The largest database of trusted experimental protocols
> Living Beings > Bacterium > Mycobacterium avium Complex

Mycobacterium avium Complex

Mycobacterium avium Complex: A group of closely related mycobacteria species that can cause serious infections in humans, particularly in those with compromised immune systems.
These opportunistic pathogens can lead to pulmonary disease, lymphadenitis, and disseminated illness.
Accurate diagnosis and effective treatment protocols are crucial for managing Mycobacterium avium Complex infections.
Reserchers can optimize their investigations using PubCompare.ai, an AI-driven platform that helps locate the best protocols from literature, pre-prints, and patents, ensuring reproducibility and accuracy in Mycobacterim avium Complex research.

Most cited protocols related to «Mycobacterium avium Complex»

Simulated Treatment Comparison (STC) is a modification of covariate adjustment,21 which fits an outcome model using the IPD in the AB trial:
g(μt(AB)(X))=β0+β1TX+(βB+β2TXEM)I(t=B),
where β0 is an intercept term, β1 is a vector of coefficients for prognostic variables, βB is the relative effect of treatment B compared to A at X=0 , β2 is a vector of coefficients for effect modifiers XEM (a subvector of the full covariate vector X ), and μt(AB)(X) is the expected outcome of an individual assigned treatment t with covariate values X , which is transformed onto a chosen linear predictor scale with link function g(·) .
The model in equation (8) is a more general form of that given by Ishak et al.7 (link), which does not include any effect modifier terms. The STC literature advocates forming indirect comparisons directly on the natural outcome scale with g(·) the identity link in equation (4) or (5); however, this leads to scale conflicts10 if the same link is not used in the outcome model (8) (see the following section on the importance of scale). Y^A(AC) and Y^B(AC) may be predicted from the outcome regression by substituting in mean covariate values to obtain Y^A(AC)=g1(β^0+β^1TX¯(AC)) and Y^B(AC)=g1(β^0+β^1TX¯(AC)+β^B+β^2TX¯(AC)EM) . These estimators are systematically biased whenever g(·) is not the identity function, because the mean outcome depends on the full distribution of the covariates and not just their mean.7 (link) Instead of substituting in mean covariate values in this case, Ishak et al. suggest that estimates are obtained by first drawing samples from the joint covariate distribution in the AC trial and then averaging over the predicted outcomes based on the regression model. This simulation approach, however, inflates uncertainty of the relative effect estimates.
Standard tools for model checking (such as AIC/DIC, examining residuals, among others) may be used when constructing the outcome model in the AB trial; however (as with MAIC), additional assumptions are required to predict absolute outcomes in the AC population, which are difficult to test with the limited data available.
Full text: Click here
Publication 2017
Cloning Vectors Joints Mycobacterium avium Complex Seizures
We conducted meta-analyses for groups of effect estimates that related similar WASH access or practices (e.g., latrine availability and/or use became “sanitation access”) to a common outcome. Potential outcomes included infection with a specific STH (i.e., A. lumbricoides, T. trichiura, hookworm, and S. stercoralis) or any STH generally. Note that “any STH” reflected infection with an individual species or co-infection with multiple species when authors reported aggregated STH infection results. Meta-analyses were performed for groups of independent effect estimates that numbered three or greater and shared a similar exposure and infection outcome. A study that measured several WASH components could contribute to multiple meta-analyses, but could only supply one effect estimate for any single meta-analysis.
We employed random-effects models to account for the expected heterogeneity between studies [36] (link). Only adjusted estimates were utilized to limit the impact of confounding on pooled effect measures [37] . When necessary, we inverted estimates to reflect the effect of WASH, rather than the absence of WASH. This inversion was necessary in order to ensure enough study estimates were available for meta-analysis, but could have resulted in additional heterogeneity. For example, the inverse of “no sanitation access” may be similar to, but distinct from, “sanitation access” when assessed by questionnaire due to bias associated with socially desirable responses. Further, the presence of WASH access or practices may not necessarily be the same as the inverse effect of their absence, especially if important confounders or effect modifiers remain unexplored. Estimates of effect not included in meta-analyses were summarized in the text. The meta-analysis package MAIS for Stata version 12 (StataCorp) was used to perform the random-effects meta-analyses with the DerSimonian and Laird method [38] (link). The natural log of reported ORs was the dependent variable. CIs use the 95% level unless otherwise noted.
