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Ixodes scapularis

Ixodes scapularis, also known as the deer tick or black-legged tick, is a species of tick that is a major vector for several infectious diseases, including Lyme disease, anaplasmosis, and babesiosis.
This tick is commonly found in the eastern and central United States, and its range has been expanding in recent years.
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Most cited protocols related to «Ixodes scapularis»

Six independent literature searches were conducted using Scopus and PubMed databases with the following key words “Ixodes scapularis,” “Ixodes pacificus,” and “tick” to identify relevant articles and abstracts published from 1996 through 25 August 2015. We also conducted a search to ensure that papers using the junior synonym “Ixodes dammini” rather than Ixodes scapularis were included. All reports that explicitly presented county-specific tick data were included in our database. In addition, we visited individual state health department Web sites to identify county-level tick surveillance data, and contacted public health officials, acarologists, and Lyme disease investigators throughout the United States to assess county-level tick collection data.
Publication 2016
Ixodes Ixodes scapularis Lyme Disease Ticks
We investigated the design of potential immunogenic peptides of the gSG6 protein using bio-informatic tools. The strategy was i) to identify potential immunogenic epitopes predicted by algorithms; and ii) to research the specificity of An. gambiae gSG6 peptide sequence compared to the genome/ Expressed Sequence Tag (EST) libraries of other organisms.
This analysis was based on the amino acid sequence of mature An. gambiae gSG6 (“UniProtKB/TrEMBL:Q9BIH5” and “gi:13537666”, [23] (link)).
The identification of putative linear B-cell epitopes of An. gambiae gSG6 was performed by computerized predictions of antigenicity based on physico-chemical properties of the amino-acid sequences with the BcePred database [24] and with the FIMM database [25] (link). We also identified the MHC class 2 binding regions using the ProPred-2 online service [26] (link).
Sequence alignments were done with the Tblastn program in Vectorbase database [27] (link) which enabled comparing a sequence of gSG6 peptides with known genomes or EST libraries of Aedes aegypti, Ixodes scapularis, Culex pipiens, Pediculus humanus, Glossina morsitans, Rhodnius prolixus, Lutzomia longipalpis and Phlebotomus papatasi. Concomitantly, we investigated sequence alignments with the Blast program to compare the gSG6 peptides sequence with all non-redundant GenBank CDS database [28] (link).
Peptides were synthesized and purified (>80%) with Genosys (Sigma-Genosys, Cambridge, UK) with an added N-terminal biotin. All peptides were shipped lyophilized and they were resuspended in 0.22 µm filtered milliQ water and stored in aliquots at −80°C.
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Publication 2008
Aedes Amino Acid Sequence Antigens Biotin chemical properties Culex Epitopes Epitopes, B-Lymphocyte Expressed Sequence Tags Genes, MHC Class II Genome Genomic Library Glossina Ixodes scapularis Lice, Body Peptides Phlebotomus Proteins Rhodnius Sequence Alignment

