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Coffea arabica

Coffea arabica, also known as Arabian coffee or Java coffee, is a species of coffee plant that is widely cultivated for its high-quality beans.
This evergreen shrub or small tree is native to the highlands of Ethiopia and Sudan, and is one of the most widely-grown coffee species globally.
Coffea arabica beans are prized for their distinctive flavor profile, which is often described as smooth, sweet, and complex.
This species is an important commercial crop, contributing significantly to the global coffee industry.
Researchers studying Coffea arabica may utilize PubCompare.ai's AI-driven tools to optimize their research process, enhance reproducibility, and identify the most effective methods and products from the literature, preprints, and patents.

Most cited protocols related to «Coffea arabica»

The experiments were conducted in the laboratory of Entomology and Agricultural Zoology of the University of Thessaly, Greece, during the autumn-spring of 2005–2006 at 25 ± 1 °C, 65 ± 5% r.h., and L14:D10 photoperiod, with the photophase starting at 07:00 hours. Light was provided by daylight fluorescent tubes with the intensity inside the test cages ranging from 1500 to 2000 lux.
We tested four medfly populations, originating from Brazil [Petrolina (lat: − 9.40, lon: − 40.49, host: Psidium guajava L. (Myrtaceae)], Portugal [Madeira (lat: 32.74, lon: − 16.98), host: Prunus persica (L.) Batsch (Rosaceae)], Kenya [Nairobi (lat: − 1.27, lon: 36.80), host: Coffea arabica L. (Rubiaceae)] and Greece [Chios (lat: 38.47, lon: 25.99), host: Citrus aurantium L.(Rutaceae)]. Pupae retrieved from field-infested fruits were transported by a courier agency to our laboratory. Because host fruit species may affect several biological parameters of the medfly (Krainacker et al., 1987 ), we reared all four populations for one generation under identical lab conditions and used the F1 progeny in our experiments. Rearing of wild flies was done by keeping adults in groups of about 100 individuals in wooden, wire-screened cages (30 × 30 × 30 cm) provided with water and a standard adult diet (YS) consisting of a mixture of yeast hydrolysate, sugar, and water at a 4:1:5 ratio. Females were allowed to oviposit into 5-cm hollow, red plastic hemispheres (domes) that were artificially punctured with 40–50 evenly distributed holes. Eggs were deposited on the inner surface of the dome. Each dome was fitted into a hole (5-cm in diameter) in the cover of a 5.5-cm plastic Petri dish. Water was placed in the Petri dish in order to maintain humidity levels beneath the dome to an adequate level for female oviposition (Boller, 1985 ). A plastic cup containing 0.5 ml of orange juice was also placed in the Petri dish to stimulate oviposition. Immatures were reared (same density of 50–100 eggs per food amount for all populations) on an artificial diet consisting of 200 g sugar, 200 g brewer’s yeast, 100 g soybean flour, 4 g salt mixture, 16 g ascorbic acid, 16 g citric acid, 3 g sodium propionate, and 1 l water (Boller, 1985 ).
Publication 2008
Adult Ascorbic Acid Biopharmaceuticals Carbohydrates Ceratitis capitata Citric Acid Citrus aurantium Coffea arabica Diet Diptera Eggs Females Food Fruit Humidity Hyperostosis, Diffuse Idiopathic Skeletal Light Myrtaceae Oviposition Population Group Prunus persica Psidium guajava Pupa Rosaceae Rubiaceae Rutaceae Saccharomyces cerevisiae Sodium Chloride sodium propionate Soybean Flour Yeast, Dried
Accessions used to design the Coffee8.5K array (12 C. canephora and 5 C. arabica) were chosen to obtain an array for optimized use in mapping and genetic diversity analyses in coffee trees (Table S2).
SNP calling was generated from two Discovery Panels. The C. arabica Discovery Panel included five genotypes whose genome sequences were kindly provided by the Arabica Coffee Genome Consortium (ACGC): the parents of the Arabica mapping population (Ar8 and Ar36B), two cultivated varieties (Mundo Novo and Bourbon) and Et39, which is a spontaneous C. arabica dihaploid, that is with only one set of chromosomes from each subgenome (see Figure 4b). The C. canephora Discovery Panel included 12 genotypes of C. canephora belonging to the six genetic groups (Pégard et al., 2014).
Coffee8.5K array SNP segregation was monitored in the Robusta BP409 X Q121 and the Arabica Ar8 X Ar36B mapping populations (Mapping Panels, Table S2).
To evaluate the transferability and genotyping performance of the Coffee8.5K array, we genotyped a Diversity Panel of six C. eugenioides, the C. arabica dihaploid Et39, 16 wild and cultivated C. arabica and 27 C. canephora accessions representative of the C. canephora diversity groups as previously defined with SSR markers (Gomez et al., 2009; Pégard et al., 2014) (Table S2), as well as uncharacterized individuals from Angola and DRC.
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Publication 2019
Chromosomes Coffea arabica Coffee Genetic Diversity Genome Parent Trees
To verify the taxonomic placement of cranberry, two plastid (atpB, rbcL) and one mitochondrial (matR) gene sequences were concatenated and aligned, using MUSCLE (EMBL-EBI), with those of 18 other plant species including Rosids, Asterids, monocots and a basal eudicot: Arabidopsis thaliana (thale cress), Carica papaya (papaya), Citrus sinensis (orange), Coffea arabica (coffee), Cucumis sativus (cucumber), Daucus carota (carrot), Glycine max (soybean), Gossypium hirsutum (cotton), Helianthus annuus (sunflower), Lotus japonicus, Nicotiana tabacum (tobacco), Oenothera elata (evening primrose), Ranunculus macranthus (large buttercup), Spinacia oleracea (spinach), Theobroma cacao (cocoa), Vaccinium macrocarpon (American cranberry), Vigna radiata (mung bean), Vitis vinifera (grape) and Zea mays (corn). The resulting dataset was a 3,596 long nucleotide alignment. The optimal model of DNA substitution for the three genes was the Generalized time reversible model with Gamma distributed among site rate variation and a proportion of invariant sites (GTR + Γ + i) calculated using Modeltest software [102 (link)]. A maximum likelihood (RAxML) tree was constructed and the results of 100 bootstrap replicates were used to determine the phylogeny.
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Publication 2014
Arabidopsis thalianas Cacao Carica papaya Carrots Citrus sinensis Coffea arabica Coffee Cranberry Cucumis Cucumis sativus Daucus carota Gamma Rays Genes Genes, Mitochondrial Gossypium Grapes Helianthus annuus Lotus japonicus Muscle Tissue Nicotiana Nicotiana tabacum Nucleotides Oenothera Oenothera biennis Plants Plastids Ranunculus Soybeans Spinach Spinacia oleracea Trees Vaccinium macrocarpon Vigna radiata Vitis Zea mays