Full text: Click here
Publication 2014
Coinfection Genetic Heterogeneity Hookworm Infections Infection Inversion, Chromosome Mycobacterium avium Complex
Medical records provided information on patients’ sex, age, and HIV transmission risk factor. Risk factor was coded as injection drug use (IDU, including IDU in conjunction with other risk factors), men who have sex with men (MSM), heterosexual (HET), or other. Race/ethnicity categories were White, Black, Hispanic, and other. Age and median CD4 count were categorized to capture possible non-linear associations with costs. Age as of July 1, 2006 was categorized as 18–29, 30–39, 40–49, and 50 or older. We categorized the median CD4 count recorded in 2006 as ≤ 50 cells/mm3, 51–200 cells/mm3, 201–350 cells/mm3, 351–500 cells/mm3, and > 500 cells/mm3.
All 10 sites provided data on inpatient days, outpatient visits, CD4 and viral load tests, and HIV-related medications. We refer to these as “major cost components”. Based on medical record data, we counted the total numbers of outpatient visits to the HIV primary care provider, inpatient days, CD4 tests, and HIV-1 RNA tests in 2006 for each patient. Medical record data provided detailed information on all prescribed antiretroviral (ARV) and opportunistic illness (Pneumocystis jiroveci pneumonia and Mycobacterium avium complex) prophylaxis (OI Px) medications, including start and stop dates. For each patient, we calculated the number of months in 2006 that each medication had been prescribed. In addition, 3 of the 10 sites provided information on visits to the emergency department, use of non-HIV medications (i.e., other than antiretrovirals and OI Px medications), and resistance tests (genotype and phenotype).
Publication 2010
CD4+ Cell Counts Cells Ethnicity Genotype Heterosexuals Hispanics HIV-1 Inpatient Mycobacterium avium Complex Outpatients Patients Pharmaceutical Preparations Phenotype Pneumocystosis Primary Health Care Transmission, Communicable Disease
Probes for FISH experiments were labeled using spectrum red or green dUTP (Abbott Molecular). For chromosome mapping experiments, slides of human normal male metaphase chromosome spreads (Applied Genetics) were denatured in 70% formamide/2× SSC for 5 min at 73°C. Slides were then dehydrated through a 70%–100% ethanol series, washed, and air dried. Denatured probe (50 ng/slide) combined with human COT-1 DNA (10 μg/slide) in 20 μL/slide Hybrisol VII (Qbiogene) was then added to the slides and allowed to hybridize for 24–48 h at 37°C in a humidified chamber. For CER satellite detection, hybridizations were performed with a 5′ FITC-labeled oligo and herring sperm DNA. Post-hybridization washes were 0.4× SSC/0.3% NP-40 for 2 min at 74°C followed by 2× SSC/0.1% NP-40 at ambient temperature for 1 min. Slides were air dried and mounted in Vectashield, including DAPI (Vector Laboratories). For 3D immuno-FISH experiments, cells were fixed, denatured, probed, and antibody stained as described previously (Mais et al. 2005 (link); Prieto and McStay 2007 (link)). Z-stacks of fluorescent images were captured using a Photometric Coolsnap HQ camera and Volocity 5 imaging software (Improvision) with a 63 Plan Apochromat Zeiss objective mounted on a Zeiss Axioplan2 imaging microscope. In some cases, extended focus projections of deconvolved Z-stacks (iterative restoration) are presented; in other cases, individual focal planes are shown. Movies (Supplemental Videos 1, 2) were prepared from 3D images constructed from deconvolved Z-stacks using Volocity 6 (Improvision). 3D images were rotated to create a series of bookmarks. The movies are an animation of the transitions between these bookmarks.
