Ixodes scapularis
This tick is commonly found in the eastern and central United States, and its range has been expanding in recent years.
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Most cited protocols related to «Ixodes scapularis»
This analysis was based on the amino acid sequence of mature An. gambiae gSG6 (“UniProtKB/TrEMBL:Q9BIH5” and “gi:13537666”, [23] (link)).
The identification of putative linear B-cell epitopes of An. gambiae gSG6 was performed by computerized predictions of antigenicity based on physico-chemical properties of the amino-acid sequences with the BcePred database [24] and with the FIMM database [25] (link). We also identified the MHC class 2 binding regions using the ProPred-2 online service [26] (link).
Sequence alignments were done with the Tblastn program in Vectorbase database [27] (link) which enabled comparing a sequence of gSG6 peptides with known genomes or EST libraries of Aedes aegypti, Ixodes scapularis, Culex pipiens, Pediculus humanus, Glossina morsitans, Rhodnius prolixus, Lutzomia longipalpis and Phlebotomus papatasi. Concomitantly, we investigated sequence alignments with the Blast program to compare the gSG6 peptides sequence with all non-redundant GenBank CDS database [28] (link).
Peptides were synthesized and purified (>80%) with Genosys (Sigma-Genosys, Cambridge, UK) with an added N-terminal biotin. All peptides were shipped lyophilized and they were resuspended in 0.22 µm filtered milliQ water and stored in aliquots at −80°C.
Auanema rhodensis n. sp. (strain SB347) was originally isolated from blood-engorged deer ticks (Ixodes scapularis) that were used as bait for nematodes. The ticks were placed in the upper layer of the soil in Kingston (University of Rhode Island), R.I., United States, in September 2001 by E. Zhioua (W. Sudhaus, pers. comm.). Subsequently, a laboratory culture of A. rhodensis SB347 was established by W. Sudhaus14 (link). A. freiburgensis n. sp. (strain SB372) was isolated from a dung pile in Freiburg, Germany, in August 2003 by W. Sudhaus. Both strains have been kept in the laboratory on NGM plates seeded with Escherichia coli OP50, as is standard for C. elegans26 and preserved cryogenically (e.g. at the NYU Rhabditid Collection).
Both species produce males and females, and hermaphrodites after passage through the dauer stage19 (link). The genders were collected separately as follows. In A. rhodensis, most female embryos are produced by their mother within the first 15 hours of adulthood19 (link), 22 (link). To obtain females, dauer juveniles were placed individually on a small agar plate seeded with OP50 and cultured at 20 °C until adulthood. After these hermaphrodites oviposited 25 eggs or fewer, they were removed. The F1 generation developed into adult females. To obtain hermaphrodites, dauer juveniles were transferred from old cultures onto seeded NGM plates and collected with the Baermann funnel technique after they reached adulthood. Males were hand-picked from 3- to 7-day-old cultures. For A. freiburgensis, females were obtained by letting hermaphrodites self-fertilize on individual plates. Most self-progeny under these conditions are either female or male. Hermaphrodites were obtained by isolating dauer juveniles from crowded plates and letting them develop into adults.
We suggest that future NCBI SRA submissions contain information about what kit and modifications were used for library preparation, the adapters used and the distribution of insertion sizes in either or both the SRA submission and the methods narratives, even when the library preparation was outsourced. Such information would greatly facilitate effective reuse of these archived data sets.
For the GRP data set, all 15 transcriptomes generated by Wen et al. (2013) (link) were downloaded from GenBank (SRA accessions SRX286217–SRX286231). Paired-end 90 bp reads were filtered by quality scores, and adaptor contamination was removed with the same procedure as for MIL. The remaining reads were assembled using Trinity version 20140413 with default settings (Grabherr et al. 2011 (link)), and translated using TransDecoder version rel16JAN2014 assisted by pfam domain information (Haas et al. 2013 (link)). CDS of V. vinifera were downloaded from the Phytozome database v9.1 (Jaillon et al. 2007 (link); Goodstein et al. 2012 (link)).
For the HYM data set, all peptide sequences were kindly provided by the authors (Johnson et al. 2013 (link)), including peptide sequences from additional studies (
Most recents protocols related to «Ixodes scapularis»
Vector-host association (
The feeding capsules utilized in this study were specifically designed for holding blood-feeding I. scapularis and A. americanum. Feeding capsules allow for the containment and localization of ticks and aid in facilitating blood-feeding [40 (link)]. The traditional stockinet sleeve method for feeding ticks on cattle [41 (link)–43 ] was determined to be inadequate for white-tailed deer. We instead developed a feeding capsule for deer application, which was in part based upon feeding capsules for ticks (referred to hereafter as tick feeding capsules) previously designed for tick-feeding on rabbits and sheep [44 ]. To make each capsule, sheets of ethylene–vinyl acetate foam were cut into three square pieces. Each square had a different outside area, allowing for flexibility (base, approx. 12 × 12 cm; middle, approx. 9 × 9 cm; top, approx. 7 × 7 cm), and had a combined depth of approximately 18 mm. The center of each square was cut away, creating an opening. The inner surface areas of the base and middle piece openings were each approximately 7 × 7 cm; the top piece had a smaller opening (approx. 1.5 × 1.5 cm) through which the ticks were to be inserted, which decreased the probability that ticks would escape through the top of the capsule (Additional file
Deer were anesthetized using an intramuscular injection of telazol and xylazine at dosages of approximately 3 mg/kg and approximately 2.5 mg/kg, respectively. Once fully anesthetized, deer were weighed to the nearest 0.1 kg using a certified balance. Prior to blood collection and capsule attachment, large patches of fur on the neck were trimmed using electric horse clippers (Wahl®; Wahl Clipper Corp., Sterling, IL, USA). Prior to capsule attachment, 10 ml of blood was collected from the jugular vein of each deer using a 20-gauge needle. The blood from each individual deer was immediately placed into a vacutainer containing EDTA and was centrifuged for 10 min at 7000 revolutions/min. The plasma was transferred to 1.5-ml centrifuge tubes, which were then stored at − 20 °C until analysis.