Trichoderma strains were independently received by the Kubicek and Samuels labs from colleagues in several countries or from personal collecting. Hypocrea teleomorphs of Trichoderma species were collected in Australia, New Zealand, Sri Lanka, Canary Islands (La Palma) and Isle de la Réunion in the Indian Ocean; cultures derived from these collections were made by isolating solitary ascospores using a micromanipulator or a platinum needle on cornmeal agar (Difco or Sigma) + 2% dextrose (CMD). Strains described below as T. flagellatum were isolated from surface sterilized roots of Coffea arabica and T. solani originated in surface sterilized potato tubers.
Growth rates were determined on PDA (potato dextrose agar, Difco) and SNA (Nirenberg 1976 , without filter paper) at 15, 20, 25, 30 and 35°C in darkness (with intermittent light when they were measured at intervals of 24 h). To prepare inoculum, cultures were incubated at 25°C for a few days on cornmeal agar (Difco) with 2% glucose (CMD) or on SNA. The inoculum was placed at 10–15 mm distance from the edge of the plate. It should be noted that different brands of PDA can give different colony characteristics (Jaklitsch 2009 (link)). Measurements were made at intervals of 24 h until 96 h. Colony characters were taken from colonies incubated on PDA and SNA at 25°C with alternating cool white fluorescent light and darkness (12 h/12 h) after 7–10 day; these conditions are referred to in descriptions as ‘under light’. Typically there is little intra-species variation. Measurements are reported as mean plus and minus standard deviation with extremes in brackets; the 95% confidence of the means (95% ci) is reported in cases of multiple collections for a species. Statistics were computed using Systat 10© (Wilkinson 2000 ). Continuous measurements (dimensions of conidia, phialides etc.) and appearance of conidiophores and conidial pustules are determined from colonies incubated 7–10 day at 25°C under light conditions described above, usually from SNA but when conidia do not form on SNA, characters are taken from CMD, less frequently on cornmeal agar without added glucose. Thirty units of each character are measured from all available cultures of each species, except where noted. In some images Helicon Focus (http://www.heliconsoft.com/heliconfocus.html) was used to provide depth of field.
The present work derives from the phylogenetic analysis of Druzhinina et al. (2012 ). To facilitate the location of species in the phylogenetic context a modified version of their phylogenetic tree is given as Fig. 1. Details on methods used to produce the tree, strains and their GenBank numbers are provided in that work. Representative cultures of all species are deposited in Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands (CBS) or the American Type Culture Collection, Manassas, VA, U.S.A. (ATCC).

