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Ureaplasma

Ureaplasma is a genus of small, wall-less bacteria that are commensally found in the urogenital tract of humans and animals.
These microorganisms are associated with a range of clinical conditions, including urethritis, prostatitis, infertility, and neonatal pneumonia.
Accurate identification and characterization of Ureaplasma species is crucial for understanding their role in disease and developing effective treatment strategies.
PubCompare.ai's AI-driven platform can help researchers streamlien their Ureaplasma studies by locating the most reliable protocols from literature, preprints, and patents, while providing insightful comparisons to identify the best approaches.
This tool can enhance the reproducibility and accuracy of Ureaplasma research, optimizing your workflow and empowering your discoveries.

Most cited protocols related to «Ureaplasma»

CoNet offers a series of features that distinguish it from other network inference tools, such as its support for object groups. This feature allows a user to assign objects to different groups (
e.g. metabolites and enzymes). Relationships can then be inferred only between different object types (resulting in a bipartite network) or only within the same object type. CoNet's treatment of two input matrices is built upon this feature.
Furthermore, CoNet can handle row metadata, which allows for instance to infer links between objects at different hierarchical levels (
e.g. between order Lactobacillales and genus Ureaplasma) while preventing links between different levels of the same hierarchy (e.g. Lactobacillales and Lactobacillaceae). CoNet can also read in sample metadata such as temperature or oxygen concentration. When sample metadata are provided, associations among metadata items and between taxa and metadata items are inferred in addition to the taxon associations. Metadata are then represented as additional nodes in the resulting network. In addition, CoNet recognizes abundance tables generated from biom files (
McDonald
et al., 2012
) and, in its Cytoscape 3.× version, reads biom files in HDF5 format directly, using the BiomIO Java library (
Ladau ). Taxonomic lineages in biom files or biom-derived tables are automatically parsed and displayed as node attributes of the resulting network. For instance, the lineage "k__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s_Lactobacillus acidophilus" of an operating taxonomic unit with identifier 12 would create a kingdom, phylum, class, order, family, genus and species attribute in the node property table for node OTU-12, filled with the corresponding values from the lineage. CoNet also computes a node's total edge number as well as the number of positive and negative edges, the total row sum and the number of samples in which the object was observed (e.g. was different from zero or a missing value).
To ease the selection of suitable preprocessing steps, CoNet can display input matrix properties and recommendations based on them. Importantly, CoNet can also handle missing values, by omitting sample pairs with missing values from the association strength calculation. Finally, CoNet supports a few input and output network formats absent in Cytoscape, including adjacency matrices (import), dot (the format of GraphViz (
http://www.graphviz.org/)) and VisML (VisANT's format (
Hu
et al., 2013
)) (both for export).
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Publication 2016
Bacteria cDNA Library Enzymes Firmicutes Lacticaseibacillus casei Lactobacillaceae Lactobacillales Lactobacillus Lactobacillus acidophilus Oxygen Ureaplasma
A host-adapted strain of U. parvum, designated strain 257-48 was used for the entire study [13 (link)]. Fifty mls of U. parvum in logarithmic growth phase was aliquoted into 1 ml volumes and stored at -80°C. This stock was used for all experiments.
For infection studies, one ml of the working stock was grown in 45 ml of 10B broth for 12 to 16 hours at 37°C. The Ureaplasma culture was pelleted by centrifugation at 10,000 × g, at 4°C, for 50 minutes. Due to the delicate nature of Ureaplasma, the pellet was resuspended in 15 to 20 ml of fresh 10B broth instead of saline, to give a final concentration of 109 CFU per ml then serially diluted to produce various inocula that contained 107, 105, 103, and 101 CFU per ml. The CFU of all inocula (including all serial dilutions) were confirmed by culture on A8 agar. For each infection experiment, at least two animals were included in each U. parvum dose group and experiments were replicated a minimum of 5 times.
Inocula and animal tissues were serially diluted 10-fold in 10B broth to 10-10 and 10-5, respectively. For CFU determination, 20 μl from each sample and its corresponding dilutions were plated on A8 agar. Agar plates were incubated at 37°C in 5% CO2; broth cultures were incubated at 37°C in ambient air. Agar cultures were incubated for at least 5 days before colonies were counted to determine CFU.