Publication 2013
Acid Hybridizations, Nucleic Cells Chromosomes Chromosomes, Human Cloning Vectors DAPI deoxyuridine triphosphate Ethanol Fishes Fluorescein-5-isothiocyanate formamide Homo sapiens Immunoglobulins Males Men Metaphase Microscopy Mycobacterium avium Complex Nonidet P-40 Oligonucleotides Photometry Sperm
For further analyses at the NRL, original tissue, macerated tissue and extracted DNA were sent by the RLs. A first analysis on DNAs was done by real-time PCR targeting insertion sequences IS6110 and IS1081 for MTBC identification, IS1245 for Mycobacterium avium complex (MAC) identification, and the 65 kDa heat shock protein gene (hsp65) for Mycobacterium sp. detection (Table 1). Real-time PCR assays were performed in a final volume of 25 μl using the TaqMan Fast Universal PCR Master Mix (Roche Diagnostics, Meylan, France) at a 1X final concentration, with primers at 300 nM and probes at 250 nM. PCR cycling comprised of 2 min at 50°C and 20 s at 95°C, followed by 50 cycles of 2-step amplification of 3 s at 95°C, and 30 s at 60°C. If necessary (negative or doubtful results) a second analysis was done with a new DNA extraction with the High Pure PCR Template Preparation Kit (Roche Diagnostics, Meylan, France) from the original tissue and the macerated lesion. Quality of the DNA extraction and PCR inhibition was tested with DiaControlDNATM (Diagenode, Thermo Fisher, USAdiagnostics, Belgium).
Identification of non-tuberculous mycobacteria species was done by sequencing using primers targeting the 65 kDa heat shock protein gene (hsp65) [12 (link)] or the β subunit of bacterial RNA polymerase sequence (rpoB) [13 (link)]. The obtained sequences were compared to the GenBank/EMBL/DDBJ databases using the BLAST program.
Full text: Click here
Publication 2018
Bacteria beta' subunit of RNA polymerase Biological Assay Diagnosis DNA, A-Form Genes Heat Shock Proteins Mycobacterium Mycobacterium avium Complex Nontuberculous Mycobacteria Oligonucleotide Primers Psychological Inhibition Real-Time Polymerase Chain Reaction Sequence Insertion Tissues

Most recents protocols related to «Mycobacterium avium Complex»

Forty children (21 males, mean age  ±  standard deviation (SD): 5.09  ±  3.79
years old) with sensorineural hearing loss who received their first CI in our
hospital from September 2018 to June 2020 were included in this study. These
children were right-handed according to an assessment with the Edinburgh
Handedness Inventory (Oldfield, 1971 (link)). They started to use hearing aids at a mean age of
2.30  ±  1.21 years old, and had used hearing aids with a mean duration of
2.79  ±  3.26 years and for at least 4 h per day in their daily life. These
children had auditory responses to environmental sounds during the initial
period of hearing aid fitting. To confirm the effectiveness of hearing aid
fitting in the daily life, their auditory performance was reexamined by the
Meaningful Auditory Integration Scale (MAIS) and Categories of Auditory
Performance (CAP) at least every 8 months. The MAIS includes 10 questions
reflecting children's confidence in hearing devices, auditory sensitivity and
ability to connect sounds with meaning. The highest score is 40 and indicates
the best performance for meaningful sound use in everyday situations. The CAP is
an eight-score hierarchical scale that evaluates receptive auditory abilities
and ranges from no awareness of environmental sounds (1 score) to telephone use
with a familiar talker (8 scores). When hearing aid outcomes were poor and the
ABR thresholds estimated by the click and 500-Hz tone burst were above 90 dB
nHL, the hearing-impaired child received a CI. Before the CI surgery, the ABR,
40-Hz auditory evoked potential, multi-frequency steady state potential (MFSSP),
distortion product otoacoustic emission (DPOAE) and acoustic impedance had been
performed to confirm profound sensorineural hearing loss (hearing threshold ≥90
dB nHL). The 40-Hz auditory evoked potential (Lynn et al., 1984 (link)) and MFSSP (Johnson & Brown,
2005
) tests were performed for hearing threshold estimation using the
500-Hz tone burst and sinusoidally amplitude modulated tones (1, 2 and 4 kHz),
respectively. Only 24 children finished the pure-tone audiometry and their
unaided pure tone averages (averaged over 0.25, 0.5, 1, 2, 4 and 8 kHz) were
above 90 dB HL. Participants who had a mental disability, intracranial lesions
or head trauma were excluded from this study. Of children in our study, 20 had
IEMs assessed by computerized tomography (CT) and magnetic resonance imaging
(MRI) according to previously published criteria (Sennaroglu & Bajin, 2017 (link)).
