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Litchi chinensis

Litchi chinensis, also known as the lychee, is a subtropical fruit tree native to southern China.
It is prized for its sweet, juicy, and fragrant fruit.
Litchi chinensis research is crucial for understanding the biology, cultivation, and potential medicinal properties of this important crop.
PubCompare.ai is an AI-driven platform that can help streamline Litchi chinensis research by providing access to the latest protocols from literature, preprints, and patents.
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Most cited protocols related to «Litchi chinensis»

Four young tissues, buds, leaves, cambium scrapings and roots, were collected as described previously.[1 (link)] Flowers at full bloom, fruits at flower fall, five-centimeters-high seedlings and young shoot segments without bark below the buds were also collected. The other recalcitrant plant tissues used in this study are listed in Table 2. After collection, all plant materials were immediately frozen in liquid nitrogen and stored at −80 °C until needed.

Quality of RNA extracted from seven tissues.

 NanoDrop 1000a
2100 Bioanalyzerb
Plant tissueA260/A280A260/A230ng/μLRINcrRNA ratio (28S/18S)
Bud2.14 ± 0.042.12 ± 0.011014 ± 1679.42.2
Leaf2.16 ± 0.022.21 ± 0.212238 ± 4308.71.5
Cambium region2.13 ± 0.012.12 ± 0.121119 ± 2149.51.9
Root2.14 ± 0.102.13 ± 0.14945 ± 2318.92.2
Shoot segment2.14 ± 0.032.17 ± 0.09723 ± 359.62.0
Flower2.14 ± 0.012.06 ± 0.23260 ± 79.22.4
Fruit2.19 ± 0.002.25 ± 0.051044 ± 1009.12.4
Seedling2.17 ± 0.012.16 ± 0.171331 ± 1469.12.7

aResults represent the means ± standard deviation of three samples.

bThe results of one biological replicate are shown.

cRIN – RNA integrity number.

Purity and yield of total RNA extracted from recalcitrant plant tissues.

Plant speciesTissuesA260/A280A260/A230Concentration (ng/μL)
Camellia sinensis L. (tea) [31 ]Bud2.121.983032
 Young leaf2.22.053519
 Fully expanded leaf2.181.93736
     
Eriobotrya japonica Lindl. (loquat) [32 (link)]Terminal bud2.191.95670
 Young leaf2.162.04735
 Adult leaf2.152.18637
     
Pinus taeda L. (loblolly pine) [33 ]Young needle1.861.94296
 Adult needle2.011.90273
     
Litchi chinensis Sonn. (lychee) [34 (link)]Young leaf2.192.051924*
 Adult leaf2.182.181180
     
Rosa chinensis (rose) [32 (link)]Young petal1.821.97445
 Adult petal1.801.95388
     
Taxus media (taxus) [35 (link)]Young leaf2.132.143150*
 Adult leaf2.042.182873
     
Ginkgo biloba L. (ginkgo) [35 (link)]Young leaf2.011.93447
 Adult leaf2.162.12460
     
Opuntia ficus-indica L. (cactus) [36 ]Cladode2.051.95255*
     
Aloe barbadensis Mill. (curacao aloe) [36 ]Leaf2.182.21277*

Note: *The yield given by the simple method was higher than that in the corresponding reference described by p < 0.05.

