To each remaining seed alignment we applied a "naive" combinatorial approach that extracts sub-alignments with k ∈ {2, 3, 5, 7, 10, 15} sequences for a given average pairwise sequence identity range (APSI; a measure for sequence homology computed with ALISTAT from the squid package [43 ]). Therefore we computed identities for all sequence pairs from an alignment and selected those pairs possessing the desired APSI ± 10 %. From the remaining list of sequences we randomly picked k unique sequences. Additionally we dropped all alignments with an SCI below 0.6 to assure the structural quality of the alignments and to make sure that the SCI can be applied later to score the test alignments. This way we generated overall 18,990 reference alignments with an average SCI of 0.93; the data-set1 used in [22 (link)] consists of only 388 alignments with an average SCI of 0.89. For further details see Tables
Squid
They are characterized by a streamlined, torpedo-shaped body, eight arms, and two tentacles used for capturing prey.
Squids are found in all the world's oceans and play a crucial role in many marine ecosystems.
They are known for their remarkable abilities, including the capacity to change color and texture for camouflage, expel ink to evade predators, and possess complex nervous systems.
Squids have long been the subject of scientific research, with their unique physiology and behaviors offering insights into evolutionary adaptations and the wonders of the ocean.
Optimizing Squid research with the AI-driven platform of PubCompare.ai can help researchers easily locate and compare protocols from literature, preprints, and patents, identifiying the best procedures and products to improve reproducibility and accuracy in their Squid experiments.
Most cited protocols related to «Squid»
To each remaining seed alignment we applied a "naive" combinatorial approach that extracts sub-alignments with k ∈ {2, 3, 5, 7, 10, 15} sequences for a given average pairwise sequence identity range (APSI; a measure for sequence homology computed with ALISTAT from the squid package [43 ]). Therefore we computed identities for all sequence pairs from an alignment and selected those pairs possessing the desired APSI ± 10 %. From the remaining list of sequences we randomly picked k unique sequences. Additionally we dropped all alignments with an SCI below 0.6 to assure the structural quality of the alignments and to make sure that the SCI can be applied later to score the test alignments. This way we generated overall 18,990 reference alignments with an average SCI of 0.93; the data-set1 used in [22 (link)] consists of only 388 alignments with an average SCI of 0.89. For further details see Tables
Most recents protocols related to «Squid»
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The treatment pots were baited with the new bait produced by Norbait AS (
To compare the catch efficiency of pots using the two bait types, the pots of each bait type were deployed on two separate parallel longlines with approximately 700 m distance (
Experimental setup used during the fishing trials. Two mainlines with pots baited with control bait (squid) (blue) and experimental bait (green) were deployed in parallel to each other with 700 m distance between the two. The pots on each mainline had a distance of 25 m. Both mainlines were deployed simultaneously and in the same fishing area. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
After the pots were recovered onboard, the crabs of each pot were sorted into target-sized and undersized individuals and the number of crabs in each fraction was counted for each pot in each line (experimental bait and standard bait) separately. This protocol was followed because of the time constraints and capture rates imposed by sampling during commercial fishing did not enable measuring and registering the precise size for the snow crab captured.
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More about "Squid"
Squids are a diverse and fascinating group of marine cephalopods, known for their unique physiological and behavioral traits.
These torpedo-shaped, eight-armed creatures are found in oceans around the world, playing a crucial role in many marine ecosystems.
Squids possess remarkable abilities, such as the capacity to change color and texture for camouflage, expel ink to evade predators, and boast complex nervous systems.
These adaptations have long been the subject of scientific inquiry, offering insights into the wonders of the ocean and the evolutionary processes that have shaped these remarkable creatures.
Optimizing squid research is crucial for advancing our understanding of these enigmatic animals.
The AI-driven platform of PubCompare.ai can greatly assist researchers in this endeavor.
By easily locating and comparing protocols from literature, preprints, and patents, researchers can identify the best procedures and products to improve the reproducibility and accuracy of their squid experiments.
In addition to the PubCompare.ai platform, various SQUID (Superconducting Quantum Interference Device) magnetometers, such as the MPMS-XL, PPMS, SQUID-VSM, and MPMS3, have been instrumental in the study of squid-related phenomena.
These cutting-edge instruments allow researchers to precisely measure the magnetic properties of squid samples, providing invaluable data for understanding their physiology and behavior.
By leveraging the insights gained from the MeSH term description, the metadescription, and the additional SQUID-related information, researchers can optimize their squid studies and uncover new discoveries about these captivating marine creatures.
The combination of advanced tools, such as PubCompare.ai and SQUID magnetometers, along with a deep understanding of squid biology, can lead to breakthroughs in the field of cephalopod research.