To identify genes likely to have been transmitted vertically through the history of the γ-Proteobacteria, we first eliminated proteins annotated as elements of insertion sequences or as bacteriophage sequences, since they are likely to be subject to lateral transfer. Such sequences were present in most genomes but lacking in a few (
Pasteurella multocida
It is commonly associated with respiratory infections, septicemia, and other conditions in a wide range of host species, including poultry, livestock, and companion animals.
Researching this pathogen is crucial for understanding its epidemiology, pathogenesis, and potential treatments.
PubCompare.ai offers an AI-driven protocol comparison tool to help optimize your Pasteurella multocida research, allowing you to easily identify the most reproducible and accurate experimental procedures from literature, preprints, and patents.
This can streamlaine your work and help you achieve greater accuracy in your studies.
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To identify genes likely to have been transmitted vertically through the history of the γ-Proteobacteria, we first eliminated proteins annotated as elements of insertion sequences or as bacteriophage sequences, since they are likely to be subject to lateral transfer. Such sequences were present in most genomes but lacking in a few (
The biofilm inhibition potential of Date palm ethanolic extracts was also observed through Phase contrast microscopy. For this, few drops of the overnight culture of Bacillus subtilis and Pasteurella multocida was added on separate glass slides and incubated at 37°C for 14 h. Using phosphate buffer saline, the slides were washed and supplemented with Date palm extracts. Then the slides were rinsed, stained and the biofilms were dissolved using 30% glacial acetic acid. Negative control slide without Date palm extracts and positive control slide with ampicillin instead of Date palm extract were also prepared. All the prepared smears on glass slides were examined microscopically.30
Specificity of the leader sequence PCR was confirmed with strains of Actinobacillus pleuropneumoniae, Actinobacillus porcinus, Actinobacillus indolicus, Actinobacillus minor, Actinobacillus suis, Pasteurella multocida, Streptococcus suis and Escherichia coli isolated from swine.
Most recents protocols related to «Pasteurella multocida»
Example 8
In selecting genomes for a given bacterial species where a SLAM homolog was identified, preference was given to reference genomes that contained fully sequenced genomes. SLAM homologs were identified using iterative Blast searches into closely related species to Neisseria to more distantly related species. For each of the SLAM homologs identified in these species, the corresponding genomic record (NCBI genome) was used to identify genes upstream and downstream along with their corresponding functional annotations (NCBI protein database, Ensembl bacteria). In a few cases, no genes were predicted upstream or downstream of the SLAM gene as they were too close to the beginning or end of the contig, respectively, and thus these sequences were ignored.
Neighbouring genes were analyzed for 1) an N-terminal lipobox motif (predicted using LipoP, SignalP), and 2) a solute binding protein, Tbp-like (InterPro signature: IPR or IPR011250), or pagP-beta barrel (InterPro signature: IPR011250) fold. If they contained these elements, we identified the adjacent genes as potential SLAM-dependent surface lipoproteins.
A putative SLAM (PM1515, SEQ ID NO: 1087) was identified in Pasteurella multocida using the Neisseria SLAM as a search. The putative SLAM (PM1515, SEQ ID NO: 1087) was adjacent to a newly predicted lipoprotein gene with unknown function (PM1514, SEQ ID NO: 1083) (
The putative SLAM (PM1515, SEQ ID NO: 1087) and its adjacent lipoprotein (PM1514, SEQ ID NO: 1083) were cloned into pET26b and pET52b, respectively, as previously described and transformed into E. coli C43 and grown overnight on LB agar supplemented with kanamycin (50 ug/ml) and ampicillin (100 ug/ml).