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Publication 2014
Adult Aloe Aloe vera Biopharmaceuticals Cactaceae Cambium Camellia sinenses DNA Replication Eriobotrya Freezing Fruit Ginkgo biloba Kidney Cortex Litchi chinensis Loquats Nitrogen Opuntia ficus-indica Pinus Pinus taeda Plant Roots Plants Seedlings Taxus Tissues Young Adult
Total RNA from the pericarp of litchi fruits was extracted as described above and cDNA was synthesized from total RNA (2 μg) using oligo (dT) primers and M-MLV reverse transcriptase, according to the manufacturer’s instructions (Invitrogen, USA) in a 20 μl total volume. The specific real-time PCR primers were designed using the BatchPrimer3 program [69 (link)] (Additional file 13). Transcript levels were analyzed by quantitative real-time PCR using the THUNDERBIRD Real-Time PCR Mix (TOYOBO, Japan) and an ABI 7500 Real-Time PCR System (Applied Biosystems, USA) according to the manufacturers’ instructions [13 (link)]. All biological replicates were analyzed in triplicate. Real-time PCR reactions were normalized to the Ct values for litchi LcActin (HQ615689) and LcGAPDH (JF759907). The relative expression levels of the target genes were calculated using the formula 2-△△CT.
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Publication 2015
Biopharmaceuticals DNA, Complementary Fruit Gene Expression Litchi chinensis Oligonucleotide Primers Oligonucleotides Real-Time Polymerase Chain Reaction RNA-Directed DNA Polymerase
First-strand cDNA was generated from 1 μg total RNA isolated from the rudimentary leaves using the superscript first-strand synthesis system (Invitrogen, USA). Primers for quantitative reverse transcription PCR (qRT-PCR) were designed using Primer Premier 5.0 software (Premier, Canada) and synthesized by Sangon Biotech (Shanghai) Co., Ltd. The litchi homologue Actin (GenBank accession number:HQ588865.1) was selected as reference. All the primers are shown in Additional file 8. qRT-PCR was performed on a Bio-Rad iQ5 Optical System Real Time PCR System (Bio-Rad, USA) using a SYBR Green based PCR assay. Each reaction mixture was 20 μL containing 6 μL of diluted first-strand cDNAs and 250 nM of each primer, SYBR Green PCR Master Mix (TaKaRa, Japan) 10 μL. The qPCRs were run as follows: 50°C for 2 min, 95°C for 10 min, followed by 40 cycles of 95°C for 30 s, 56°C for 30 s, and 72°C for 30 s in 96-well optical reaction plates (Bio-rad, USA). Each qRT-PCR analysis was performed in triplicate. Expression levels of the tested reference genes were determined by CT values and calculated by 2-△△Ct.
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Publication 2014
Actins Anabolism Biological Assay DNA, Complementary Gene Expression Litchi chinensis Oligonucleotide Primers Real-Time Polymerase Chain Reaction Reverse Transcription SYBR Green I
Total RNA from the pericarps of litchi and tobacco was extracted and first strand cDNA was synthesized as described above. The transcription levels of both the litchi and tobacco anthocyanin biosynthetic genes were analyzed using quantitative real-time PCR (qRT-PCR),) with THUNDERBIRD qPCR Mix (TOYOBO, Japan) and ABI 7500 Real-Time PCR Systems (Applied Biosystems, USA) according to the manufacturers' instructions. The primers are shown in Table S1. Each reaction (20 μL final volume,) contained 9.96 μL 2×SYBR® qPCR Mix (TOYOBO), 0.04 μL 50×ROX reference dye, 1.0 μL of each the forward and reverse primers (0.25 μM), 2.0 μL of the cDNA template (corresponding to 50.0 ng of total RNA), and 7.0 μL of RNase-free water. The reaction mixtures were heated to 95°C for 30 