Auanema rhodensis n. sp. (strain SB347) was originally isolated from blood-engorged deer ticks (Ixodes scapularis) that were used as bait for nematodes. The ticks were placed in the upper layer of the soil in Kingston (University of Rhode Island), R.I., United States, in September 2001 by E. Zhioua (W. Sudhaus, pers. comm.). Subsequently, a laboratory culture of A. rhodensis SB347 was established by W. Sudhaus14 (link). A. freiburgensis n. sp. (strain SB372) was isolated from a dung pile in Freiburg, Germany, in August 2003 by W. Sudhaus. Both strains have been kept in the laboratory on NGM plates seeded with Escherichia coli OP50, as is standard for C. elegans26 and preserved cryogenically (e.g. at the NYU Rhabditid Collection).
Both species produce males and females, and hermaphrodites after passage through the dauer stage19 (link). The genders were collected separately as follows. In A. rhodensis, most female embryos are produced by their mother within the first 15 hours of adulthood19 (link), 22 (link). To obtain females, dauer juveniles were placed individually on a small agar plate seeded with OP50 and cultured at 20 °C until adulthood. After these hermaphrodites oviposited 25 eggs or fewer, they were removed. The F1 generation developed into adult females. To obtain hermaphrodites, dauer juveniles were transferred from old cultures onto seeded NGM plates and collected with the Baermann funnel technique after they reached adulthood. Males were hand-picked from 3- to 7-day-old cultures. For A. freiburgensis, females were obtained by letting hermaphrodites self-fertilize on individual plates. Most self-progeny under these conditions are either female or male. Hermaphrodites were obtained by isolating dauer juveniles from crowded plates and letting them develop into adults.
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Publication 2017
3-(4-dimethylaminophenyl)-N-hydroxy-2-propenamide Adult Agar Blood Eggs Embryo Escherichia coli Feces Females Hemorrhoids Hermaphroditism Ixodes scapularis Males Mothers Nematoda Strains Ticks Woman
For the MIL data set, nine transcriptomes from Brewer and Bond (2013) (link) were downloaded from the SRA (accessions: SRX326775–SRX326777, SRX326779–SRX326784). Paired-end 50 bp reads were filtered using the read cleaning procedure from Yang and Smith (2013) (link): Reads with average quality scores lower than 32 were removed; bases at the 3′-end with quality scores lower than 20 were trimmed, and only reads longer than 30 bp after trimming were kept. Both reads in a read pair were removed if one of the reads did not pass the quality filter. Adapter contamination was screened against the UniVec database (http://www.ncbi.nlm.nih.gov/tools/vecscreen/univec/, last accessed November 20, 2013) and, the Illumina TruSeq adapters and all vector containing read pairs were removed. This differed from the original publication in that we removed the entire read pair when an adapter was detected in either of the reads, instead of cutting off the first nine bases from all reads. Given the typical insertion size for Illumina RNA-seq libraries (∼130–200 bp), the presence of an adapter dimer (∼120 bp) would often render a read pair to be useless. All nine transcriptomes were assembled using Trinity version 20131110 with default settings (Grabherr et al. 2011 (link)), except that min_kmer_cov was set to 2 instead of the default value of 1, consistent with Brewer and Bond (2013) (link). Archispirostreptus gigas EST sequences were downloaded from GenBank (4,008 in total, accessions FN194820–FN198827; Meusemann et al. 2010 (link)). All transcripts were translated using TransDecoder version 20131137 assisted by pfam domain information (Haas et al. 2013 (link)). Following Brewer and Bond (2013) (link), additional proteome data of Ixodes scapularis were downloaded from VectorBase (www.vectorbase.org, last accessed November 19, 2013; Megy et al. 2012 (link)); and peptide sequences of Daphnia pulex were downloaded from the Joint Genome Institute http://genome.jgi-psf.org (filtered models v1.1, last accessed November 19, 2013; Colbourne et al. 2011 (link)).
We suggest that future NCBI SRA submissions contain information about what kit and modifications were used for library preparation, the adapters used and the distribution of insertion sizes in either or both the SRA submission and the methods narratives, even when the library preparation was outsourced. Such information would greatly facilitate effective reuse of these archived data sets.
For the GRP data set, all 15 transcriptomes generated by Wen et al. (2013) (link) were downloaded from GenBank (SRA accessions SRX286217–SRX286231). Paired-end 90 bp reads were filtered by quality scores, and adaptor contamination was removed with the same procedure as for MIL. The remaining reads were assembled using Trinity version 20140413 with default settings (Grabherr et al. 2011 (link)), and translated using TransDecoder version rel16JAN2014 assisted by pfam domain information (Haas et al. 2013 (link)). CDS of V. vinifera were downloaded from the Phytozome database v9.1 (Jaillon et al. 2007 (link); Goodstein et al. 2012 (link)).
For the HYM data set, all peptide sequences were kindly provided by the authors (Johnson et al. 2013 (link)), including peptide sequences from additional studies (http://www.ncbi.nlm.nih.gov/bioproject/66515; https://www.hgsc.bcm.edu/arthropods/bumble-bee-genome-project; Weinstock et al. 2006 (link); Bonasio et al. 2010 (link); Werren et al. 2010 (link); Smith, Smith, et al. 2011 (link); Smith, Zimin, et al. 2011 (link); Kocher et al. 2013 (link)). All peptides were reduced with cd-hit (-c 0.99 -n 5), and CDSwere reduced with cd-hit-est (-c 0.995 -n 10 -r 1; Fu et al. 2012 (link)).
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Publication 2014
Arthropods Cloning Vectors Daphnia DNA Library Genome Ixodes scapularis Joints Peptides Proteome RNA-Seq Transcriptome
Genome sequence data and gene annotations were downloaded from public data repositories: Drosophilidae (release FB2008_08) from FlyBase (Drysdale 2008 (link)), A. gambiae (release AgamP3.46) from Ensembl (Flicek et al. 2008 (link)), B. mori (release April 2008) from SilkDB (Wang et al. 2005 (link)), T. castaneum (release V3.0) from BeetleBase (Wang et al. 2007 (link)), A. mellifera (release 4.0) from National Center for Biotechnology Information (ftp://ftp.ncbi.nih.gov/genomes), Pediculus humanus (release PhumU1.1), and Ixodes scapularis (release IscaW1.1) from VectorBase (Lawson et al. 2007 (link)), Acyrthosiphon pisum (release June 2008) from AphidBase (http://www.aphidbase.com), and Daphnia pulex (release jgi060905) from wFleaBase (http://iubio.bio.indiana.edu/daphnia).
Publication 2011
Daphnia Drosophilidae Gene Annotation Genome Ixodes scapularis Lice, Body Pisum

