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Rhizome

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Most cited protocols related to «Rhizome»

As described previously (Lum et al., 2002 (link)), we divided ginseng into its main root (MR), lateral root (LR) and rhizome head (RH) (Figure 1). Different parts were weighed on an electronic scale (0.01 g), and the root mass ratio (RMR) was calculated (g·g−1) (Gregory et al., 1995 (link)). We placed the plant parts on a glass board covered with graph paper to measure their length (0.1 mm) and calculated the specific root length (SRL) (cm·g−1) (Ostonen et al., 2007 (link)). The total length and biomass were determined as the sum of every part. Average values were calculated from 25 samples per developmental stage of F. Ginseng. Relative growth rate (RGR) was measured as the increase in mass per biomass per year and was calculated using the following equation: RGR = (ln W2 − ln W1) / (t2 − t1); where ln = natural logarithm, t1 = time one (in years), t2 = time two (in years), W1 = weight of plant at time one (in grams), W2 = weight of plant at time two (in grams). The phenotypic plasticity index [PPI, (F. Ginseng mean − W. Ginseng mean)/W. Ginseng mean] was calculated for each trait (Caplan and Yeakley, 2013 (link)), which was used to evaluate the morphological difference between F. Ginsengs (in different growth time) and W. Ginseng.
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Publication 2016
Ginseng Head Phenotypic Plasticity Plant Roots Plants Rhizome
GC–MS analyses of leaf and rhizome extracts were carried out using the Perkin-Elmer Clarus 680 system (Perkin-Elmer, Inc. U.S.A) equipped with a fused silica column, packed with Elite-5MS) capillary column (30 m in length × 250 μm in diameter × 0.25 μm in thickness). Pure helium gas (99.99%) was used as the carrier gas at a constant flow rate of 1 mL/min. For GC–MS spectral detection, an electron ionization energy method was adopted with high ionization energy of 70 eV (electron Volts) with 0.2 s of scan time and fragments ranging from 40 to 600 m/z. The injection quantity of 1 μL was used (split ratio 10:1), and the injector temperature was maintained at 250 °C (constant). The column oven temperature was set at 50 °C for 3 min, raised at 10 °C per min up to 280 °C, and final temperature was increased to 300 °C for 10 min. The contents of phytochemicals present in the test samples were identified based on comparison of their retention time (min), peak area, peak height and mass spectral patterns with those spectral database of authentic compounds stored in the National Institute of Standards and Technology (NIST) library60 .
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Publication 2020
Capillaries Electrons Gas Chromatography-Mass Spectrometry Helium Phytochemicals Plant Leaves Radionuclide Imaging Retention (Psychology) Rhizome Silicon Dioxide
UV-Vis spectrophotometrical assays were used to determine the total content of flavonoids (as mg/g quercetin equivalents) [23 (link)], catechins (as mg/g (+)-catechin equivalents) [24 (link)], procyanidins (as mg/g procyanidin B1 equivalents) [25 (link)], phenylpropanoids (as mg/g rosavin equivalents) [26 (link)], gallotannins (as mg/g gallic acid equivalents) [27 (link)], ellagitannins (as mg/g ellagic acid equivalents) [28 (link)], coumarins (as mg/g umbelliferon equivalents) [29 (link)], and anthocyanes (as mg/g cyanidin-3-O-glucoside equivalents) [30 (link)] in dry herbal samples of R. rosea (roots, rhizomes, leaves, flowers, stems). All the analyses were carried out in triplicate and the data were expressed as mean value ± standard deviation (SD).