Bayesian phylogram obtained from the concatenated alignment of tef1, cal1 and chi18-5 loci. See Druzhinina et al. (2012 ) for details

Publication 2012
Agar Arecaceae Character Coffea arabica Conidia Darkness Glucose Light Needles Plant Roots Plant Tubers Platinum Solanum tuberosum Strains Trees Trichoderma
All chemicals used were of analytical grade
and used as received without any further purification. All solutions
were prepared with deionized water of resistivity not less than 18.2
MΩ cm from a Milli-Q Integral 3 (Merck Millipore, U.K.). Post-industrial
waste poly(lactic acid) (PI-PLA), from coffee machine pods, was purchased
from Gianeco (Turin, Italy). Hexaamineruthenium (III) chloride (RuHex,
98%), ferrocenemethanol (97%), potassium chloride (>99%), caffeine
(99%), sodium hydroxide (>98%), phosphate-buffered saline tablets
(pH = 7.4), hydrochloric acid, and poly(ethylene succinate) (PES,
MW: 10 000) were purchased from Merck (Gillingham, U.K.). Carbon
black (Super P, >99%) was purchased from Fisher Scientific (Loughborough,
U.K.). Heat-set inserts were purchased from McMaster-Carr (IL). The
commercial conductive PLA/carbon black filament (ProtoPasta, Vancouver,
Canada) was purchased from Farnell (Leeds, U.K.). Real samples of
Earl Grey Fine Tea (96% Black Tea) and Coffee Bags (100% Arabica Coffee)
were purchased from a local convenience store.
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Publication 2023
Caffeine Camellia sinenses Carbon Black Chlorides Coffea arabica Coffee Cytoskeletal Filaments Electric Conductivity ferrocenemethanol Hydrochloric acid Phosphates poly(ethylene succinate) poly(lactic acid) Potassium Chloride Saline Solution Sodium Hydroxide

Most recents protocols related to «Coffea arabica»