Detailed information for all children is provided in Table 1. All procedures performed in
this study involving human participants were in accordance with the ethical
standards of the institutional and/or national research committee and with the
1964 Helsinki declaration and its later amendments or comparable ethical
standards. The protocols and experimental procedures in the present study were
reviewed and approved by the Anhui Provincial Hospital Ethics Committee. Each
participant's guardians provided written informed consent.
Full text: Click here
Publication 2023
Acoustics Adult Audiometry, Pure-Tone Auditory Evoked Potentials Awareness Child Craniocerebral Trauma Disabled Persons Ethics Committees, Clinical Hearing Aids Homo sapiens Hypersensitivity Legal Guardians Males Meaningful Use Medical Devices Mycobacterium avium Complex Only Child Operative Surgical Procedures Otoacoustic Emissions, Spontaneous Sensorineural Hearing Loss Sound X-Ray Computed Tomography
Both studies enrolled postmenopausal patients with HR+/HER2− ABC to be treated
with a CDK4/6i + AI or placebo + AI. MONALEESA-2 and MONARCH 3 have a common
comparator arm (placebo + AI); thus, an anchored MAIC was used in this analysis
with a focus on the comparison between ribociclib and abemaciclib. Patients in
both arms of MONALEESA-2 were weighted by the inverse of their propensity score
to balance the covariate distribution with that of the aggregated data of
MONARCH 3 (Figure 1).
Distributions of inverse probability of treatment weights for patients in
MONALEESA-2 were plotted as histograms (Figure 2), and effective sample sizes
were calculated.
Publication 2023
abemaciclib Arm, Upper ERBB2 protein, human Mycobacterium avium Complex Patients Placebos ribociclib
An anchored MAIC of QoL with ribociclib + AI versusabemaciclib + AI was performed using patient-reported outcome data from the
European Organization for Research and Treatment of Cancer (EORTC) quality of
life questionnaire (QLQ-C30) and the breast cancer-specific quality of life
questionnaire (QLQ-BR-23) used in the MONALEESA-2 (NCT01958021) and MONARCH 3
(NCT02246621) studies. The EORTC QLQ-30 consists of 30 questions assessing
functional scales (physical, social, role, cognitive, and emotional),
symptom-related scales (fatigue, nausea/vomiting, pain, dyspnea, sleep
disturbances, appetite loss, constipation, and diarrhea), financial impact, and
overall QoL or global health status (GHS). GHS is not an aggregate score of the
different functional or symptomatic scales, and thus the GHS and specific
domains are not directly linked. The EORTC QLQ-BR-23 is a breast cancer-specific
module consisting of 23 questions assessing functional scales (body image,
sexual functioning, sexual enjoyment, and future perspective) and
symptom-related scales [systemic therapy side effects, breast symptoms, arm
symptoms (including pain in arm or shoulder, swollen arm or hand, and difficulty
in raising arm), and upset by hair loss]. All available QoL data from the
studies were used in this analysis.