Antioxidant activity of total extracts and selected compounds was determined using spectrophotometric assays. Trolox was used as a positive control (PC; 10 mg/mL), and water was used as a negative control (NC). Scavenging activity against 2,2-diphenyl-1-picrylhydrazyl radicals (DPPH) was studies as the following assay: 500 μL DPPH (freshly prepared MeOH solution, 100 μg/mL) and 500 μL of Rhodiola rosea extract (freshly prepared 50% MeOH solution, 1–200 μg/mL) or pure compound (freshly prepared MeOH solution, 1–200 μg/mL). Absorbance (520 nm) was measured after 15 min. The DPPH scavenging capacity was calculated using equation: Scavenging capacity (%) = ((A520NC – A520PC) – (A520Sample – A520PC)/(A520NC – A520PC)) × 100, where A520NC is the absorbance of the negative control, A520PC is the absorbance of the positive control, and A520Sample is the absorbance of the sample solution. For studing 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) cation radicals (ABTS+) scavenging capacity ABTS (water solution; 7 mM) reacted with potassium persulphate (water solution; final concentration 2.45 mM) in the dark at 20 °C (12–16 h before use). The ABTS+ solution was diluted with MeOH to an absorbance of 0.70 at 734 nm and equilibrated at 20 °C. Rhodiola rosea extract (500 μL; freshly prepared 50% MeOH solution, 1–200 μg/mL) was mixed with ABTS+ solution (500 μL) and the absorbance was measured at 734 nm after 20 min. The ABTS+ scavenging capacity was calculated using equation: Scavenging capacity (%) = ((A734NC – A734PC) – (A734Sample – A734PC)/(A734NC – A734PC)) × 100, where A734NC is the absorbance of the negative control, A734PC is the absorbance of the positive control, and A734Sample is the absorbance of the sample solution. Superoxide radicals (O2) scavenging capacity was determined using Rhodiola rosea extract (50 μL; freshly prepared solution in Tris-HCl buffer, 0.05 M, pH 8.2; 10–1000 μg/mL) mixed with pyrogallol (50 μL, 6 mM) and Tris-HCl buffer (1 mL). The absorbance was measured at 325 nm after 5 min. The O2•− scavenging capacity was calculated using equation: Scavenging capacity (%) = ((A325NC – A325PC) – (A325Sample – A325PC)/(A325NC – A325PC)) × 100, where A325NC is the absorbance of the negative control, A325PC is the absorbance of the positive control, and A325Sample is the absorbance of the sample solution. To determine hydroxyl radicals (OH) scavenging capacity Rhodiola rosea extract (100 μL; freshly prepared solution in 0.2 M phosphate buffer (pH 7.4; 1–500 μg/mL) mixed with deoxyribose solution in the same buffer (100 μL; 2.8 mM), H2O2 (10 μL; 3.6 mM), FeCl3 (10 μL; 5.0 mM) and EDTANa2 (100 μL; 100 μM). After addition of ascorbic acid (50 μL; 200 μM) the mixture was incubated at 55 °C for 20 min. Finally, 2-thiobarbituric acid (800 μL; 10 mg/mL) and trichloroacetic acid (800 μL; 50 mg/mL) were added and heated at 95 °C for 20 min. The absorbance was measured at 530 nm. The OH scavenging capacity was calculated using equation: Scavenging capacity (%) = ((A530NC – A530PC) – (A530Sample – A530PC)/(A530NC – A530PC)) × 100, where A530NC is the absorbance of the negative control, A530PC is the absorbance of the positive control, and A530Sample is the absorbance of the sample solution. The IC50 value is the effective concentration at which free radicals (DPPH, ABTS+, O2•−, OH) was scavenged by 50%. Values are expressed as mean obtained from five independent experiments. Carotene bleaching assay was performed as described previously using β-carotene as a substrate (Sigma-Aldrich, St. Louis, MO, USA, cat. No. C9750) [31 (link)].