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Publication 2009
Agar Animals Centrifugation Infection Saline Solution Strains Technique, Dilution Tissues Ureaplasma
Paired cervical fluid and amniotic fluid samples were collected at the time of admission from all women included in this study, prior to the administration of antibiotics, tocolytics, and/or corticosteroids. Each cervical fluid sample was obtained by placing a Dacron polyester swab in the cervical canal for 20 s to achieve saturation. Once collected, the polyester swab was inserted into a polypropylene tube containing 1.5 mL of phosphate-buffered saline; the tube was then shaken for 20 min. Upon removal of the polyester swab, the tube was centrifuged at 300×g for 15 min at room temperature. The supernatant was divided into aliquots and stored at − 80 °C until further analysis.
Ultrasonography-guided transabdominal amniocentesis was performed after cervical fluid sampling. Approximately 2–3 mL of amniotic fluid was aspirated, and the amniotic fluid was immediately divided among polypropylene tubes. The samples of amniotic fluid were used for (i) the assessment of amniotic fluid interleukin (IL)-6; (ii) polymerase chain reaction (PCR) analysis of Ureaplasma species, Mycoplasma hominis, and Chlamydia trachomatis; (iii) sequencing of the 16S rRNA gene; and (iv) aerobic and anaerobic cultivation.
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Publication 2021
Adrenal Cortex Hormones Amniocentesis Amniotic Fluid Antibiotics, Antitubercular Bacteria, Aerobic Cervix Uteri Chlamydia trachomatis Dacron Genes Interleukin-6 Mycoplasma hominis Neck Phosphates Polyesters Polymerase Chain Reaction Polypropylenes RNA, Ribosomal, 16S Saline Solution Tocolytic Agents Ultrasonography Ureaplasma Woman
DNA was isolated from amniotic fluid using the QIAamp DNA Mini Kit (Qiagen, Hilden, Germany), according to the manufacturer’s instructions. Real-time PCR was conducted on a Rotor-Gene 6000 instrument (Qiagen) using the commercial AmpliSens C. trachomatis/Ureaplasma/M. hominis-FRT kit (Federal State Institution of Science, Central Research Institute of Epidemiology, Moscow, Russia) to detect the DNA from Ureaplasma species, M. hominis, and C. trachomatis in the same PCR tube (multiplex format). We included a PCR run for beta-actin, a housekeeping gene that served as the control, to examine the presence of polymerase chain reaction inhibitors.
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Publication 2021
Amniotic Fluid beta-Actin Chlamydia trachomatis Genes Genes, Housekeeping inhibitors Polymerase Chain Reaction Real-Time Polymerase Chain Reaction Ureaplasma
Analysis of putative resistant isolates was conducted in accordance with CLSI M43A(21) using a previously published methodology for breakpoint analysis for Ureaplasma spp. isolates [22 (link)]. The method was modified to include additional antibiotics, alongside utilising MHSM for the breakpoint screening of M. hominis isolates. Isolates were screened against the CLSI guideline concentrations of antibiotic. Isolates were only screened against antibiotics if they had shown supposed resistance to that antibiotic on the MYCO WELL D-ONE assay. All antibiotics were purchased from Sigma-Aldrich (Dorset, UK) and supplied as or reconstituted to 1 mg/mL stock solutions, prior to further dilution in the appropriate media (USM/MHSM) to achieve CLSI-compliant concentrations for AST.
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Publication 2020
Antibiotic Resistance, Microbial Antibiotics Antibiotics, Antitubercular Biological Assay Technique, Dilution Ureaplasma

Most recents protocols related to «Ureaplasma»

According to the manufacturer’s instructions, mycoplasma detection in the working virus stocks was performed using the Takara PCR Mycoplasma detection set (catalog number 6601, Takara bio). The kit can detect at least 11 species of Mycoplasma (i.e., M. fermentans, M. hyorhinis, M. arginini, M. orale, M. salivarium, M. hominis, M. pulmonis, M. arthritidis, M. neurolyticum, M. hyopneumoniae, M. capricolum) and species of Ureaplasma (i.e., U. urealyticum) belonging Mycoplasmataceae.