The experiment was performed through three consecutive years (harvests of 2017/2018, 2018/2019, and 2019/2020) in a commercial production system of coffee located in the municipality of Santo Antônio do Amparo-MG, Brazil (20°53′26.04″ S and 44°52′04.14″ W and mean altitude of 1100 m). The plantation of Coffea arabica L., cultivar Catuaí Vermelho IAC 99, initiated in 2012 and spaced at 3.40 m × 0.65 m, is planted on a clayey Dystrophic Red Latosol-Latossolo Vermelho distrófico (Oxysol) [35 ].
Before the experiment, soil samples were collected for chemical attributes and texture analyses (Table 4). Samples from the 0–80 cm layer of soil were collected to assess K and Cl stocks. Undisturbed soil samples were taken to assess bulk density (BD). For depths over 5 cm, multiple samples were taken followed by the weighted average of the BD values. After determining K and Cl concentrations (mg kg−1), the values were multiplied by the BD to transform them into kg ha−1.
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Publication 2023
Clay Coffea arabica Coffee Dietary Fiber
Ground green coffee beans (Coffea arabica L.) were procured from a local company (All For Nature, Timișoara, Timiș, Romania).
Folin-Ciocâlteu reagent, sodium carbonate (Na2CO3), Aluminum chloride (AlCl3), ABTS+ (diammonium 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonate), DPPH (2,2-Diphenyl-1-(2,4,6-trinitrophenyl)hydrazyl), TPTZ (2,4,6-Tris(2-pyridyl)-s-triazine), indomethacin, carboxymethylcellulose, o-phthalaldehyde, Lambda carrageenan type IV were purchased from Sigma–Aldrich (Taufkirchen, Germany). 2-thiobarbituric acid and Bradford reagent were acquired from Merck KGaA (Darmstadt, Germany) and ELISA cytokines tests (TNF-α and IL-6, respectively) were obtained from Elabscience (Houston, TX, USA). Bradford total protein assay was purchased from Biorad (Hercules, CA, USA). All analytical grade, HPLC reagents and standards were acquired from Sigma–Aldrich (Taufkirchen, Germany) and Decorias (Rediu, Romania).
The following equipment was used for the present study: SER 148 solvent extraction unit (VELP® Scientifica, Usmate Velate, Italy), T 50 ULTRA-TURRAX® disperser (IKA®-Werke GmbH & Co. KG, Staufen, Germany), Sonic-3 ultrasonic bath (Polisonic, Warsaw, Poland), refrigerated high speed centrifuge Sigma 3-30KS (Sigma Laborzentrifugen GmbH, Osterode am Harz, Germany), Specord 200 Plus spectrophotometer (Analytik Jena, Jena, Germany), Agilent 1100 Series HPLC Value System coupled with an Agilent 1100 mass spectrometer (LC/MSD Ion Trap SL) (Agilent Technologies, Santa Clara, CA, USA), Bioblock Scientific 94200 rotary evaporator (Heidolph Instruments GmbH & Co. KG, Schwabach, Germany), vacuum controller HS-0245 (Hahnshin Scientific Co., Tongjin-eup, Gimpo-si, Gyeonggi-do, South Korea), Brinkman Polytron homogenizer (Kinematica AG, Littau-Luzern, Switzerland).
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Publication 2023
2,2'-azino-di-(3-ethylbenzothiazoline)-6-sulfonic acid Alkanesulfonates Aluminum Chloride Bath Biological Assay Carboxymethylcellulose Coffea arabica Coffee Cytokine diphenyl Enzyme-Linked Immunosorbent Assay folin High-Performance Liquid Chromatographies Indomethacin lambda-Carrageenan o-Phthalaldehyde Proteins sodium carbonate Solvents thiobarbituric acid Triazines Tromethamine Tumor Necrosis Factor-alpha Ultrasonics Vacuum
The study was carried out in four localities in the San Martín region (Figure 1), an area located in the northern jungle of the Peruvian territory between 305 and 900 m.a.s.l. (Table A1). The average temperature in these localities ranges between 26 and 27.5 °C (minimum annual average ranges from 20 to 22 °C, while maximum ranges from 32 to 33 °C), while annual rainfall is between 1502 and 2680 mm [41 ]. These conditions allow for the growth of various cultivable species, such as sacha inchi. This crop is usually established on lands that have been previously cultivated with crops such as cocoa (Theobroma cacao) or coffee (Coffea arabica) in areas where the soil has lost its productive capacity. In addition, due to its rusticity, sacha inchi plantations are managed in traditional ways and are commonly associated with other crops such as banana (Musa sp.), papaya (Carica papaya), and guaba (Inga feuilleei).
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Publication 2023
Banana Cacao Carica papaya Cocoa Powder Coffea arabica Coffee Crop, Avian Musa
Commercial Luwak coffee was purchased from Bogor Indonesia as 100% pure, coarsely powdered coffee, ca. 2–4 mm in size, which has been heavily roasted and freeze-dried. It was compared to samples from two coffee-producing species: C. arabica, commonly known as arabica coffee, roasted arabica coffee (RCA), and green arabica coffee (GCA); the other is C. canephora var. robusta (known as green robusta coffee (GCC) or roasted robusta coffee (RCC)), collected from the Mina Gerais University Arboretum, Brazil, as entire seeds that were further powdered in a mortar using liquid nitrogen. Analysis was performed via NMR spectroscopy, ultra-performance liquid chromatography coupled with mass spectroscopy (UPLC-MS), and solid-phase microextraction coupled with the gas chromatography-mass spectrometry method (SPME/GC–MS). Samples subjected to SPME/GC-MS included Luwak coffee, roasted coffee, and roasted coffee blended with cardamom to comparatively evaluate the aroma profile. The NMR fingerprinting of coffee extracts was also conducted.
Freeze-dried coffee seeds were prepared for NMR analysis following the same protocol as used for herbal extracts [15 (link),16 (link),17 (link)]; about 150 mg of each coffee powder (n = 3) was homogenized with 6 mL of 100% MeOH containing 10 µg/mL umbelliferone (an internal standard for relative quantification using LC-MS), using an Ultra-Turrax (IKA, Staufen, Germany) at 11,000 rpm for 5 × 60 s, with 1-minute break intervals. The extract was vortexed for 1 min, centrifuged at 3000× g for 30 min, and then filtered. Afterward, 4 mL of the supernatant was aliquoted for NMR analysis and then dried in a stream of nitrogen. The dried extract was re-suspended with 800 μL of 100% methanol-d4, containing HMDS that has been adjusted to a final concentration of 0.94 mM. After centrifugation (13,000× g for 1 min), the supernatant was transferred to a 5-millimeter NMR tube for measurement. For the LC-MS analysis, 1 mL of the sample was aliquoted and placed on a 500 mg Octadecylsilane (C18) cartridge that was preconditioned with methanol. The samples were then eluted using 3 × 0.5 mL methanol; the eluent was then evaporated under a nitrogen stream and the obtained dry residue was resuspended in 1 mL of 100% methanol.
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Publication 2023
7-hydroxycoumarin Centrifugation Coffea arabica Coffee Elettaria cardamomum Freezing Gas Chromatography-Mass Spectrometry Liquid Chromatography Mass Spectrometry Methanol Nitrogen octadecylsilane Oxymetholone Plant Embryos Powder Scents Solid Phase Microextraction Spectroscopy, Nuclear Magnetic Resonance

