The isolates used in this study were collected from patients recruited in two studies that were both carried out in peri-urban Kampala-Uganda in sequence. An initial household contact study (HC) was conducted from 1992 to 1999 to describe the epidemiology of TB [population 1.7 million; population density 9400/km
2 (Uganda Bureau of Statistics;
http://www.ubos.org, 2011) and [29 (
link),30 (
link)]. The second study is the Kawempe Community Health study (KCH) that started in 2000 and is ongoing. The KCH focuses on host factors associated with primary infection, re-infection, reactivation, and progression from MTB infection to active TB clinical disease and also identifies and tracks strains of MTB circulation in households and the local community.
During the conduct of these epidemiologic cohort studies (HC and KCH), adults with sputum smear positive TB were consecutively enrolled as index cases. An index case was defined as the first TB case identified in a household who was ≥ 18 years of age and lived with one or more household contacts. A household was defined as a group of people living within one residence, share meals together and identified a head of family who made decisions for the household. Following the identification of the index cases, home health visitors contacted the household contacts for health education about TB and the study. A household contact was defined as any individual who had resided in the household for at least 7 consecutive days during the 3 months prior to the diagnosis of TB in the index case. Household contacts were screened for both latent (tuberculin skin test) and active disease (sputum smear and culture) on first contact. Those found not to have TB according to the study protocol were followed every three months for a period of two years to identify contacts that later developed active TB. Household contacts were classified as co-prevalent cases if active TB was present at baseline or during three months of household follow-up and as incident cases if active TB developed after three months of follow-up. In both studies (HC and KCH) a total of 1746 isolates were stored from the study area over the period of study (1995–2009). Patients with either latent or active TB were treated with isoniazid (INH) preventive therapy or standard short course combination chemotherapy for active TB in accordance with the Uganda National TB and Leprosy Program guidelines.
At baseline, data of enrolled patients, including age, sex, HIV status, presence of cavity, ethnicity, status of smoking, Body Mass Index (BMI), level of education, alcohol drinking, income, history of diabetes, presence of BCG scar, night sweats, TB in the past, hemoptysis, swollen lymph nodes, extent of disease on chest radiographs and smear grade, were recorded. The extent of disease on chest radiographs was classified as normal, mild, moderate, or far advanced using a validated, standardized scheme [31 ], with lesions recorded by an independent reader who was blinded to smear and culture results. Sputum smear microscopy and culture were performed at either the National TB Reference Laboratory (NTRL) or the Joint Clinical Research Centre (JCRC) TB Laboratory. Isolates were confirmed as MTB using the BACTEC
® para-nitro-acetyl amino-hydroxy-propiophenone (NAP) susceptibility method [32 (
link)] and later stored at – 80°C in 7H9 broth supplemented with OADC and glycerol for future analyses.
The institutional review boards and ethics committees at Case Western Reserve University, Makerere University, and the Ugandan AIDS Research Council, and the Uganda National Council for Science and Technology approved the study protocols. All patients gave written informed consent for study participation, including pre- and post-HIV test counseling.
Wampande E.M., Mupere E., Debanne S.M., Asiimwe B.B., Nsereko M., Mayanja H., Eisenach K., Kaplan G., Boom H.W., Gagneux S, & Joloba M.L. (2013). Long-term dominance of Mycobacterium tuberculosis Uganda family in peri-urban Kampala-Uganda is not associated with cavitary disease. BMC Infectious Diseases, 13, 484.