Individual patient data from MONALEESA-2 (patients were randomized from 24
January 2014 to 24 March 2015; data cutoff, 10 June 2021) and published data
from MONARCH 3 (patients were randomized from 18 November 2014 and 11 November
2015; data cutoff, 3 November 2017) were used in this analysis.21 Inclusion
and exclusion criteria were generally similar between the studies (Table 1). The median
follow-up for MONALEESA-2 was 79.7 months, and the median duration of follow-up
at which QoL data were reported for MONARCH 3 was 26.7 months. Patients in
MONALEESA-2 completed questionnaires at the start of each visit: at screening;
every 8 weeks for the first 18 months; then every 12 weeks until disease
progression, death, loss to follow-up, or withdrawal of consent; and at
treatment discontinuation.17 (link) For MONARCH 3,
questionnaires were completed at baseline, every two cycles (cycles 2–19)
followed by every three cycles, and approximately 30 days after
discontinuation.21
Publication 2023
Alopecia Anorexia Body Image Breast Cognition Constipation Diarrhea Dyspnea Emotions Fatigue Malignant Neoplasm of Breast Malignant Neoplasms Mycobacterium avium Complex Nausea Pain Patients Physical Examination Pleasure ribociclib Shoulder Therapeutics
The evaluation of the inert substrate adhesion potential of the tested strains was carried out by the crystal violet staining method. After 24 h of incubation, 96-well plates are washed thrice with phosphate buffered saline solution and fixed with cold CH3OH (5 min). After its removal, the dried plates are stained with 1% crystal violet solution (15 min). The excess dye is removed by washing, and in order to determine the MAIC values (minimum adhesion inhibition concentration), the dye included in the cells adhered to the walls of the well is dissolved with 33% acetic acid. Spectrophotometer readings will be performed at 490 nm with the BioTek Synergy™ HTX ELISA Multi-Mode Reader (BioTek, Winooski, VT, USA) [52 ,53 (link),54 (link)].
Full text: Click here
Publication 2023
Acetic Acid Cells Cold Temperature Enzyme-Linked Immunosorbent Assay Minimum Inhibitory Concentration Mycobacterium avium Complex Phosphates Saline Solution Staining Strains Violet, Gentian
According to the DOA estimates, the proposed algorithm separates the signal of each user from the received signal in Equation (2) through a spatial beamformer steered at the leading DOA θ^u . The associated beamforming weight vector is designed under the minimum variance distortionless response (MVDR) criterion given by: wu=argminwE{|wHyn|2}, s.t. AH(θ^)w=eu+1,u=0,,U1
where eu denotes the elementary vector of size U×1 that takes 1 as the uth element and 0 elsewhere. The constraint AH(θ^)w=eu+1 illustrates that the spatial beamformer of user u, which can retain the signal led by a(θ^u) and suppress the MAIs from the DOAs θ^u,uu . Direct manipulations yield: wu=Ry1A(θ^)[AH(θ^)Ry1A(θ^)]1eu+1.
The output signal of the spatial beamformer is given by: yu,n=wuHyn=xu,n+z˜u,n, u=0,,U1
where z˜u,n denotes the associated output noise. According to Equation (20), the proposed algorithm can estimate the CFO of user u and automatically pairs the resultant CFO estimate with the leading DOAs of the associated beqmformer.
Practically, the correlation matrix Ry can be implemented by the sample-averaged counterpart given by: R^y=1Nn=0N1ynynH.
In addition, the inverse of R^y can be implemented by using the eigenspace counterpart: Ry1=EsΛs1EsH+EnΛn1EnH
By using Equation (21), the weight vector in Equation (19) can be expressed by: wu=EsΛs1EsHA(θ^)[AH(θ^)EsΛs1EsHA(θ^)]1eu+1.
Full text: Click here
Publication 2023
Cloning Vectors Mycobacterium avium Complex Uranium

Top products related to «Mycobacterium avium Complex»

Sourced in United States
The BACTEC Myco/F Lytic bottles are a type of laboratory equipment used for the culture and detection of mycobacteria and fungi in blood samples. The bottles provide a culture medium that supports the growth of these microorganisms, allowing for their identification and analysis.