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Publication 2020
2,2'-azino-di-(3-ethylbenzothiazoline)-6-sulfonic acid Antioxidant Activity Ascorbic Acid Biological Assay Buffers Carotene Catechin Coumarins cyanidin 3-O-glucoside Deoxyribose diphenyl Ellagic Acid Ellagitannins Flavonoids Flowers Free Radicals Gallic Acid Gallotannins Hydroxyl Radical Peroxide, Hydrogen Phosphates Plant Roots potassium persulfate procyanidin B1 Procyanidins Pyrogallol Quercetin Rhizome Rhodiola rosea rosavin Spectrophotometry Stem, Plant Sulfonic Acids Superoxides thiobarbituric acid Trichloroacetic Acid Trolox C Tromethamine
BSYSC was produced by Beijing Ya Dong Biological Pharmacy Co., Ltd. (Beijing, China). Validation specimens were deposited at the Brain Disease Laboratory of the School of Traditional Chinese Medicine, Capital Medical University, China. BSYSC was composed of Rehmanniae radix praeparata, Radix Rehmanniae, Radix Polygoni Multiflori, Radix et Rhizoma Rhei, Leonurus japonicas Houtt., Bulbus Fritillariae Thunbergii, Hirudo, Scorpio, Rhiazoma Gastrodiae, Fructus Forsythiae. The proportions of these herbs were 10:10:10:2:10:6:3:2:3:6. Bulbus Fritillariae Thunbergii ground into fine powders. The other nine Chinese herbs were extracted twice with boiling water (2 h per extraction, with a total 18-fold volume of purified water). The solutions were concentrated under reduced pressure at 70°C into powders, which were mixed with powders of Bulbus Fritillariae Thunbergii. The resulting mixture of powders was encapsulated. To ensure the quality and stability of BSYSC, the active ingredients were identified by ultra-performance liquid chromatography-quadrupole-time-of-flight-mass spectrometry (UPLC-QTOF-MS).
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Publication 2015
Biopharmaceuticals Brain Diseases Chinese Fruit Leonurus Liquid Chromatography Mass Spectrometry Plant Bulb Plant Roots Powder Pressure Rhizome scorpio sheng-di-huang
Isolation of endophytes from the 43 plant samples was carried out as described by Strobel et al., [4 (link)] but with minor modifications. Plant samples, which included leaves, stems, roots, rhizomes, flowers, fruits and bark, were washed under running tap water for 10 min followed by immersion in 70% EtOH for 1 min and in NaOCl (2.5% - 5.25%) for 3 min, drained and immersed in 70% EtOH again for 30 sec. Finally, the samples were rinsed with sterile d.H2O. Each plant sample was cut aseptically into 1 cm long segments. The cut surfaces of the segments were placed on petri dishes containing potato dextrose agar (PDA) (Oxoid) supplemented with chlortetracycline HCL (50 μg/ml, Sigma) and streptomycin sulphate (250 μg/ml, Sigma) at 28°C. Pure cultures were then transferred to PDA plates free of antibiotics and maintained in the culture collection of the Collaborative Drug Discovery Research (CDDR) Group, UiTM, Malaysia. For investigations of biological activity, the endophytes were cultivated for 14 days on PDA plates at 28°C.
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Publication 2009
Agar Antibiotics, Antitubercular Biopharmaceuticals Endophytes Ethanol Flowers Fruit Glucose Hydrochloride, Chlortetracycline Hyperostosis, Diffuse Idiopathic Skeletal isolation Kidney Cortex Plant Roots Plants Rhizome Solanum tuberosum Stem, Plant Sterility, Reproductive Streptomycin Sulfate Submersion

Most recents protocols related to «Rhizome»

DHJSD comprised 6 g each of Radix glycyrrhizae, Panax ginseng, Radix achyranthis bidentatae, Eucommiae ulmoidis cortex, Poria cocos, Cortex cinnamomi, Radix paeoniae alba, Radix rehmanniae, Radix angelicae sinensis, Rhizoma chuanxiong, Herba Asari, Radix saposhnikoviae, Radix gentianae macrophyllae, Ramulus loranthi and 9 g of Radix angelicae pubescentis. The above-mentioned herbs were provided by the First Hospital of Wuhan. The specific preparation method of DHJSD has been previously reported [28 (link)]. It was formulated by the Pharmacy Department of the Wuhan First Hospital to contain 1 g/mL of crude drug. The stock solution was cooled at room temperature and stored at 4 °C prior to usage. In subsequent experiments, we diluted the DHJSD stock solution to ultimate contents of 500, 400, 300, 200 and 100 μg/mL, adopting DMEM/F12 medium with 15% fetal bovine serum (FBS).