s, followed by 40 cycles at 95°C for 10 s, 56°C for 15 s, and 72°C for 35 s. A melting curve was generated for each sample at the end of each run to ensure the purity of the amplified products. The specific qRT-PCR primers were designed using a Primer 5.0 program (PREMIER Biosoft International, Canada) (Table 2). Using these gene-specific primers, each assay amplified a single product of the correct size and demonstrated an acceptable PCR efficiency (approximately 90%). qRT-PCR reactions were normalized to the Ct values for LcActin (HQ615689) and NtACT (GQ281246) in litchi and tobacco, respectively. The relative expression levels of the target genes were calculated using the formula 2−ΔΔCT[61] (link). All biological replicates were measured in triplicate.
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Publication 2014
Anabolism Anthocyanins Biological Assay Biopharmaceuticals DNA, Complementary Gene Expression Genes Litchi chinensis Nicotiana Oligonucleotide Primers Real-Time Polymerase Chain Reaction Ribonuclease 7 Transcription, Genetic
Longitudinal face-to-face interviews were conducted by trained interviewers three times during the follow-up period: during the first trimester (≤12 weeks), the second trimester (13 to 27 weeks) and the last trimester (≥28 weeks) of gestation. Each subject was asked to complete a 3-day food record (2 weekdays and 1 weekend day), which was reported in a face-to-face interview on the first day and by telephone interview 2 days later. The participants were required to provide information on the types of food they had eaten each day and how much of each type they had eaten. A commonly used portion size was specified for each food type (e.g. a glass, a slice or a unit such as one apple or banana). To reduce measurement error, photographs of normal portions were provided to help the subjects to estimate and record their food consumption in the face-to-face interviews. The types and amounts of food were classified and coded based on the Chinese Food Composition Table40 . The average daily consumption of all fresh fruit items reported by each participant was summed to calculate the total consumption of fresh fruit during the second trimester of pregnancy.
Individual fruits were categorised into three groups based on their GI values: low was defined as GI ≤ 55, moderate as GI > 55 & <70 and high as GI ≥ 70. Because the consumption of fruit in the moderate- and high-GI groups was too small to be analysed separately, fruits with moderate and high GI values were merged into a single group, defined as GI > 5541 . Of the fruit consumed frequently by the participants, apples, pears, oranges, tangerines, grapefruits, peaches/nectarines, apricots, plums and strawberries were defined as low-GI fruit, and bananas, cantaloupes, melons, watermelons, pineapples and lychees were defined as moderate- and high-GI fruit41 . In addition, following Lai et al., the above fruit types were divided into six subgroups according to their polyphenol content using the Phenol-Explorer database. These subgroups comprised pome fruit, citrus fruit, berries, drupe fruit, gourd fruit and tropical fruit (Table 5)17 (link)32 (link). Tropical fruit was defined as fruit cultivated in the tropics, such as bananas, mangoes and persimmons.
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Publication 2017
Apricot Banana Berries Cantaloupes Chinese Citrus paradisi Citrus reticulata Diospyros Eating Face Food Fruit Fruit, Citrus Interviewers Litchi chinensis Mango Melons Peach Pears Phenols Pineapple Plum Polyphenols Pregnancy Strawberries Watermelon