Two identical tick feeding capsules were attached to opposing sides of the neck of each deer using a liberal amount of fabric glue (Tear Mender, St. Louis, MO, USA). Each capsule was held firmly in place for > 3 min to allow it to adhere to the skin and fur. For each deer, 20 I. scapularis mating pairs were placed within one capsule, and 20 A. americanum mating pairs were placed within the second capsule. Prior to tick attachment, 20 ticks (all same species and sex) were placed into a modified 5-ml syringe. Ticks were chilled in ice for approximately 5–10 min to slow movement. The 20 mating pairs were then carefully plunged into the capsules and a fine mesh lid was applied and reinforced with duct tape. Representative photos and video of the tick attachment process are presented in Fig.
Tick capsule attachment and tick attachment.
One intervention was the deployment of TCS bait boxes, which attract small mammals to a food source inside an enclosed device and apply the tick-killing chemical fipronil to these mammals. Fipronil is lethal to ticks but harmless to mammals (Dolan et al, 2004 (link)). The other intervention was the biopesticide Met52, which consists of spores of the F52 strain of the fungus Metarhizium brunneum. Met52 solution is mixed with water and sprayed on the ground and low-lying vegetation where ticks dwell. By killing ticks attached to small mammals, TCS bait boxes are expected to affect the abundance of host-seeking (questing) ticks the following year, whereas Met52 targets host-seeking ticks, with impacts expected within days to weeks after deployment.
As previously described in detail (Keesing et al, 2022 (link)), we selected 24 residential neighborhoods that had reported high incidence of tick-borne diseases in Dutchess County in recent prior years. Neighborhoods consisted of ∼100 adjacent 1- and 2-family residences at moderate to high density, including their respective yards. Overall average property size was 0.19 ha. After a year of exhaustive efforts to recruit eligible households in each neighborhood to participate in the study, we enrolled a mean of 34% of properties in each neighborhood (range 24–44%).
Each of the neighborhoods was randomly assigned to one of four treatment categories, with six neighborhoods assigned to each category: (1) active TCS bait boxes and active Met52; (2) active TCS bait boxes and placebo Met52; (3) placebo TCS bait boxes and active Met52; and (4) placebo TCS bait boxes and placebo Met52. All participating properties in each neighborhood received the same treatment category. Placebo TCS bait boxes were identical to active bait boxes except that they contained no fipronil. Placebo Met52 consisted of water only. Participating households agreed not to deploy broadcast acaricides independent of our study throughout its duration.
Both products were used according to label instructions. TCS bait boxes, covered with galvanized steel shrouds (active and placebo), were deployed twice annually, in spring and mid-summer, at an average rate of 5.9 boxes per property (38/ha), at least 10 meters apart, preferentially in sites frequented by small mammals. Active Met52 was sprayed by truck-mounted high-pressure sprayers (GNC Industries, Inc.) at a concentration of 2.22 L per 378.5 L of water. Placebo Met52 (water only) was sprayed using the same truck-mounted sprayers at the same rate of 4 L of spray per 93 m2 at a pressure of 1.2–1.4 MPa. Spraying of active and placebo Met52 occurred twice each year, immediately before (April—early May) and during (late May–late June) the peak activity period for nymphal blacklegged ticks in this region (Ostfeld et al, 2018 (link)). Further details are provided in the supplementary online appendix of Keesing et al (2022 (link)) (
The study design was double-masked ( = “double-blind”), in that neither the members of participating households nor the team of researchers collecting data were aware of the treatment category of any of the neighborhoods. All data collection, entry, and compilation were conducted with the treatment categories remaining masked.
Schematic of phantom samples and the PD–PT OCM experimental protocol. (
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More about "Ixodes scapularis"
This tick is found primarily in the eastern and central regions of the United States, and its geographic range has been expanding in recent years.
Optimizing research on Ixodes scapularis can be achieved through the use of PubCompare.ai, an AI-driven platform that enhances the reproducibility and accuracy of scientific investigations.
PubCompare.ai allows researchers to easily locate relevant protocols from literature, preprints, and patents, and leverage AI-driven comparisons to identify the best protocols and products for their studies.
In addition to ticks, Ixodes scapularis research may involve the use of other biological models and reagents, such as DMEM (Dulbecco's Modified Eagle Medium), C3H/HeN mice, SH-SY5Y cell lines, Complete EMEM (Eagle's Minimum Essential Medium) medium, L15B300 medium, Tryptose phosphate broth, Luria-Bertani (LB) medium, and the CRL-2266 cell line.
These tools and materials can be utilized to study the biology, pathogenesis, and control of Ixodes scapularis and the diseases it transmits.
By streamlining the research process and leveraging the capabilities of PubCompare.ai, scientists can achieve more reliable and reproducible results in their Ixodes scapularis studies, ultimately leading to advancements in our understanding and management of these important disease vectors.