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Publication 2023
Mycoplasma Mycoplasmataceae Ureaplasma Virus
The purpose of these studies was to establish human-simulated regimens of cefepime and taniborbactam in the murine pneumonia model equivalent to clinical doses of 2 and 0.5 g, respectively, administered every 8 h as 4 h infusions based on the unbound (free) plasma exposures. Following the selection and the confirmation of the cefepime and taniborbactam human-simulated regimens, additional studies were conducted to quantify the plasma and bronchopulmonary exposures achieved following the administration of the taniborbactam dosages utilized in the dose-ranging studies in combination with the cefepime human-simulated regimen.
Cefepime pharmacokinetic data in healthy adult volunteers collected in Phase I studies upon taniborbactam co-administration8 (link) and cefepime and taniborbactam pharmacokinetic parameters in the murine model were utilized for simulation. Cefepime protein-binding percentages utilized in the simulations were 20% and 0% in humans and mice, respectively,9 (link) while taniborbactam protein-binding percentages were 0% and 19.4% in humans10 and mice,11 (link) respectively.
Infected mice (6–10 groups of six mice each) received the estimated human-simulated regimen of cefepime as monotherapy or in combination with that of taniborbactam or fractions of the established taniborbactam human-simulated regimen: 1.56% or 12.5% of the taniborbactam human-simulated regimen doses (equivalent to 7.8 or 62.5 mg every 8 h as 4 h infusion, respectively).
At 6–10 different timepoints, groups of six mice were euthanized by CO2 asphyxiation followed by blood collection via intracardiac puncture and cervical dislocation. Following blood collection, but prior to cervical dislocation, bronchoalveolar lavage (BAL) fluid was collected from the mice at the same timepoints using methods previously described.12 Formic acid in water (2% v/v) was added to BAL samples (equal parts) prior to freezing. All sample tubes were stored at −80°C until drug and urea concentration determination. Cefepime, taniborbactam and urea concentrations in plasma and BAL fluid were assayed by either Keystone Bioanalytical, Inc. (North Wales, PA, USA) or by Venatorx Pharmaceuticals, Inc. using qualified LC-MS/MS methods.
Cefepime and taniborbactam concentrations in the epithelial lining fluid (ELF) were estimated by correcting the drug concentration in BAL fluid for the dilution with NS during lavage using the following formula13 (link):
CompoundELF = CompoundBAL × (Ureaplasma/UreaBAL), where CompoundBAL is the measured concentration of either cefepime or taniborbactam in the BAL fluid sample and Ureaplasma and UreaBAL are the concentrations of urea in paired plasma and BAL fluid samples from each mouse, respectively.
Statistical outliers for each respective analyte were removed by the IQR method. A pharmacokinetic model was fitted to the plasma and ELF concentrations of each of cefepime and taniborbactam and the best-fit estimate parameters were determined by the non-linear least-squares techniques (WinNonlin, Version 8.3, Pharsight Corp., Mountain View, CA, USA). Compartment model selection was based on visual inspection of the fit and comparison of model diagnostics.
These parameters were utilized to estimate the plasma and ELF exposures and the ELF penetration ratios as the ratio of the ELF AUC0–24 to unbound (free) plasma AUC0–24.
Publication 2023
Adult Asphyxia BLOOD Bronchoalveolar Lavage Fluid Cefepime Diagnosis Dimercaprol Drug Kinetics formic acid Healthy Volunteers Homo sapiens Joint Dislocations Mice, Laboratory Mus Neck Pharmaceutical Preparations Plasma Pneumonia Punctures Tandem Mass Spectrometry taniborbactam Technique, Dilution Treatment Protocols Urea Ureaplasma
Taniborbactam and cefepime concentrations were assayed using validated LC-MS/MS methods. The lower limit of quantitation (LLOQ) was 100 ng/mL for both taniborbactam and cefepime in plasma, and 5.00 ng/mL and 3.00 ng/mL for taniborbactam and cefepime, respectively, in ELF. Assay accuracy and precision were demonstrated for all assays in the validations.19 (link) Urea concentrations in plasma and BAL fluid were determined by Keystone Bioanalytical, Inc. (North Wales, PA, USA) using validated LC-MS/MS methods.
