrylates, methacrylates, dimethacrylates, epoxies, vinyls and thiols.

Clause 41. The dental process of any one of clauses 32-40, wherein the polymer precursor is at least one selected from the group consisting of ethylenedimethacrylate (EDMA), bisphenol A glycidyl methacrylate (BisGMA), triethyleneglycol dimethacrylate (TEGDMA), 1,6-bis(methacryloxy-2-ethoxycarbonylamino)-2,4,4-trimethylhexane (UDMA), pyromellitic glycerol dimethacrylate (PMGDM), and 2-hydroxyethyl methacrylate (HEMA).

Clause 42. The dental process of any one of clauses 32-41, wherein the dental composition further comprises at least one solvent.

Clause 43. The dental process of any one of clauses 32-42, further comprising a solvent selected from the group consisting of water, ethanol, methanol, acetone, toluene, ethyl ether, cyclohexane, isopropanol, chloroform, ethyl acetate, hexane, and heptanes.

Clause 44. The dental process of any one of clauses 32-43, wherein the dental composition further comprises a polymerization initiator.

Clause 45. The dental process of any one of clauses 32-44, wherein the dental composition further comprises a filler.

Clause 46. The dental process of any one of clauses 32-45, wherein the curable resin material is selected from the group consisting of dental resins, dental bonding agents, dental adhesives, dental cements, dental restoratives, dentals coatings, dental sealants, acrylic resins, and denture teeth.

Clause 47. The dental process of any one of clauses 32-46, wherein after curing, the dental composition has bioactive and/or antibacterial activity in the absence of visible or ultraviolet light.

Clause 48. The dental process of any one of clauses 32-47, wherein the dental surface has been acid-etched prior to the application of the dental composition thereon.

While the present disclosure has been described herein in connection with certain embodiments so that aspects thereof may be more fully understood and appreciated, it is not intended that the present disclosure be limited to these particular embodiments. On the contrary, it is intended that all alternatives, modifications and equivalents are included within the scope of the present disclosure as defined herein. Thus the examples described above, which include particular embodiments, will serve to illustrate the practice of the inventive concepts of the present disclosure, it being understood that the particulars shown are by way of example and for purposes of illustrative discussion of particular embodiments only and are presented in the cause of providing what is believed to be the most useful and readily understood description of procedures as well as of the principles and conceptual aspects of the present disclosure. Changes may be made in the formulation of the various compositions described herein, the methods described herein or in the steps or the sequence of steps of the methods described herein without departing from the spirit and scope of the present disclosure. Further, while various embodiments of the present disclosure have been described in claims herein below, it is not intended that the present disclosure be limited to these particular claims.

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Patent 2024
2-hydroxyethyl methacrylate Acetone Acids Acrylates Acrylic Resins Anti-Bacterial Agents Bacteria Biofilms Bioluminescent Measurements Bisphenol A-Glycidyl Methacrylate chemical composition Chlorhexidine Chloroform Cyclohexane Dental Caries Dental Cements Dental Resins Dentures Epoxy Resins Ethanol ethyl acetate Ethyl Ether Fluorides Fluorine Focused Ion Beam Scanning Electron Microscopy Glycerin Head Heptanes Hexanes Homo sapiens Isopropyl Alcohol JM 10 Light Light, Visible Luciferases Luminescence Methacrylates Methanol Microscopy Mouth Diseases Nitrogen OptiBond SOLO Phosphates Phosphorus Pit and Fissure Sealants Polymerization Polymers Polyvinyl Chloride Radiotherapy Resins, Plant Scanning Electron Microscopy Sclerosis Scotchbond Silver Solvents Streptococcus mutans Sulfhydryl Compounds T.E.R.M. composite resin titanium dioxide Toluene Tooth triethylene glycoldimethacrylate Ultraviolet Rays Vision

Example 2

Antimicrobial activity of the compositions according to the invention has been compared with compositions comprising either only the modified clay particle comprising an antimicrobial compound (‘CPC’, prepared as in Ex. 1), or only a nonionic triblock copolymer (‘pluronic’). Salivary flora and actives (according to Table 1 below) were co-incubated overnight and at the end of incubation biofilm was stained with crystal violet. Detailed protocol as mentioned below:

Treatment and Biofilm Formation

Early morning saliva samples before brushing was collected from 4-5 people, pooled together and washed twice in saline. Absorbance was set to 0.2 OD620 nm in ultra-filtered tryptone yeast extract broth (2% sucrose) and used for experiments as mentioned in further steps. 2 ml of set culture was added into 24/12 well plate to which test actives at varying concentrations were added into each of the wells. The plate was incubated anaerobically overnight at 37° C.

