Illumina reads were de novo assembled using ABySS1 (link) (version 1.2.1), SOAPdenovo6 (link) (version 1.04) or Trans-ABySS27 (link). Command-line parameters used with ABySS were “abyss-pe k=25 E=0 n=10 in= ‘left.fa right.fa’ ”, employing a K-mer length of 25. Likewise, a 25-mer length was employed with SOAPdenovo along with other default parameters. Trans-ABySS27 (link) was run on Mouse and S. pombe using a set of k-mers including 26, 31, 36, 41, and 46 followed by merging the results by running the 1st stage of the trans-ABySS analysis pipeline. In the case of Whitefly, all k-mers from 26 through 46 were used so as to maximize sensitivity given the smaller input number of reads.
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Eukaryote
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Whiteflies
Whiteflies
Whiteflies are small, winged insects that feed on the sap of plants.
They are found worldwide and can be a significant agricultural pest, damaging crops and reducing yields.
Whiteflies come in many species, each with their own unique characteristics and behaviors.
They can be challenging to control, as they develop resistance to pesticides and tend to hide on the underside of leaves.
Effective management strategies often involve a combination of cultural, biological, and chemical control methods.
Understanding the biology and ecology of whiteflies is crucial for developing integrated pest management plans to protect valuable crops and plants.
They are found worldwide and can be a significant agricultural pest, damaging crops and reducing yields.
Whiteflies come in many species, each with their own unique characteristics and behaviors.
They can be challenging to control, as they develop resistance to pesticides and tend to hide on the underside of leaves.
Effective management strategies often involve a combination of cultural, biological, and chemical control methods.
Understanding the biology and ecology of whiteflies is crucial for developing integrated pest management plans to protect valuable crops and plants.
Most cited protocols related to «Whiteflies»
GPER protein, human
Hypersensitivity
MER-25
Mice, Laboratory
Schizosaccharomyces pombe
Whiteflies
Illumina reads were de novo assembled using ABySS1 (link) (version 1.2.1), SOAPdenovo6 (link) (version 1.04) or Trans-ABySS27 (link). Command-line parameters used with ABySS were “abyss-pe k=25 E=0 n=10 in= ‘left.fa right.fa’ ”, employing a K-mer length of 25. Likewise, a 25-mer length was employed with SOAPdenovo along with other default parameters. Trans-ABySS27 (link) was run on Mouse and S. pombe using a set of k-mers including 26, 31, 36, 41, and 46 followed by merging the results by running the 1st stage of the trans-ABySS analysis pipeline. In the case of Whitefly, all k-mers from 26 through 46 were used so as to maximize sensitivity given the smaller input number of reads.
GPER protein, human
Hypersensitivity
MER-25
Mice, Laboratory
Schizosaccharomyces pombe
Whiteflies
All plants used in the study were grown under greenhouse conditions at the International Institute of Tropical Agriculture (IITA), Dar es Salaam, Tanzania. The varieties of cassava and tomato used were Albert and Moneymaker, respectively, while sweet potato and cotton were local landraces. All greenhouse plants were grown in pots with a soil mix of forest soil and manure mixed in a 4:1 ratio. Plants were typically 20–30 cm tall or with a minimum of five leaves. “Albert” is known to be preferred by whiteflies, while the tomato cultivar—Moneymaker—is extensively used in the scientific literature.
Considering the numerous reports of vector feeding behavior manipulation by viruses, it was important to ensure the use of virus-free cassava plants (Liu et al., 2013 (link); Moreno-Delafuente et al., 2013 (link); Lu et al., 2017 (link)). All cassava planting material was obtained from CMD and CBSD asymptomatic fields in Mtwara Region, Tanzania. Furthermore, leaf samples were taken from each stem and tested for the presence of Cassava Brown Streak Ipomoviruses using real-time RT-PCR to exclude the possibility of asymptomatic infections. The CBSI virus testing was done using the protocol described for cassava by Shirima et al. (2017 (link)). Leaf samples in the form of the middle leaflet were taken from the fifth youngest leaf from each cassava stem cutting used for planting. Samples were dried between two sheets of paper at room temperature for 4 days. Total RNA was extracted using the acetyltrimetyl ammonium bromide (CTAB) protocol, cassava complementary DNA (cDNA) was synthetized and real-time polymerase chain reaction was performed using primers, probes, and cycling conditions described in Shirima et al. (2017 (link)). “Albert” is resistant to CMD, and since only symptomless plants were selected for planting material, the risk of infection was considered low and the material was not tested for the presence of CMBs. The assumption of the absence CMD was further supported as none of the grown plants exhibited the symptoms. Sweet potato plants were asymptomatic. Vegetative material used to plant them has been maintained under insect-proof screenhouse conditions, without symptoms of virus infection, for 3 years. Tomato and cotton were grown from certified seed.