The ELF volume and drug concentration were calculated by the urea dilution method and described below:20 (link) VELF=VBAL×(UreaBAL//UreaPLASMA), where VELF is the volume of ELF sampled by BAL, VBAL is the volume of BAL fluid recovered from aspiration, UreaBAL is the concentration of urea in the BAL fluid and UreaPLASMA is the concentration of urea in the plasma. The concentration of the antibiotic in ELF (ABXELF) was determined by the following relationship: ABXELF=ABXBAL×(VBAL//VELF), where ABXBAL is the concentration of the antibiotic determined in the BAL fluid sample.
The number of AM within the BAL fluid was determined from the mean proportion of histiocytes and monocytes present in two manual cell counts, and the total volume of these cells in the cell pellet was calculated by using a mean AM cell volume of 2.42 µL/106 cells.21 (link) To determine the total amount (Amt) of drug in the cell pellet, the following equation was used: AmtPELLET=ABXPELLET×VPELLET, where ABXPELLET is the concentration of drug within the reconstituted cell pellet and VPELLET is the volume used to reconstitute the cell pellet. The amount of drug in the AM could then be calculated using the following equation: DrugAM=AmtPELLET//(meanAMinBAL×VAM), where VAM is the mean cell volume of an AM (2.42 µL/106 cells). AM drug concentrations were determined for taniborbactam only.
Taniborbactam and cefepime plasma pharmacokinetics were described by non-compartmental methods using Phoenix WinNonlin (Certara, Princeton, NJ, USA). Estimated pharmacokinetic parameters included the maximum concentration (Cmax), AUC over the dosing interval (AUC0–8) calculated using the linear/log trapezoidal rule, the free drug exposure (fAUC0–8) calculated by correcting concentrations for protein binding, the volume of distribution at steady state (Vss), and CL. PK parameters in ELF (Cmax, Tmax and AUC0–8 by linear/log trapezoidal rule) were calculated manually based on mean ELF concentrations. Drug penetration was estimated by the ratio of the AUC0–8 for ELF or AM to the mean fAUC0–8 in plasma.
Publication 2023
Antibiotics Biological Assay Cefepime Cells Drug Kinetics Erythrocyte Volume, Mean Cell Histiocytes Monocytes Pharmaceutical Preparations Plasma Tandem Mass Spectrometry taniborbactam Technique, Dilution Trapezoid Bones Urea Ureaplasma
The strain CECT 30632 was isolated in the frame of a previous study [13 (link)] from the vaginal exudate of a normoweight woman who met the following criteria: (a) no history of genitourinary tract infections and a low record of antibiotic use; (b) two previous term pregnancies without any complication; (c) abundant presence of lactobacilli in the vaginal sample (>6 log10 colony-forming units (cfu)/swab) after culturing on MRS plates; (d) absence of detection of chlamydias, trichomonas, Gardnella vaginalis, Ureaplasma spp. S. agalactiae, Mycoplasma spp., and Candida spp. (or any other yeast) in the vaginal samples; and (e) negative (blood screening) to human immunodeficiency viruses (HIV), cytomegalovirus, human papillomavirus (HPV), gonorrhea, and syphilis. In addition, strain-related criteria used to select strain CECT 30632 were its capacity to grow (≥1 × 108 cfu/mL) in routine broth medium (MRS broth) after incubation (16 h at 37 °C).
The strain was identified as Ligilactobacillus salivarius using Matrix Assisted Laser Desorption Ionization-Time of Flight (MALDI-TOF) mass spectrometry (Bruker, Germany). The European Food Safety Authority (EFSA) includes this species among those with the QPS (qualified presumption of safety).
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Publication 2023
Antibiotics Blood Candida Chlamydia Cytomegalovirus Europeans Exudate Gonorrhea HIV Human Papillomavirus Lactobacillus Ligilactobacillus salivarius Mycoplasma Reading Frames Safety Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization Strains Syphilis Trichomonas Ureaplasma Urinary Tract Infection Vagina Woman Yeast, Dried
During the putative window of implantation (days 19–24), women underwent endometrial biopsies using a TAO Brush IUMC Endometrial Sampler (Cook Medical) to avoid vaginal and cervical contamination. The timing of the biopsy was based on the last menstrual period by measuring the follicle size with transvaginal ultrasound and was then confirmed by histologic evaluation.
