scTCR-seq and scBCR-seq data were aligned and quantified using the cellranger-vdj software (version 2.1.1 and 4.0, respectively). For TCRγδ we implemented a customized pipeline (
Taraxacum
These herbaceous perennials are widely distributed across temperate regions of the Northern Hemishpere and are recognized for their distinctive yellow flower heads and fluffy seed heads.
Taraxacum plants are known for their adaptability, prolifeic growth, and potential medicinal properties.
Reserachers leveraging PubCompare.ai can effortlessly locate protocols from literature, preprints, and patents to optimize reproducible studies on these versatile plants.
Most cited protocols related to «Taraxacum»
scTCR-seq and scBCR-seq data were aligned and quantified using the cellranger-vdj software (version 2.1.1 and 4.0, respectively). For TCRγδ we implemented a customized pipeline (
For the virus treatment, cages were provided an open feeder containing either 0.6 ml 30% sucrose solution or the same solution containing a 1 : 1000 dilution of viral inoculum (described in detail in Carrillo-Tripp et al. [43 (link)]). This dose was chosen through the production of dose–response curves to identify an inoculum concentration that would result in intermediate levels of mortality, as described in Carrillo-Tripp et al. [43 (link)]. Bees had ad libitum access to these feeders for 12 h, after which all of the solution had been completely consumed, and the open feeders were removed. For the rest of the experiment, bees had ad libitum access to untreated 30% sucrose solution fed through a drip feeder at the top of the cage.
Concurrent with the introduction of the open feeder, each cage received a pollen treatment. The cage either had no pollen added, polyfloral pollen, Cistus pollen, or Castanea pollen introduced into the bottom of the cage. Cistus and Castanea pollen were purchased from Pollenergie® (France). These pollens have been nutritionally well characterized, with Cistus being of overall lower quality (lower protein, amino acid content) and Castanea being of high quality (higher protein, amino acid content, beneficial affects during Nosema challenge) [24 (link)]. The polyfloral blend, identical to that described in Dolezal et al. [47 (link)], contained more than five species of pollen, with the most abundant being dandelion (Taraxacum sp. L.) and willow (Salix sp. L.), each of which made up approximately 8% by mass of the total blend. To this mixture, Cistus and Castanea pollen were added to a total of 8% by mass for each. In all cases, pollen was bee-collected and received in corbicular pellets. Each pollen source was homogenized into a powder in a coffee grinder, weighed out into 0.2 g aliquots and added to the bottom of each cage. After 24 h, remaining pollen was removed and replaced with fresh. In all cases, bees did not consume all of the pollen in any given 24 h period.
Mortality was monitored in all cages every 12 h with dead bees removed at each interval. Previous experiments had shown that mortality occurs primarily between 36 and 48 h post-infection (hpi, [43 (link)]) with some cages devoid of live bees by 72 hpi. Therefore, to sample bees during the height of infection but before death, six live bees were removed from each cage at 36 hpi. Mortality effects were measured as a cumulative percentage at 72 hpi, after which the experiment was ended because some cages had too few bees for meaningful analysis, similar to previous results [43 (link)]. Collected samples were stored at −70°C until processing.
Most recents protocols related to «Taraxacum»
Example 7
The MTT Cell Proliferation assay determines cell survival following apple stem cell extract treatment. The purpose was to evaluate the potential anti-tumor activity of apple stem cell extracts as well as to evaluate the dose-dependent cell cytotoxicity.
Principle: Treated cells are exposed to 3-(4,5-dimethythiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT). MTT enters living cells and passes into the mitochondria where it is reduced by mitochondrial succinate dehydrogenase to an insoluble, colored (dark purple) formazan product. The cells are then solubilized with DMSO and the released, solubilized formazan is measured spectrophotometrically. The MTT assay measures cell viability based on the generation of reducing equivalents. Reduction of MTT only occurs in metabolically active cells, so the level of activity is a measure of the viability of the cells. The percentage cell viability is calculated against untreated cells.
Method: A549 and NCI-H520 lung cancer cell lines and L132 lung epithelial cell line were used to determine the plant stem cell treatment tumor-specific cytotoxicity. The cell lines were maintained in Minimal Essential Media supplemented with 10% FBS, penicillin (100 U/ml) and streptomycin (100 μg/ml) in a 5% CO2 at 37 Celsius. Cells were seeded at 5×103 cells/well in 96-well plates and incubated for 48 hours. Triplicates of eight concentrations of the apple stem cell extract were added to the media and cells were incubated for 24 hours. This was followed by removal of media and subsequent washing with the phosphate saline solution. Cell proliferation was measured using the MTT Cell Proliferation Kit I (Boehringer Mannheim, Indianapolis, IN) New medium containing 50 μl of MTT solution (5 mg/ml) was added to each well and cultures were incubated a further 4 hours. Following this incubation, DMSO was added and the cell viability was determined by the absorbance at 570 nm by a microplate reader.