Considering the numerous reports of vector feeding behavior manipulation by viruses, it was important to ensure the use of virus-free cassava plants (Liu et al., 2013 (link); Moreno-Delafuente et al., 2013 (link); Lu et al., 2017 (link)). All cassava planting material was obtained from CMD and CBSD asymptomatic fields in Mtwara Region, Tanzania. Furthermore, leaf samples were taken from each stem and tested for the presence of Cassava Brown Streak Ipomoviruses using real-time RT-PCR to exclude the possibility of asymptomatic infections. The CBSI virus testing was done using the protocol described for cassava by Shirima et al. (2017 (link)). Leaf samples in the form of the middle leaflet were taken from the fifth youngest leaf from each cassava stem cutting used for planting. Samples were dried between two sheets of paper at room temperature for 4 days. Total RNA was extracted using the acetyltrimetyl ammonium bromide (CTAB) protocol, cassava complementary DNA (cDNA) was synthetized and real-time polymerase chain reaction was performed using primers, probes, and cycling conditions described in Shirima et al. (2017 (link)). “Albert” is resistant to CMD, and since only symptomless plants were selected for planting material, the risk of infection was considered low and the material was not tested for the presence of CMBs. The assumption of the absence CMD was further supported as none of the grown plants exhibited the symptoms. Sweet potato plants were asymptomatic. Vegetative material used to plant them has been maintained under insect-proof screenhouse conditions, without symptoms of virus infection, for 3 years. Tomato and cotton were grown from certified seed.
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ammonium bromide
Asymptomatic Infections
Cetrimonium Bromide
Cloning Vectors
DNA, Complementary
Feeding Behaviors
Forests
Gossypium
Infection
Insecta
Ipomoea batatas
Ipomovirus
Lycopersicon esculentum
Manihot
Marijuana Abuse
Oligonucleotide Primers
Plant Leaves
Plants
Plant Viruses
Precursor T-Cell Lymphoblastic Leukemia-Lymphoma
Real-Time Polymerase Chain Reaction
Stem, Plant
Training Programs
Virus
Virus Diseases
Whiteflies
Three species of whiteflies (B. tabaci) were used in in this study: (1) SSA1-SG3 which colonizes cassava in coastal Tanzania, (2) Indian Ocean (IO), and (3) MED, both of which colonize sweet potato and other vegetables, but not cassava. The SSA1-SG3 colony was established by collecting whiteflies from cassava at Chambezi in Bagamoyo District, Coast Region in May 2017. The IO and MED colonies were established by collecting whiteflies from sweet potato at Kibaha Research Station, Kibaha District, Coast Region in June 2017. The colonies were maintained in the greenhouse with partially controlled environment conditions (installed with cooling fans and air conditioning) with natural light (12L: 12D) and temperature ranging between 24 and 35°C. The colonies were reared on their respective host plants: SSA1-SG3 on cassava variety Albert; IO and MED on sweet potato. Host plants were planted in 30 cm diameter plastic pots held in meshed cages (100 × 50 × 50 cm). The colonies were transferred to fresh plants at intervals of 3–4 weeks. The colony species were periodically confirmed by PCR and partial sequencing of the mitochondrial DNA cytochrome oxidase I (mtCOI) gene.