Staining Protocol

At the end overnight incubation, decant the plate out over a biohazard bag to remove all the planktonic bacteria. Rinse the plate in a tray of water and decant the water out over the tray. This step was done once to remove the loosely adhered biofilm. Place the plate on a blotting paper/paper towel over the bench top. Stain all the test wells with 1 ml of 1% Crystal violet stain (CV) for 10 min. This step was done using a pipette. Decant the plate out over the biohazard discard bag to remove all the stain. Rinse the plate in a tray of water and pour the water out over the tray. This step was done thrice consecutively, in three separate trays of water. (Each tray procedure was repeated thrice-total 9 rinse). Cover the bench top with more blotting paper/paper towel and hit the plate against the bench top until all the wells are free of any liquid. This step was done to ensure that only CV remaining is bound to a biofilm at the bottom of a well. Leave the plate face up on the bench top at room temperature (23+2° C.) until it dries completely. Add 1 ml of 33% glacial acetic acid to the test wells to solubilize the biofilm bound CV stain. Allow the acetic acid to sit for 10 mins. Pipette up and down the mix of acetic acid and CV in the wells.

Transfer 10 μl of above solution mix to 90 ul of 33% acetic acid in a well of flat bottom 96 well plate. Mix the solution well and absorbance is taken at 540 nm. All the test actives were done in duplicates.

TABLE 1
% Biofilm
Bacterial control100
0.01% CPC-Clay 83
0.001% Pluronic 76
0.001% Pluronic + 0.01% CPC-Clay 29
0.001% Pluronic + 0.005% CPC-Clay 52

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Patent 2024
Acetic Acid Bacteria Biofilms Biohazards Clay Desiccation Face Microbicides Plankton Pluronics Saline Solution Saliva Stains Strains Sucrose Violet, Gentian Yeast, Dried
We used LEfSe v1.0.0 to investigate potential interactions between the abundance of 66 predicted functional pathways76 (link)–80 (link) involved in biofilm formation, in high- and low-resistome diversity groups, with a threshold of logarithmic LDA 2.0. We categorised samples according to their resistome diversity into the high and low Shannon score group. The cut off Shannon index scores were based on distribution, with a mean of 2.10 (below 2.10 = low diversity, above 2.10 = high diversity). Biofilm-related pathways were normalised on a per sample basis to sum to 1.0.
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Publication 2023
Biofilms
At the clinical visit, parents/carers and twins were instructed not to brush their teeth from 7 pm the previous evening until after the clinical visit and not to eat or drink in the half an hour before the appointment. Supra-gingival plaque biofilm samples were taken by a team of calibrated clinicians (registered dentist, oral health therapist or a supervised dental student) wearing sterile gloves. Oral biofilm samples were obtained using sterile Cultiplast® Tampone Swabs (LP Italiana, Milan, Italy). The labial/buccal surfaces and gingival margins of teeth in the maxillary and mandibular right-hand side were gently but thoroughly swabbed for 30 seconds per quadrant. The swab was inserted into a tube containing VMGII. The cotton tip was fully submerged, the wooden handle was broken so the swab was left in the media. The tube was sealed and placed directly on dry ice at collection. All samples were transferred to −80 °C freezer within 4 h of collection.
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Publication 2023
Biofilms Dental Plaque Dentist Dry Ice Gingiva Gossypium Lip Mandible Maxilla Neoplasm Metastasis Parent Sterility, Reproductive Students, Dental Tooth Twins

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More about "Biofilms"

Biofilms are complex, adherent communities of microorganisms that thrive in diverse environments.
These microbial structures are embedded in a self-produced extracellular matrix, contributing to a variety of medical, industrial, and environmental processes.
Understanding biofilms is crucial for fields like microbiology, infection control, and environmental remediation.
The LIVE/DEAD BacLight Bacterial Viability Kit and Crystal violet staining are common techniques used to visualize and quantify biofilms.
SYTO9 and propidium iodide dyes can distinguish between live and dead cells within the biofilm.
Confocal laser scanning microscopy (LSM 710) enables 3D imaging of biofilm structure and composition.
The FilmTracer LIVE/DEAD Biofilm Viability Kit provides a comprehensive solution for assessing biofilm viability.
Quantitative analysis of biofilms can be performed using a microplate reader, such as the SpectraMax M5, and data analysis software like Prism 8.
These tools allow researchers to measure parameters like biomass, metabolic activity, and cell viability.
The use of phosphate-buffered saline (PBS) is common for biofilm sample preparation and washing.
PubCompare.ai's innovative AI tools can help optimize biofilms research by locating the best protocols from literature, preprints, and patents, enabling reproducible and accuarate results.
This AI-driven platform empowers researchers to discover the most relevant information and streamline their biofilms studies.