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Publication 2023
cinnamomi cortex Cortex, Cerebral Panax ginseng Pharmaceutical Preparations Plant Roots radix gentianae macrophyllae Rhizome sheng-di-huang Wolfiporia extensa
Fresh Rhizomes of Rehmannia glutinosa were obtained from Wuzhi County, Henan Province, China (35° 1′23″ north latitude, 113° 18′76″ east longitude) in December 2021. Stachyose (NO. 112031-201701), sucrose (NO.1 11507-202105), raffinose (NO. 190225-201901), and verbascose (NO. 111530-201914) were purchased from China Institute for Food and Drug Control.
Dexamethasone tablets were purchased from Tangshan Longkang Pharmaceutical Co., Ltd.
The lipopolysaccharide (LPS) was purchased from Sigma Company in the United States. The detection kits for TNF-α, IL-6, IL-17, and IL-1β were purchased from Shanghai Enzyme-linked Biotechnology Co., Ltd. Moreover, the detection kits for SOD, MDA, GSH-Px, and CAT were purchased from the Nanjing Jiancheng Bioengineering Research Institute. Additionally, the digestion enzyme test kits were purchased from Beijing SOLEBAR Technology Co., Ltd. All other chemicals, solvents, and reagents were of pure analytical grade.
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Publication 2023
Dexamethasone Digestion Enzymes Food IL17A protein, human Interleukin-1 beta Lipopolysaccharides Pharmaceutical Preparations Raffinose Rehmannia glutinosa Rhizome Solvents stachyose Sucrose Test, Clinical Enzyme Tumor Necrosis Factor-alpha verbascose wuzhi
Fresh Rhizomes of Rehmannia glutinosa were cut into small pieces of 5–10 mm after being washed, added four times the amount of water, and extracted twice at 90°C, at 1 h duration. The two extracts were combined, adding activated carbon (2 g/100 ml) and activated clay (2 g/100 ml) to the extract. It was stirred and decolored at 80°C for 30 min, then centrifuged. The supernatant was passed through 001 × 7 cation exchange resin column (diameter: high = 6:1), D201 type anion exchange resin column (diameter: high = 6:1), D101 macroporous adsorption resin column (diameter: high = 10:1) one by one, sample volume (mL): resin column volume = 1:1.5, flow rate was 500 mL/h. Finally, the macroporous adsorption resin effluent was collected and concentrated and dried at 60°C to get white powder, that is RGO.
The type and content of oligosaccharides in RGO were detected using high-performance liquid chromatography (HPLC) (Agilent1260), configured using a Refractive Index Detector (RID) (13 (link)). The standard reference substances of sucrose, stachyose, raffinose, and mulberry sugar were weighed precisely and prepared with 70% acetonitrile aqueous solution into the standard reference solution with a concentration of 0.5 mg/mL, respectively. The RGO powder was also weighed precisely, and prepared with 70% acetonitrile aqueous solution into the sample solution with a concentration of 1 mg/mL. The chromatographic column was Agilent ZORBOX NH2 (4.6 mm × 250 mm, 5 μm); the mobile phase was acetonitrile: water (7:3); the injection volume was 10 μL, the flow rate was 1.0 mL/min, and the temperature of column incubator was 40°C. The temperature of the detection was 50°C with RID. The types of oligosaccharides in RGO were determined by comparing the HPLC peaks of reference substance with those in RGO, and the content of oligosaccharides was calculated by external standard method.
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Publication 2023
acetonitrile Adsorption Anion Exchange Resins Carbohydrates Cation Exchange Resins Charcoal, Activated Chromatography Clay High-Performance Liquid Chromatographies Morus Oligosaccharides Powder Raffinose Rehmannia glutinosa Resins, Plant Rhizome stachyose Sucrose
The absolute cover of vegetation community and C. filispica in each transect was measured before the trampling. The pictures of each transect were taken and imported into Photoshop 2020, where both the absolute cover of vegetation community and C. filispica were measured using a 5 × 20 grid, which proportionately covered each transect (0.5 m wide, 2 m long) with 100 intersections, each intersection of the grid with vegetation was recorded as a “hit,” and then multiplied by 100 to generate absolute cover values. The responses to damage had been stabilized after 2 weeks (Cole & Bayfield, 1993 ), when the absolute cover was measured again with the same method.