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ARID1A protein, human
DNA, Mitochondrial
Environment, Controlled
Genes
Genes, Mitochondrial
Ipomoea batatas
Light
Manihot
Marijuana Abuse
Mitochondria
Oxidase, Cytochrome-c
Plants
Vegetables
Whiteflies
Eleven cassava genotypes selected from Uganda and Tanzania were screened for field resistance to both UCBSV and CBSV in Uganda. Tanzanian genotypes reported to be resistant/tolerant in Tanzania were AR40-6, NDL06/132, Kiroba and Namikonga (also known as Kaleso), and Ugandan genotypes reported to be tolerant in Uganda were NASE 14 (MM96/4271), 72-TME 14 (NASE 19), NASE 1 and TZ/130 (Table 5 ). Genotypes Albert from Tanzania, and Kibaha and TME 204 from Uganda were included as susceptible controls. Genotypes from Tanzania were obtained as virus-free tissue culture plantlets while those from Uganda were sourced as stakes from CBSD disease-free areas. All planting material was diagnosed as free of (U)CBSV prior to planting. Tissue culture plantlets were hardened according to [38 ]. Field trials were established in the first rains (March – May) of 2012 at National Crops Resources Research Institute (NaCRRI), Central Uganda (lat/lng: 0.529, 32.612, Alt 1222 m), an area with high CBSD and whitefly pressure [39 (link)]. Test genotypes were established in two row unreplicated plots each containing 10 plants with a spacing of 1 m × 1 m. Each plot was separated by a CBSV/UCBSV infected spreader row of TME 204. Plants of TME 204 used in the spreader rows were obtained in fields that had a CBSD incidence of 100% and a mean severity of 4 and 4.5 for shoot and root necrosis respectively. This selection was done to ensure that infector line had high viral load to effectively augment CBSD pressure. The genotypes were grown for 12 months under rainfed conditions on a sandy-loam soil and no fertilizer or herbicide was applied. Regular weeding was undertaken.
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Agricultural Crops
Genotype
Herbicides
Manihot
Necrosis
Plant Roots
Plants
Pressure
Rain
Tissues
Virus
Whiteflies
Most recents protocols related to «Whiteflies»
To study the effect of the JH pathway on Vg expression and Vg localization in whiteflies, approximately 800 female adult whiteflies at day 1 after emergence were injected with 1.5 μg/μL dsJHAMT and incubated on cotton leaf disks by using a previously described method (13 (link), 45 (link), 47 (link), 57 (link), 61 (link)). Control whiteflies were injected with 1.5 μg/μL dsGFP. Whiteflies were collected at 5 and 6 days after dsRNA injection. The survival rates of injected whiteflies were 60% for dsGFP and 40% for dsJHAMT at day 5 after injection. RNA was extracted from the whole body of 10 female adult whiteflies for each of three biological replicates. The expression of JHAMT at days 5 and 6 after dsJHAMT injection and the expression of Vg at day 5 after dsJHAMT injection were examined using qRT-PCR. To detect whether silencing whitefly JHAMT affects Vg localization in ovarioles and bacteriocytes, whiteflies were collected at day 5 after injection. For each biological replicate, ovarioles and bacteriocytes were dissected from 30 female adult whiteflies, fixed, permeabilized, and incubated with antibodies against Vg for ovarioles and bacteriocytes. The samples were incubated with no antibodies against Vg as the negative control. Three biological replicates were conducted. Images were analyzed using an FV3000 confocal microscope (Olympus, Japan). The fluorescence intensity of Vg was analyzed by Image J software. In each of three biological replicates, four ovarioles and three bacteriocytes of dsGFP-injected whiteflies and dsJHAMT-injected whiteflies were used for fluorescence intensity analysis. To further test the effect of JH on Vg expression, approximately 300 female adult wild-type whiteflies at 3 to 4 days after emergence were injected with 0.5 μg/μL pyriproxyfen (JH analog) dissolved in distilled water by using an Eppendorf microinjection system (Hamburg, Germany). Distilled water-injected whiteflies were used as the control. Expression of Vg in female adult whiteflies at days 1 and 2 after the whiteflies were microinjected with pyriproxyfen was examined using qRT-PCR with three biological replicates.
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Antibodies
Biopharmaceuticals
DNA Replication
Fluorescence
Gossypium
Human Body
Microinjections
Microscopy, Confocal
Plant Leaves
pyriproxyfen
RNA, Double-Stranded
Whiteflies
Woman
The interaction between Vg and Portiera was examined using an IC-PCR assay by previously described protocols (29 (link)). PCR tubes were coated with 25 μL antibody against Vg (1:1,000 diluted in coating buffer), for 1.5 h at 37°C, and then washed five times for 5 min each time with 50 μL washing buffer. Homogenates of bacteriocytes and heads that were collected from 8 to 10 whiteflies in 5 μL PBS were incubated for 18 h at 4°C in the coated PCR tubes. The tubes were washed five times, 5 min each time, with 25 μL washing buffer and dried. PCR amplification of Portiera bound to the Vg protein, which was itself bound to the antibody-coated tubes, was performed with Portiera-specific 16S rRNA gene fragment primers (Table S1 ). The control no-antibody-coated tubes were incubated with a homogenate of the bacteriocytes and heads of whiteflies, and antibody-coated tubes incubated with a homogenate of whitefly heads not containing bacteriocytes served as controls.