Most recents protocols related to «Litchi chinensis»

Flavonoids were extracted from the seeds of litchi for LC-MS/MS analysis. The details of the extraction of the flavonoids from litchi seeds and the procedure of LC-MS/MS analysis for the identification and structural confirmation of the flavonoids can be found in the Supplementary Material.
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Publication 2023
Flavonoids Litchi chinensis Plant Embryos Tandem Mass Spectrometry
In order to obtain the histological images of litchi seed tissue sections, a slightly modified hematoxylin and eosin staining method was carried out based on an established procedure (Casadonte and Caprioli, 2011 (link)). Briefly, the tissue sections were washed in a series of ethanol solutions (100%, 95%, 80%, and 70% aqueous ethanol; 15 s/wash). After 10-s ultrapure water washing, tissue sections were stained with hematoxylin solution for 2 min and then washed with ultrapure water and 70% and 95% aqueous ethanol for 30 s each. The eosin solution was applied for another 1 min. Then, all tissue sections were washed with 95% and 100% ethanol and xylene for 30-s dehydration.
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Publication 2023
Dehydration Eosin Ethanol Litchi chinensis Staining Tissues Xylene
For tissue sectioning, a Leica CM1860 cryostat (Leica Microsystems Inc., Wetzlar, Germany) was used. The frozen litchi seeds were cryo-sectioned into 12-μm-thick slices at a temperature of −20°C, and then the cryo-sectioned samples were thaw-mounted instantly on the conductive indium tin oxide films of microscope glass slides purchased from Bruker Daltonics (Bremen, Germany) (Figures 1A, B).
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Publication 2023
Electric Conductivity Frozen Semen indium tin oxide Litchi chinensis Microscopy Tissues
After being air-dried, the serial litchi seed tissue sections were used for MALDI matrix coating (Figure 1C). A 2-MBT matrix solution was prepared at an optimal concentration of 15 mg/ml and dissolved in methanol/water/TFA (80:20:0.2, v/v/v). Air-dried tissue sections were coated with the 2-MBT matrix solution by a GET-Sprayer (III) (HIT Co., Ltd, Beijing, China). Briefly, the 2-MBT matrix solution 15 cycles (5 s spray, 10 s incubation, and 20 s drying time) was sprayed on the surface of the tissue sections to pre-seed a thin layer of the 2-MBT matrix. After the tissue sections were completely air-dried in a vented fume hood, the matrix solution was evenly sprayed for 50 more of the same cycles.
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Publication 2023
Litchi chinensis Methanol Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization Tissues
Fresh litchi fruit was collected from the Yongfuda litchi orchard (Haikou, Hainan, China) in June 2022. Haikou is located on Hainan Island in China. It has a typical tropical marine climate and annual sunshine duration of over 2,000 h. The climate is humid, the temperature rises fast, and the average annual precipitation is approximately 260 mm. The Yongfuda litchi orchard is located in a volcanic rock soil planting area. Once harvested, the peel and flesh of the litchi were immediately removed, and the litchi seeds were flash-frozen with liquid nitrogen by slow immersion to prevent seed shattering and endogenous compound changes. The commonly used MALDI matrix, 2-mercaptobenzothiazole (2-MBT), was obtained from Sigma-Aldrich (St. Louis, MO, USA). Amino acid and oligopeptide standards, including His, Gly-Gly-Leu (tripeptide), Ala-His-Lys (tripeptide), Leu-Leu-Tyr (tripeptide), and Arg-Gly-Asp-dTyr-Lys (pentapeptide), were purchased from Bankpeptide Biological Technology Co., Ltd. (Hefei, Anhui, China). Trifluoroacetic acid (TFA) and liquid chromatography–mass spectrometry (LC-MS)-grade methanol and ethanol were obtained from Merck & Co., Inc. (Darmstadt, Germany). Ultrapure water in the whole process of the experiments was prepared using a Millipore Milli-Q system (Bedford, MA, USA). All other reagents and chemicals were purchased from Merck, unless otherwise noted.
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Publication 2023
2-mercaptobenzothiazole Amino Acids arginyl-glycyl-aspartic acid Biopharmaceuticals Climate Ethanol Freezing Fruit glycyl-glycyl-leucine leucyltyrosine Liquid Chromatography Litchi chinensis Marines Mass Spectrometry Methanol Nitrogen Oligopeptides Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization Submersion Sunlight Trifluoroacetic Acid Tropical Climate

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More about "Litchi chinensis"

Litchi, also known as the lychee, is a prized subtropical fruit native to southern China.
This sweet, juicy, and fragrant fruit is the focus of crucial research to understand its biology, cultivation, and potential medicinal properties.
PubCompare.ai, an AI-driven platform, can streamline Litchi chinensis research by providing access to the latest protocols from literature, preprints, and patents.
The ABI 7500 Real-Time PCR System and CFX96 real-time PCR system are powerful tools used in Litchi chinensis research to study gene expression and other molecular processes.
SYBR Premix Ex Taq II, a versatile real-time PCR reagent, is often employed in these experiments.
Acetonitrile, a common organic solvent, may be used for sample preparation and extraction.
Researchers may also utilize 96-well optical reaction plates to conduct high-throughput experiments.
The HiSeq platform, a next-generation sequencing technology, can be employed for in-depth genomic and transcriptomic analyses of Litchi chinensis.
To study RNA expression, researchers may use M-MLV reverse transcriptase and the All-In-One DNA/RNA Mini-preps Kit or the TransScript One-Step gDNA Removal and cDNA Synthesis SuperMix kit.
TRIzol reagent is a popular choice for RNA extraction from Litchi chinensis samples.
By leveraging the power of PubCompare.ai and these cutting-edge techniques, scientists can enhance the reproducibility and accuracy of their Litchi chinensis research, leading to a deeper understanding of this important crop and its potential applications.