In order to determine the effectiveness of apple stem cell extracts as an anti-tumor biological agent, an MTT assay was carried out and IC50 values were calculated. IC50 is the half maximal inhibitory function concentration of a drug or compound required to inhibit a biological process. The measured process is cell death.
Results: ASC-Treated Human Lung Adenocarcinoma Cell Line A549.
Results: ASC-Treated Human Squamous Carcinoma Cell Line NCI-H520.
Results: ASC-treated Lung Epithelial Cell Line L132.
Summary Results: Cytotoxicity of Apple Stem Cell Extracts.
Apple stem cell extracts killed lung cancer cells lines A549 and NCI-H520 at relatively low doses: IC50s were 12.58 and 10.21 μg/ml respectively as compared to 127.46 μg/ml for the lung epithelial cell line L132. Near complete anti-tumor activity was seen at a dose of 250 μg/ml in both the lung cancer cell lines. This same dose spared more than one half of the L132 cells. See Tables 7-10. The data revealed that apple stem cell extract is cytotoxic to lung cancer cells while sparing lung epithelial cells.
Example 9
The experiment of Example 7 was repeated substituting other plant materials for ASC. Plant stem cell materials included Dandelion Root Extract (DRE), Aloe Vera Juice (AVJ), Apple Fiber Powder (AFP), Ginkgo Leaf Extract (GLE), Lingonberry Stem Cells (LSC), Orchid Stem Cells (OSC) as described in Examples 1 and 2. The concentrations of plant materials used were nominally 250, 100, 50, 25, 6.25, 3.125, 1.562, and 0.781 μg/mL. These materials were tested only for cells the human lung epithelial cell line L132 (as a proxy for normal epithelial cells) and for cells of the human lung adenocarcinoma cell line A549 (as a proxy for lung cancer cells).
A549 cells lung cancer cell line cytotoxicity results for each of the treatment materials.
DRE-Treated Lung Cancer Cell Line A549 Cells.
AVJ-Treated Lung Cancer Cell line A549 Cells.
AFP-Treated Lung Cancer Cell line A549 Cells.
GLE-treated Lung Cancer Cell line A549 Cells.
LSC-treated lung cancer cell lines A549 cells.
OSC-treated Lung Cancer Cell line A549 Cells.
L132 cells (“normal” lung epithelial cell line) cytotoxicity results for each of the treatment materials.
DRE-Treated Lung Epithelial Cell Line L132 cells.
AVJ-Treated Lung Epithelial Cell Line L132 cells.
AFP-Treated Lung Epithelial Cell Line L132 cells.
GLE-Treated Lung Epithelial Cell Line L132 cells.
LSC-Treated Lung Epithelial Cell Line L132 cells.
OSC-Treated Lung Epithelial Cell Line L132 cells.
Calculated values.
The animals were subjected to anesthesia at the end of the experimental protocol prior to sacrifice. A mixture of ketamine (Vet-Agro, Lublin, Poland) and xylazine (De Adelaar B.V, Venray, Holland) was prepared in a syringe. Administration of 25 µl/kg ketamine and 62.5 µl/kg xylazine was equivalent to the recommended dosage of 10 mg ketamine/kg and 5 mg xylazine/kg for rats [11 (link)]. The ketamine/xylazine mixture was administered i.p., and after 2 min, animals were sacrificed by decapitation.
Control group – animals that drank tap water.
Experimental group – animals that drank dandelion root for four weeks [6 (link)].
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More about "Taraxacum"
These herbaceous perennials are widely distributed across temperate regions of the Northern Hemisphere and are recognized for their distinctive yellow flower heads and fluffy seed heads.
Taraxacum plants are known for their adaptability, prolific growth, and potential medicinal properties.
Researchers leveraging PubCompare.ai, an AI-driven platform, can effortlessly locate protocols from literature, preprints, and patents to optimize reproducible studies on these versatile plants.
PubCompare.ai's intelligent tool allows users to streamline their research by identifying the best protocols and products through AI-powered comparisons.
These dandelion plants contain a variety of bioactive compounds that have piqued the interest of scientists.
Analytical techniques such as LC-20AD HPLC, Xtimate C18 column, and Nicolet 6700 FTIR spectrometer can be used to profile the chemical constituents of Taraxacum species.
The SPECTROstar Nano Microplate Reader and ImmunoCAP technology can be employed to assess the biological activities and therapeutic potential of these plants.
Further research on Taraxacum may involve the use of the Infinite 200 PRO multimode microplate reader, RID-20 refractive index indicator, Sigma J-2500 circular dichroism spectrometer, and TSK gel GMPWXL column for size-exclusion chromatography.
The Cell Ranger software can also be leveraged to analyze and interpret the data generated from these studies.
By harnessing the power of PubCompare.ai and the latest analytical tools, researchers can deepen their understanding of the Taraxacum genus and explore its untapped medicinal and commercial potentioal.