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Biological Assay
Buffers
Head
Immunoglobulins
Oligonucleotide Primers
Proteins
Ribosomal RNA Genes
Whiteflies
To investigate whether silencing Vg influences Vg localization, symbiont localization and abundance, and the numbers of ovarioles and eggs, approximately 2,000 female adult whiteflies infected with Portiera at day 1 after emergence were injected with 1.0 μg/μL dsVg in injection buffer by using an Eppendorf microinjection system (Hamburg, Germany) and incubated on cotton leaf disks as described above. Control whiteflies were injected with 1.0 μg/μL dsGFP. Whiteflies were collected at 3 days after dsRNA injection. The survival rates of injected whiteflies were 75% for dsGFP and 40% for dsVg at day 3 after injection. RNA was extracted from eight female adult whiteflies for each of three biological replicates to examine the expression of Vg 3 days after dsRNA injection. To examine whether silencing whitefly Vg affects Vg localization in ovarioles and bacteriocytes and Portiera localization in bacteriocytes, whiteflies were collected at days 1, 3, and 5 after injection. Whitefly ovarioles and bacteriocytes were dissected, fixed, permeabilized, and incubated with antibodies against Vg for ovarioles as well as antibodies against Vg and a fluorescent probe for Portiera in bacteriocytes as described above. To examine whether silencing whitefly Vg affects Hamiltonella localization in bacteriocytes, whiteflies were collected at day 3 after injection. Whitefly bacteriocytes were dissected, fixed, permeabilized, and hybridized with the fluorescent probe for Portiera and Hamiltonella in bacteriocytes. Three biological replicates were conducted. Images were analyzed using a FV3000 confocal microscope (Olympus, Japan). The fluorescence intensity of Vg and Portiera was analyzed by Image J software. In each of three biological replicates, three ovarioles and bacteriocytes of dsGFP-injected whiteflies and dsVg-injected whiteflies were used for fluorescence intensity analysis of Vg and three bacteriocytes of dsGFP-injected whiteflies and dsVg-injected whiteflies were used for fluorescence intensity analysis of Portiera. To test whether silencing whitefly Vg influences the abundance of symbionts Portiera and Hamiltonella, DNA was extracted from the whole body of individual female adult whiteflies for each of 10 biological replicates and from bacteriocytes and ovaries of eight female adult whiteflies for each of five biological replicates at day 3 after the whiteflies were microinjected with dsVg. Then, qPCR was performed as described above. In parallel, ovarioles were dissected in PBS at pH 7.4, and the number of ovarioles was scored in 10 individuals for dsVg-injected and dsGFP-injected female adult whiteflies at day 3 postinjection. To determine if silencing Vg influences whitefly fecundity, individual Vg-injected and dsGFP-injected whiteflies were transferred onto cotton leaf disks and kept on 1.5% agar plates at 26 ± 2°C, with a 14-h-light:10-h-dark photoperiod and 60% to 80% relative humidity (RH). Egg numbers were recorded for the surviving whiteflies. Nineteen biological replicates of individuals were conducted at day 3 postinjection.
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Adult
Agar
Antibodies
Biopharmaceuticals
Buffers
Eggs
Females
Fertility
Fluorescence
Fluorescent Probes
Gossypium
Human Body
Humidity
Light
Microinjections
Microscopy, Confocal
Ovary
Plant Leaves
RNA, Double-Stranded
Whiteflies
Woman
Portiera was eliminated by antibiotic treatment as described above. Following the antibiotic treatment, B. tabaci whiteflies were transferred to cotton plants. F1 female adults were collected. The DNA was extracted from 12 female B. tabaci adults (at 3 to 7 days after eclosion) and used for symbiont quantification by qPCR. To test whether Portiera elimination affects the ovariole number, the number of ovarioles was scored in 10 individuals dissected in PBS at pH 7.4 for +PBt and –PBt female adult whiteflies (within 4 days after eclosion). To test whether Portiera elimination affects Vg localization in ovarioles and bacteriocytes, ovarioles and bacteriocytes of female B. tabaci adults (at 3 to 7 days after eclosion) were dissected, fixed, permeabilized, and incubated with antibodies against Vg as described above. Three biological replicates were conducted. Images were collected and analyzed on an FV3000 confocal microscope (Olympus, Japan). The fluorescence intensity of Vg was analyzed by Image J software. In each of three biological replicates, three ovarioles and bacteriocytes of +PBt and –PBt whiteflies were used for fluorescence intensity analysis.