Most recents protocols related to «Ixodes scapularis»

The primary objective of the study described herein was to evaluate the efficacy of a fipronil deer feed against I. scapularis and A. americanum ticks parasitizing white-tailed deer under pen conditions. The vector-host association and treatment concept are presented in Fig. 1. Ixodes scapularis was selected because it is a vector of seven human pathogens, with the most notable being those causing Lyme disease [31 (link), 32 (link)]. Lyme disease is the most common vector-borne disease in the USA, occurring most frequently in the Northeast and Midwest of the USA, and is estimated to account for approximately 500,000 human cases per year [32 (link)–34 (link)]. Amblyomma americanum was selected because it is suspected to vector five or more disease agents transmissible to humans [35 (link)], and is also linked with southern tick-associated rash illness (STARI) [36 (link)] and red meat allergy [37 (link), 38 ].

Vector-host association (a) and impact of fipronil deer feed consumption by white-tailed deer on reproductive female ticks (b). a Adult females attach to white-tailed deer and blood feed for approximately 6–11 days. Fully engorged females drop off of the host and begin the reproductive process. Females then oviposit and produce thousands of eggs. b Adult female ticks blood-feeding on white-tailed deer expire and are prevented from feeding to engorgement and detaching, subsequently preventing them from successfully ovipositing and reducing the reproductive rate