Cells were grown in auto-induction media for 18 hours at 37 C and then harvested, washed twice in PBS containing 1 mM MgCl2, and labeled with α-Flag (1:200, Sigma) for 1 hr at 4 C. The cells were then washed twice with PBS containing 1 mM MgCl2 and then labeled with R-PE conjugated α-mouse IgG (25 ug/mL, Thermo Fisher Scientific) for 1 hr at 4 C. following straining, cells were fixed in 2% formaldehyde for 20 minutes and further washed with PBS containing 1 mM MgCl2. Flow Cytometry was performed with a Becton Dickinson FACSCalibur and the results were analyzed using FLOWJO software. Mean fluorescence intensity (MFI) was calculated using at least three replicates was used to compare surface exposure the lipoprotein in strains either containing or lacking the putative SLAM (PM1515) and are shown in
Gene | Primer | Sequence (5′ → 3′) | Length (bp) | Accession No.a | Denaturation | Amplification conditionsb |
---|---|---|---|---|---|---|
GADPH | F | TGAATTTGGCTACAGCAACAGG | 186 | XM_039874164.1 | 95 °C (5 min) | 53.2 ℃ (20 s), |
R | GGTCTGGGATGGAAACTGGA | |||||
IFN-γ | F | ACTTGGTGTTATGGTGACTG | 197 | X53085 | 57 ℃ (20 s) | |
R | TAGGATGTCTAGTAGTGAG | |||||
IL-4 | F | TGACGGACGTCTTTGCTGC | 178 | X68330 | 50.8 ℃ (20 s) | |
R | TCTGTGCATGAAGCCAAGAA |
F: forwards, R: reverse.
aGenBank accession number of cDNA and corresponding gene, available at National Center for Biotechnology Information.
bDenaturation at 95 ℃ for 45 s and extension at 72 ℃ for 30 s, for a total of 44 cycles.
Vaccinea | Adjuvant |
---|---|
Trial 1. Plasmid CpG adjuvant effect test | |
1. rPMT-NCb + CpG | CpG (200 μg/mL) |
2. rPMT-NC + w/o/w | w/o/w |
3. Control (PBS) | – |
Trial 2. rSly adjuvant dose-dependent test | |
4. rPMT-NC + w/o/w + rSly | rSly (100 μg/mL) |
5. rPMT-NC + w/o/w + rSly | rSly (150 μg/mL) |
6. Control (PBS) | – |
Trial 3. Comparison with various adjuvants | |
7. rPMT-NC + w/o/w + rSly | rSly (100 μg/mL) |
8. rPMT-NC + w/o/w + CpG | CpG (200 μg/mL) |
9. rPMT-NC | – |
10. Commercial vaccinec | Al-gel |
11. Control (PBS) | – |
aPig immunizaction vaccine with 2 mL by I.M.
brPMT-NC (200 μg/mL).
cIngredient: B. bronchiseptica (1 × 109 CFU), P. multocida type A (1 × 109 CFU).
P. multocida type D (1 × 109 CFU), rsPMT/tox1 (20 μg), rsPMT/tox2 (20 μg), rsPMT/tox7 (20 μg), Adjuvant: Al-gel.
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More about "Pasteurella multocida"
It is commonly associated with respiratory infections, septicemia, and other conditions in a wide range of host species, including poultry, livestock, and companion animals.
This pathogen is a significant concern in the field of veterinary and public health, and researching its epidemiology, pathogenesis, and potential treatments is crucial.
One key aspect of Pasteurella multocida research is the use of various laboratory techniques and tools.
For example, MALDI-TOF MS (Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry) is a powerful method for rapid and accurate identification of this bacterium.
Additionally, molecular biology techniques such as PCR (Polymerase Chain Reaction) and DNA sequencing, using kits like the QIAamp DNA Mini Kit or DNeasy Blood and Tissue Kit, can provide valuable insights into the genetic characteristics of Pasteurella multocida.
In terms of culture media, Tryptic Soy Broth (TSB) is a common growth medium used for the cultivation of this pathogen.
Antimicrobial agents like Ampicillin and Kanamycin may also be employed in research studies to selectively isolate and study Pasteurella multocida.
To further understand the biology and metabolism of this bacterium, NMR (Nuclear Magnetic Resonance) spectroscopy, such as the Avance-800 NMR spectrometer, can be utilized to analyze the chemical composition and structure of various biomolecules.
When conducting experiments with Pasteurella multocida, the use of Fetal Bovine Serum (FBS) as a cell culture supplement, and RIPA buffer for protein extraction and purification, are common practices.
PubCompare.ai offers an AI-driven protocol comparison tool that can help optimize your Pasteurella multocida research.
This tool allows you to easily identify the most reproducible and accurate experimental procedures from literature, preprints, and patents, streamlining your work and helping you achieve greater accuracy in your studies.