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Adult
Antibiotics
Antibodies
Biopharmaceuticals
Fluorescence
Gossypium
Microscopy, Confocal
Whiteflies
Woman
Bacteriocytes and/or ovarioles were dissected from 30 female adult whiteflies at day 1 after emergence, female adult whiteflies at various days after dsRNA injection, and Portiera-infected and Portiera-cured adult female whiteflies as well as rapamycin-treated adult female whiteflies for each biological replicate. The samples were fixed, permeabilized, and incubated with Alexa Fluor 488-labeled anti-Vg (42 (link)), by following a previously described protocol (13 (link), 34 (link)). Three biological replicates were conducted. Images were collected and analyzed using an FV3000 confocal microscope (Olympus, Tokyo, Japan). The acquisition parameters were kept constant within the experiment to allow comparison between resulting signal intensities for control/treated whitefly samples.
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alexa fluor 488
Biopharmaceuticals
DNA Replication
Microscopy, Confocal
RNA, Double-Stranded
Sirolimus
Whiteflies
Woman
Top products related to «Whiteflies»
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More about "Whiteflies"
Whiteflies, also known as Aleyrodidae, are small, winged insects that feed on the sap of plants.
These ubiquitous pests can be found worldwide and pose a significant threat to agricultural crops, causing damage and reducing yields.
With numerous species, each with unique characteristics and behaviors, whiteflies can be challenging to control, as they develop resistance to pesticides and tend to conceal themselves on the underside of leaves.
Effective management of whiteflies often requires a multifaceted approach, combining cultural, biological, and chemical control methods.
Understanding the biology and ecology of these insects is crucial for developing integrated pest management (IPM) plans to protect valuable crops and plants.
Researchers studying whiteflies may utilize various tools and techniques, such as the TRIzol reagent for RNA extraction, the CFX96 Real-Time PCR Detection System for gene expression analysis, and the SYBR Premix Ex Taq II and PrimeScript RT reagent kit for reverse transcription and quantitative PCR.
The SV Total RNA Isolation System can also be employed to isolate high-quality RNA from whitefly samples.
Statistical analysis of whitefly data can be performed using software like SPSS 20.0, which provides a comprehensive suite of tools for data analysis and interpretation.
Additionally, researchers may utilize imaging techniques, such as the LSM 710 confocal microscope, to visualize and study the morphology and behavior of whiteflies.
By leveraging the insights gained from the MeSH term description and the Metadescription, researchers can effectively optimize their whitefly studies, enhance reproducibility, and discover the most suitable protocols and products, thanks to the AI-driven capabilities of platforms like PubCompare.ai.
These ubiquitous pests can be found worldwide and pose a significant threat to agricultural crops, causing damage and reducing yields.
With numerous species, each with unique characteristics and behaviors, whiteflies can be challenging to control, as they develop resistance to pesticides and tend to conceal themselves on the underside of leaves.
Effective management of whiteflies often requires a multifaceted approach, combining cultural, biological, and chemical control methods.
Understanding the biology and ecology of these insects is crucial for developing integrated pest management (IPM) plans to protect valuable crops and plants.
Researchers studying whiteflies may utilize various tools and techniques, such as the TRIzol reagent for RNA extraction, the CFX96 Real-Time PCR Detection System for gene expression analysis, and the SYBR Premix Ex Taq II and PrimeScript RT reagent kit for reverse transcription and quantitative PCR.
The SV Total RNA Isolation System can also be employed to isolate high-quality RNA from whitefly samples.
Statistical analysis of whitefly data can be performed using software like SPSS 20.0, which provides a comprehensive suite of tools for data analysis and interpretation.
Additionally, researchers may utilize imaging techniques, such as the LSM 710 confocal microscope, to visualize and study the morphology and behavior of whiteflies.
By leveraging the insights gained from the MeSH term description and the Metadescription, researchers can effectively optimize their whitefly studies, enhance reproducibility, and discover the most suitable protocols and products, thanks to the AI-driven capabilities of platforms like PubCompare.ai.