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Publication 2023
Amblyomma americanum BLOOD Cloning Vectors Deer Eggs Females fipronil Homo sapiens Hyperemia Ixodes scapularis Lyme Disease Odocoileus virginianus pathogenesis red meat allergy Reproduction Southern tick-associated rash illness Ticks Vector Borne Diseases Woman
Ticks were acquired from the Oklahoma State Tick Rearing Facility (OSU) (Stillwater, OK, USA). Equal numbers of each sex and species (I. scapularis and A. americanum) were obtained. For each lot of I. scapularis and A. americanum and prior to shipment to the study site, OSU screened a subsample of ticks (n = 10) for pathogens using standardized PCR assays. Ixodes scapularis were screened for B. burgdorferi and Anaplasma phagocytophilum. Amblyomma americanum were screened for the presence of Ehrlichia chaffeensis, Francisella tularensis and Rickettsia rickettsii. All PCR-screened ticks were negative for the above pathogens. Once ticks arrived at the study site, they were housed in an industry-standard desiccator with the relative humidity maintained at > 90% until enclosed in a feeding capsule for attachment to deer.
The feeding capsules utilized in this study were specifically designed for holding blood-feeding I. scapularis and A. americanum. Feeding capsules allow for the containment and localization of ticks and aid in facilitating blood-feeding [40 (link)]. The traditional stockinet sleeve method for feeding ticks on cattle [41 (link)–43 ] was determined to be inadequate for white-tailed deer. We instead developed a feeding capsule for deer application, which was in part based upon feeding capsules for ticks (referred to hereafter as tick feeding capsules) previously designed for tick-feeding on rabbits and sheep [44 ]. To make each capsule, sheets of ethylene–vinyl acetate foam were cut into three square pieces. Each square had a different outside area, allowing for flexibility (base, approx. 12 × 12 cm; middle, approx. 9 × 9 cm; top, approx. 7 × 7 cm), and had a combined depth of approximately 18 mm. The center of each square was cut away, creating an opening. The inner surface areas of the base and middle piece openings were each approximately 7 × 7 cm; the top piece had a smaller opening (approx. 1.5 × 1.5 cm) through which the ticks were to be inserted, which decreased the probability that ticks would escape through the top of the capsule (Additional file 3: Figure S2).
Deer were anesthetized using an intramuscular injection of telazol and xylazine at dosages of approximately 3 mg/kg and approximately 2.5 mg/kg, respectively. Once fully anesthetized, deer were weighed to the nearest 0.1 kg using a certified balance. Prior to blood collection and capsule attachment, large patches of fur on the neck were trimmed using electric horse clippers (Wahl®; Wahl Clipper Corp., Sterling, IL, USA). Prior to capsule attachment, 10 ml of blood was collected from the jugular vein of each deer using a 20-gauge needle. The blood from each individual deer was immediately placed into a vacutainer containing EDTA and was centrifuged for 10 min at 7000 revolutions/min. The plasma was transferred to 1.5-ml centrifuge tubes, which were then stored at − 20 °C until analysis.
Two identical tick feeding capsules were attached to opposing sides of the neck of each deer using a liberal amount of fabric glue (Tear Mender, St. Louis, MO, USA). Each capsule was held firmly in place for > 3 min to allow it to adhere to the skin and fur. For each deer, 20 I. scapularis mating pairs were placed within one capsule, and 20 A. americanum mating pairs were placed within the second capsule. Prior to tick attachment, 20 ticks (all same species and sex) were placed into a modified 5-ml syringe. Ticks were chilled in ice for approximately 5–10 min to slow movement. The 20 mating pairs were then carefully plunged into the capsules and a fine mesh lid was applied and reinforced with duct tape. Representative photos and video of the tick attachment process are presented in Fig. 2 and Additional file 4: Video S1, respectively. The capsules were further secured to deer by wrapping the neck with a veterinary bandage (3 M Company, St. Paul, MN, USA).

Tick capsule attachment and tick attachment. a Female ticks being plunged into capsule, b plunger being removed prior to mesh lid being secured, c completed, secured capsule being checked to ensure all corners are adhered to the neck, d closeup of completed capsule containing 20 Ixodes scapularis mating pairs