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Publication 2023
chemical composition Coffea arabica Coffee Convection Electricity Figs Germination Powder Specimen Handling

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Chlorogenic acid is a compound found in various plants, including coffee beans. It is a type of polyphenol and is commonly used in laboratory settings for research purposes.
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Gallic acid is a naturally occurring organic compound that can be used as a laboratory reagent. It is a white to light tan crystalline solid with the chemical formula C6H2(OH)3COOH. Gallic acid is commonly used in various analytical and research applications.
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Formic acid is a colorless, pungent-smelling liquid chemical compound. It is the simplest carboxylic acid, with the chemical formula HCOOH. Formic acid is widely used in various industrial and laboratory applications.
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Caffeic acid is a phenolic compound commonly found in various plants. It serves as a laboratory standard for the identification and quantification of similar phenolic compounds using analytical techniques such as high-performance liquid chromatography (HPLC) and spectrophotometry.
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The Milli-Q system is a water purification system designed to produce high-quality ultrapure water. It utilizes a multi-stage filtration process to remove impurities, ions, and organic matter from the input water, resulting in water that meets the strict standards required for various laboratory applications.
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Whatman No. 1 filter paper is a general-purpose cellulose-based filter paper used for a variety of laboratory filtration applications. It is designed to provide reliable and consistent filtration performance.
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Caffeine is a naturally occurring stimulant compound that can be extracted and purified for use in various laboratory applications. It functions as a central nervous system stimulant, inhibiting the action of adenosine receptors in the brain.
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The Folin-Ciocalteu reagent is a colorimetric reagent used for the quantitative determination of phenolic compounds. It is a mixture of phosphomolybdic and phosphotungstic acid complexes that undergo a color change when reduced by phenolic compounds.
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Shikimic acid is an organic compound used as a raw material in the production of certain pharmaceutical drugs. It is a naturally occurring compound found in various plants, including star anise, and is a key intermediate in the shikimate pathway, a metabolic route used by bacteria, fungi, and plants to produce aromatic compounds.
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Acetonitrile is a colorless, volatile, flammable liquid. It is a commonly used solvent in various analytical and chemical applications, including liquid chromatography, gas chromatography, and other laboratory procedures. Acetonitrile is known for its high polarity and ability to dissolve a wide range of organic compounds.

More about "Coffea arabica"

Discover the fascinating world of Coffea arabica, also known as Arabian coffee or Java coffee.
This evergreen shrub or small tree is native to the highlands of Ethiopia and Sudan, and is one of the most widely-grown coffee species globally.
The beans of Coffea arabica are prized for their distinctive flavor profile, often described as smooth, sweet, and complex.
As a key commercial crop, Coffea arabica plays a significant role in the global coffee industry.
Researchers studying this species may utilize PubCompare.ai's AI-driven tools to optimize their research process, enhance reproducibility, and identify the most effective methods and products from the literature, preprints, and patents.
Beyond the coffee bean itself, Coffea arabica contains a variety of valuable compounds, including chlorogenic acid, gallic acid, formic acid, caffeic acid, and shikimic acid.
These compounds contribute to the unique flavor and health benefits of Coffea arabica.
To extract and analyze these compounds, researchers may employ techniques such as using a Milli-Q system for water purification and Whatman No. 1 filter paper for filtration.
The quantification of key compounds like caffeine and polyphenols can be carried out using the Folin-Ciocalteu reagent.
By leveraging the insights and tools available, researchers can enhance their Coffea arabica studies, leading to improved research outcomes and a deeper understanding of this remarkable coffee species.