Based on available dormancy-related data in herbaceous and woody species, 78 dormancy candidate genes conserved in Arabidopsis published by Tarancón et al.4 (link), and 79 CGs conserved in Prunus species, blackcurrant, poplar and Arabidopsis published by Castède et al.42 were selected (Supplementary Table S8 ). For each CG, the peach ortholog was identified from Arabidopsis sequence in Phytozome v12 (https://phytozome.jgi.doe.gov/pz/portal.html ) and other published studies. The putative P. mume orthologs were identified by BLASP (E-value < 1e-10, identity >30% and coverage >70%) using Arabidopsis and peach sequences as query, and genes with the highest E-values were selected. As the well-characterized strong CGs, all 13 putative PmCBFs and 6 PmDAMs identified in P. mume genome19 (link) were included for further analysis. Furthermore, a Pfam domain analysis (http://pfam.xfam.org/ ) was performed for each CG to ensure the accuracy of the orthologs in three species. In addition, phylogenetic trees were built using MEGA7.1 (Maximum-likelihood method, 1,000 bootstrap replicates) to identify the most closely related orthologs.
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