After completion of capsule and tick attachment, deer were given tolazine via intramuscular injection at a dose of 4 mg/kg to reverse the effects of the anesthetic. Deer were then housed in individual pens, observed closely until they were mobile and moving normally and monitored routinely for the remainder of the day.
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Publication 2023
Amblyomma americanum Anaplasma phagocytophilum Anesthetic Effect ARID1A protein, human Bandage Biological Assay BLOOD Capsule Cattle Deer Edetic Acid Ehrlichia chaffeensis Electricity Equus caballus Ethylenes Females Francisella tularensis Humidity Intramuscular Injection Ixodes scapularis Jugular Vein Movement Neck Needles Odocoileus virginianus Oryctolagus cuniculus pathogenesis Plasma Rickettsia rickettsii Sheep Skin Syringes Tears Telazol Ticks vinyl acetate Xylazine
The study took place in Dutchess County, New York, which has experienced high incidence rates of Lyme disease and other tick-borne diseases since the 1990s (Eisen et al, 2016 (link)). We selected two tick control interventions that had been demonstrated in small-scale studies to be effective in reducing population size of blacklegged ticks and that were considered safe for people, pets, and the environment (Dolan et al, 2004 (link); Schulze et al, 2017 (link); Schulze et al, 2007 (link); Williams et al, 2018 (link)).
One intervention was the deployment of TCS bait boxes, which attract small mammals to a food source inside an enclosed device and apply the tick-killing chemical fipronil to these mammals. Fipronil is lethal to ticks but harmless to mammals (Dolan et al, 2004 (link)). The other intervention was the biopesticide Met52, which consists of spores of the F52 strain of the fungus Metarhizium brunneum. Met52 solution is mixed with water and sprayed on the ground and low-lying vegetation where ticks dwell. By killing ticks attached to small mammals, TCS bait boxes are expected to affect the abundance of host-seeking (questing) ticks the following year, whereas Met52 targets host-seeking ticks, with impacts expected within days to weeks after deployment.
As previously described in detail (Keesing et al, 2022 (link)), we selected 24 residential neighborhoods that had reported high incidence of tick-borne diseases in Dutchess County in recent prior years. Neighborhoods consisted of ∼100 adjacent 1- and 2-family residences at moderate to high density, including their respective yards. Overall average property size was 0.19 ha. After a year of exhaustive efforts to recruit eligible households in each neighborhood to participate in the study, we enrolled a mean of 34% of properties in each neighborhood (range 24–44%).
Each of the neighborhoods was randomly assigned to one of four treatment categories, with six neighborhoods assigned to each category: (1) active TCS bait boxes and active Met52; (2) active TCS bait boxes and placebo Met52; (3) placebo TCS bait boxes and active Met52; and (4) placebo TCS bait boxes and placebo Met52. All participating properties in each neighborhood received the same treatment category. Placebo TCS bait boxes were identical to active bait boxes except that they contained no fipronil. Placebo Met52 consisted of water only. Participating households agreed not to deploy broadcast acaricides independent of our study throughout its duration.
Both products were used according to label instructions. TCS bait boxes, covered with galvanized steel shrouds (active and placebo), were deployed twice annually, in spring and mid-summer, at an average rate of 5.9 boxes per property (38/ha), at least 10 meters apart, preferentially in sites frequented by small mammals. Active Met52 was sprayed by truck-mounted high-pressure sprayers (GNC Industries, Inc.) at a concentration of 2.22 L per 378.5 L of water. Placebo Met52 (water only) was sprayed using the same truck-mounted sprayers at the same rate of 4 L of spray per 93 m2 at a pressure of 1.2–1.4 MPa. Spraying of active and placebo Met52 occurred twice each year, immediately before (April—early May) and during (late May–late June) the peak activity period for nymphal blacklegged ticks in this region (Ostfeld et al, 2018 (link)). Further details are provided in the supplementary online appendix of Keesing et al (2022 (link)) (https://wwwnc.cdc.gov/eid/article/28/5/21-1146_article).
The study design was double-masked ( = “double-blind”), in that neither the members of participating households nor the team of researchers collecting data were aware of the treatment category of any of the neighborhoods. All data collection, entry, and compilation were conducted with the treatment categories remaining masked.
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Publication 2023
Acaricides Biopesticides fipronil Food Households Iron Ixodes scapularis Mammals Medical Devices Metarhizium brunneum Nymph Pets Placebos Pressure Residency Spores, Fungal Steel Strains Tick-Borne Diseases Tick Control Ticks
To evaluate and analyze the methodology and robustness of the proposed multimodal PD–PT OCM-guided MPM imaging system, two phantom samples were fabricated. One of the samples was prepared by placing a commercially available ultrasonic gel on a 1 mm glass slide, and a 170 ± 5 µm thick coverslip was stacked on the ultrasonic gel, as shown in Fig. 7a. Here ultrasonic gel is used as its thermal properties are more stable and it thermal conductivity is close to biological tissues61 (link). The overall thickness of the fabricated sample was ~ 1500 µm, and the thickness of the introduced ultrasound gel was ~ 330 µm. Similarly, we developed a multilayered complex network phantom sample to mimic complex network structures in biological tissues, as shown in Fig. 7b. Multilayered lens tissues with an overall thickness of ~ 300 µm and distilled water were used instead of the ultrasound gel, and the total sample thickness was ~ 1470 µm. A rapid set epoxy was used to seal the area surrounding the coverslip in both samples to prevent the evaporation of water. The sample was mounted with a coverslip oriented towards the MPM objective, while the glass slide was oriented towards the OCM, as shown in Fig. 7a,b. To demonstrate the usefulness of PD–PT OCM guidance to ROIs in a biological large-volume sample for MPM imaging, a biological specimen (Ixodes dammini (Deer Tick) Female, w.m. Microscope Slide, Carolina Biological Supply, NC, USA) embedded in a microscope slide was used which was 3 mm in length and width (excluding some parts of legs). To obtain the PD–PT OCM photothermal responses of the phantom samples and the biological specimen, the initial MPM objective focus position was placed 30 µm below the coverslip, and the MPM objective lens was moved axially towards the sample in increments of 10 µm step interval, as shown in Fig. 7c. Upon each movement of the MPM objective, the mechanical shutter was set to open for the desired time period (350 ms, unless mentioned otherwise) for each PD–PT OCM signal acquisition. The observation points of the OCM, where the photothermal responses were measured, were selected from the points within the ROI that provided the appropriate photothermal signal. Principally, the step interval specified here is not an absolute value that must be strictly adhered to. For instance, a 20 µm step interval was employed to generate the photothermal response of the biological specimen (female Ixodes dammini) depicted in Fig. 5. The step interval and total readings can be selected adaptively based on the composition and thickness of the sample.