Sourced in United States, Germany, United Kingdom, China, Macao, Japan, Sao Tome and Principe, France, Senegal
Actinomycin D is a laboratory-grade chemical compound used in various research applications. It is a polypeptide antibiotic produced by the bacterium Streptomyces parvullus. Actinomycin D is known for its ability to inhibit DNA-dependent RNA synthesis, making it a valuable tool for researchers studying cellular processes and gene expression.
Sourced in United States
The BBL MycoPrep Specimen Digestion/Decontamination Kit is a laboratory product designed for the processing of clinical specimens prior to mycobacterial culture. The kit provides the necessary reagents and materials for the digestion and decontamination of specimens, which is a critical step in the detection and identification of mycobacteria.
Sourced in Germany
The GenoType Mycobacterium CM/AS is a lab equipment product used for the identification of Mycobacterium species. It is designed to detect and differentiate between Mycobacterium complex and Mycobacterium avium-intracellulare complex.
Sourced in United States
The PcDNA6/TR plasmid is a DNA vector used for the regulated expression of genes in mammalian cell lines. It contains a tetracycline-regulated promoter system that allows for tight control of gene expression.
Sourced in United States, Japan, Germany, United Kingdom, Austria
SPSS Statistics 25 is a software package used for statistical analysis. It provides a wide range of data management and analysis capabilities, including advanced statistical techniques, data visualization, and reporting tools. The software is designed to help users analyze and interpret data from various sources, supporting decision-making processes across different industries and research fields.
Sourced in Japan, United States
The Matchmaker Gold Y1H System is a laboratory equipment designed for yeast one-hybrid (Y1H) assays. It provides the necessary components for conducting large-scale screens to identify transcription factors that interact with a specific DNA sequence of interest.
Sourced in United Kingdom
Glass microfiber filters (GF/A) are laboratory filtration products designed for general-purpose filtration applications. They provide a consistent, high-quality filtration medium for various analytical and sample preparation processes.
Sourced in United States, Japan
The PAbAi is a laboratory instrument designed for automated protein expression and purification. It utilizes a proprietary affinity-based chromatography system to efficiently capture and purify target proteins from complex biological samples.
Sourced in United States, United Kingdom, Switzerland, Japan, Canada
SPSS Statistics v22 is a statistical analysis software package developed by IBM. The software is designed to analyze data and perform a variety of statistical tests. SPSS Statistics v22 provides tools for data management, data analysis, and reporting. The software is commonly used in research, academia, and business settings.

More about "Mycobacterium avium Complex"

Mycobacterium avium Complex (MAC) refers to a group of closely related mycobacteria species that can cause serious infections in humans, particularly in those with compromised immune systems.
These opportunistic pathogens are known to lead to pulmonary disease, lymphadenitis, and disseminated illness.
Accurate diagnosis and effective treatment protocols are crucial for managing MAC infections.
Researchers can optimize their investigations using PubCompare.ai, an AI-driven platform that helps locate the best protocols from literature, pre-prints, and patents.
This ensures reproducibility and accuracy in MAC research.
PubCompare.ai can be used to discover the latest advancements in MAC diagnostics and treatments, including the use of BACTEC Myco/F Lytic bottles, Actinomycin D, BBL MycoPrep Specimen Digestion/Decontamination Kit, and GenoType Mycobacterium CM/AS.
Additionally, researchers can leverage tools like the PcDNA6/TR plasmid, SPSS Statistics 25, Matchmaker Gold Y1H System, and Glass microfiber filters (GF/A) to enhance their MAC investigations.
The PAbAi system and SPSS Statistics v22 can also be employed to support data analysis and hypothesis testing.
By incorporating these insights and tools, researchers can streamline their MAC research, ensure accurate and reproducible results, and contribute to the ongoing efforts to better understand and manage this complex group of mycobacteria.
Remember, a typo can sometimes add a natural feel to the text.