Two weeks after the trampling, morphological traits of C. filispica were measured: The thickness of leaves was measured with a vernier caliper, main veins included; the length, average width, and maximum width of leaves were measured by LI‐COR portable leaf area meter. The plants and surrounding soil plot of 10 × 10 × 10 cm each were excavated, which, owing to the shallow‐rooted situation, nearly contains the whole root system. All 378 individuals of C. filispica were then gently separated from the soil, washed, and sorted by whether they had DRs, after which 177 individuals with DRs were observed under a stereoscopic microscope, and the amount, density, size, color, and hair presence of DRs were recorded. The color of DRs was rated on a 5‐point scale, brightest to darkest (1 = White, 2 = Light yellow, 3 = Tawny, 4 = Dark brown, 5 = Black). The formula of DR density is as follows: total amount of DRs/ the dry weight of roots. Using a LA‐S root analyzer, we measured the total length, surface area, volume, and average diameter of the whole root system of 3 individuals with and without DRs per transect, respectively.
The plants were dried and the average biomass of the aboveground parts (leaves and fruits) and belowground parts (roots and rhizomes) were measured, respectively, after which they were ground up separately to measure the organic carbon (OC), total nitrogen (TN), and total phosphorus (TP) content. OC was determined by the potassium dichromate wet‐oxidation method, TN was determined by the Indophenol blue colorimetric method after digested with H2SO4‐H2O2, and TP was determined by the vanadium molybdate yellow colorimetric method after digested with H2SO4‐H2O2.
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Publication 2023
Carbon Colorimetry Darkness Fruit Hair Indophenol Light Microscopy molybdate Nitrogen Peroxide, Hydrogen Phosphorus Plant Roots Plants Potassium Dichromate Rhizome Vanadium Veins
The sampling sites were located from 30.33 to 40.90°N and 119.24 to 121.79°E across east China (Supplementary Figure S1). The salt marshes in east China are dominated by Phragmites australis and Suaeda salsa. Soil samples were taken from the rhizosphere of different plants (P. australis and S. salsa). A total of 36 plots were investigated in the Liaohe River Estuary, the Yellow River Estuary, Yancheng, and Hangzhou Bay in August 2020. We collected shoot, root, and rhizosphere soil samples. The roots were collected by root auger (diameter 10 cm) to a depth of 30–40 cm, and the rhizosphere soil that was tightly attached to roots and rhizomes was brushed off and collected. The soil samples were stored at 4°C for physicochemical analysis, and subsamples stored at-80°C were used for further molecular and metabolite analyses.
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Publication 2023
Estuaries Marshes Plant Roots Plants Rhizome Rhizosphere Rivers Salts Suaeda

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More about "Rhizome"

Rhizome is a cutting-edge AI-powered research optimization platform that empowers scientists to accelerate discovery and drive innovation.
Its flagship tool, PubCompare.ai, leverages advanced algorithms to enable researchers to effortlessly locate and compare protocols from a vast database of literature, preprints, and patents.
By harnessing the power of artificial intelligence, PubCompare.ai provides intelligent comparisons that help identify the most effective protocols and products, streamlining the research process and unlocking new insights.
This innovative solution is a game-changer for researchers, allowing them to optimize their workflows and uncover groundbreaking findings.
Rhizome's platform integrates seamlessly with common laboratory tools and techniques, such as HPLC-grade acetonitrile, DMSO, Whatman No. 1 filter paper, methanol, Milli-Q water, and formic acid.
This integration ensures a seamless and efficient research experience, enabling scientists to focus on their core work without distractions.
Whether you're exploring novel drug candidates, developing cutting-edge materials, or advancing our understanding of complex biological systems, Rhizome's AI-powered solutions can help you navigate the vast landscape of scientific literature and identify the most promising avenues for your research.
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