Schematic of phantom samples and the PD–PT OCM experimental protocol. (a) is the schematic cross-sectional representation of the simple phantom sample fabricated with ultrasound gel. (b) is a schematic cross-sectional representation of the complex network phantom sample fabricated with multilayered lens tissue. c is the figurative depiction of MPM objective positioning for the PD–PT OCM based methodology. Figures not drawn to scale.

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Publication 2023
A-A-1 antibiotic Biopharmaceuticals Epoxy Resins Females Ixodes scapularis Leg Lens, Crystalline Microscopy Movement PD protocol Phocidae Quickset cement Tissues Ultrasonics Ultrasonography
Female C3H/HeJ or NOD.Cg-PrkdSCID/J (SCID) mice (The Jackson Laboratory) were inoculated with 1 × 105 organisms via intradermal injection. 4-to-8 weeks after inoculation, animals were sacrificed, and blood and tissues were collected for serology and culturing, respectively. Pathogen-free Ixodes scapularis larvae were purchased from Oklahoma State University Tick Rearing Facility (Stillwater, Oklahoma, USA). Naive larvae were infected by immersion (95 (link)), fed to repletion on naive C3H/HeJ mice, and allowed to molt. Infected nymphs were fed on naive C3H/HeJ mice until fully engorged as previously described (13 (link), 96 (link)).
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Publication 2023
Animals Blood Females Intradermal Injection Ixodes scapularis Larva Mice, Inbred C3H Molting Nymph Pathogenicity SCID Mice Submersion Ticks Tissues Vaccination

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More about "Ixodes scapularis"

Ixodes scapularis, commonly known as the deer tick or black-legged tick, is a species of tick that is a major vector for several infectious diseases, including Lyme disease, anaplasmosis, and babesiosis.
This tick is found primarily in the eastern and central regions of the United States, and its geographic range has been expanding in recent years.
Optimizing research on Ixodes scapularis can be achieved through the use of PubCompare.ai, an AI-driven platform that enhances the reproducibility and accuracy of scientific investigations.
PubCompare.ai allows researchers to easily locate relevant protocols from literature, preprints, and patents, and leverage AI-driven comparisons to identify the best protocols and products for their studies.
In addition to ticks, Ixodes scapularis research may involve the use of other biological models and reagents, such as DMEM (Dulbecco's Modified Eagle Medium), C3H/HeN mice, SH-SY5Y cell lines, Complete EMEM (Eagle's Minimum Essential Medium) medium, L15B300 medium, Tryptose phosphate broth, Luria-Bertani (LB) medium, and the CRL-2266 cell line.
These tools and materials can be utilized to study the biology, pathogenesis, and control of Ixodes scapularis and the diseases it transmits.
By streamlining the research process and leveraging the capabilities of PubCompare.ai, scientists can achieve more reliable and reproducible results in their Ixodes scapularis studies, ultimately leading to advancements in our understanding and management of these important disease vectors.