Serum progesterone and beta subunit of human chorionic gonadotropin (β-hCG) levels were assessed on the day of the biopsy.
Cultural, histological, and functional examinations were carried out in all collected samples.
Endometrial samples were examined for the following infectious agents: Chlamydia trachomatis, Ureaplasma spp., Mycoplasma spp., Neisseria gonorrhea, Yeasts; human papillomavirus (HPV), Gram-negative and Gram-positive bacteria.
Women with evidence of chronic endometritis (CE) at hysteroscopy were not included in the study. The collected samples were split into two parts: one was put in 10% buffered formalin for paraffin embedding while the other one was preserved at −80 °C. Histologic dating of the endometrium was achieved according to standard criteria by a single investigator who was blinded to clinical outcomes. Histologic diagnosis of CE was based on the criteria described above [9 (link),10 (link)].
We analyzed the following characteristics: superficial stroma edema, increased stroma density, and stromal inflammatory infiltrate dominated by lymphocytes and plasma cells.
In parallel, women underwent vaginal sample collection using a Copan swab (n. 490CE.AM). Similarly, the collected samples were analyzed for the following infectious agents: Chlamydia trachomatis, Ureaplasma spp., Mycoplasma spp., Neisseria gonorrhea, Yeasts, human papillomavirus (HPV), Gram-negative and Gram-positive bacteria.
In case of endometrial or vaginal infection, specific antibiotic therapy was prescribed, and patients were excluded from the study.
In the control group, no pathogens were identified in the vaginal and in endometrial samples.
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Publication 2023
Antibiotics Biopsy Chlamydia trachomatis Chorionic Gonadotropin, beta Subunit, Human Diagnosis Edema Endometritis Formalin Gram-Positive Bacteria Human Papillomavirus Hysteroscopy Infection Inflammation Lymphocyte Menstruation Mycoplasma Neck Neisseria gonorrhoeae Ovarian Follicle Ovum Implantation pathogenesis Patients Physical Examination Plasma Cells Progesterone Serum Specimen Collection Therapeutics Troleandomycin Ultrasonography Ureaplasma Vagina Woman Yeasts

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Urea is a chemical compound with the formula CO(NH2)2. It is a colorless, odorless, and crystalline solid that is highly soluble in water. Urea's core function is to serve as a source of nitrogen and a key component in many biochemical processes.
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More about "Ureaplasma"

Ureaplasma is a genus of small, wall-less bacteria that are commonly found in the urogenital tract of humans and animals.
These microorganisms are associated with a range of clinical conditions, including urethritis, prostatitis, infertility, and neonatal pneumonia.
Accurate identification and characterization of Ureaplasma species is crucial for understanding their role in disease and developing effective treatment strategies.
The QIAamp DNA Mini Kit can be used to extract high-quality genomic DNA from Ureaplasma samples, while the Rotor-Gene 6000 real-time PCR system can be employed for sensitive and specific detection of Ureaplasma species.
The Mycoplasma IST 2 kit provides a reliable method for identifying and differentiating Ureaplasma species.
Nuclease-free water is an essential component for preparing Ureaplasma culture media, such as Urea broth, which supports the growth of these fastidious organisms.
The TaqMan Fast Advanced Master Mix is a popular choice for qPCR-based quantification of Ureaplasma loads.
Phenol red can be used as a pH indicator in Ureaplasma culture media, while horse serum may be added to provide essential nutrients.
The ToxinSensor Endotoxin Detection System can be utilized to assess the endotoxin levels in Ureaplasma preparations, ensuring the safety of research and clinical samples.
Researchers can streamline their Ureaplasma studies by leveraging the AI-driven platform of PubCompare.ai.
This tool helps identify the most reliable protocols from literature, preprints, and patents, while providing insightful comparisons to optimize your research workflow and enhance the reproducibility and accuracy of your Ureaplasma investigations.