SMRTbell templates were subjected to standard SMRT sequencing using an engineered phi29 DNA polymerase on the PacBio RS system according to manufacturer's protocol. The PacBio RS system continuously monitors zero-mode waveguides (ZMWs) in sets of 75000 at a time. Within each ZMW a single DNA polymerase molecule is attached to the bottom surface such that it permanently resides within the detection volume where it can be watched as it performs sequencing by synthesis. Within each chamber, Phospholinked nucleotides, each type labeled with a different colored fluorophore, are then introduced into the reaction solution at high concentrations that promote enzyme speed, accuracy, and processivity. Pulse calling, utilized a threshold algorithm on the dye weighted intensities of fluorescence emissions, and read alignments, achieved using a Smith-Waterman algorithm. Reads were filtered after alignment to remove low quality sequences derived from doubly-loaded ZMWs.
Melons
These large, round fruits come in a variety of colors, including green, yellow, and orange, and are commonly enjoyed as refreshing snacks or incorporated into salads, desserts, and other culinary dishes.
Melons are a valuable source of vitamins, minerals, and antioxidants, making them a healthy addition to any diet.
Reserarchers can leverag AI-driven platforms like PubCommpare.ai to optimize melon research by easily locating protocols and identifying the best products and procedures for their studeis.
Most cited protocols related to «Melons»
SMRTbell templates were subjected to standard SMRT sequencing using an engineered phi29 DNA polymerase on the PacBio RS system according to manufacturer's protocol. The PacBio RS system continuously monitors zero-mode waveguides (ZMWs) in sets of 75000 at a time. Within each ZMW a single DNA polymerase molecule is attached to the bottom surface such that it permanently resides within the detection volume where it can be watched as it performs sequencing by synthesis. Within each chamber, Phospholinked nucleotides, each type labeled with a different colored fluorophore, are then introduced into the reaction solution at high concentrations that promote enzyme speed, accuracy, and processivity. Pulse calling, utilized a threshold algorithm on the dye weighted intensities of fluorescence emissions, and read alignments, achieved using a Smith-Waterman algorithm. Reads were filtered after alignment to remove low quality sequences derived from doubly-loaded ZMWs.
Eleven cucumber inbred lines were employed for genetic diversity studies with SSR markers. These 11 lines represented six market types worldwide: ‘Chinese Long’ type (228, 9930 and Xintaimici), Southern China type (Baiyesan and 00956), Southwestern China type (Xishuangbanna-1, Xishuangbanna-2), European greenhouse type (65 G and 9110 Gt), American slicing type (Marketmore 76), and Japanese type (185). All these inbred lines were from the Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences.
Seeds for two melon inbred lines (Cucumis melo var. saccherinus cv.3A832 and C. melo var. chinensis cv. 4G21), two watermelon lines (Citrullus lanatus var. lanatus cv. 97103 and C. lanatus var. citroides PI 296341), and two squash lines (Cucurbita moschata Duch cv. bush#10 and C. maxima cv. Mengri) were kindly provided by Prof. Yong Xu and Dr. Jianshe Wang (Beijing Vegetable Research Centre, Beijing). These lines were used to test the cross-species transferability of SSR markers developed in cucumber.
Total DNA was isolated from expanding leaves of three-week old plants using the modified CTAB method [20] (link).
The study area included 353 houses and several public buildings of 13 neighboring rural villages (
The two main ethnic groups are Creole and Toba. Tobas represent 24% of the 1,187 inhabitants of the study area and occupy 16% of the houses. Creoles are of European descent and usually had a high degree of mixing with indigenous people generations ago. Most Creoles migrated to the area during the last 50–100 years from nearby provinces or from Europe. Tobas –the only indigenous group in the area– were traditionally nomadic or semi-nomadic hunter-gatherers. Following local colonization in the 1920s they began to rely increasingly on agriculture, temporary informal jobs, and state-run welfare programs a few decades ago [25] . Local authorities reported having approximately 5,000 beneficiaries of welfare programs among the ∼14,000 inhabitants in the whole municipality, both Toba and Creoles. Rural residents live mostly on a subsistence economy, and may grow cotton, corn, pumpkins and water-melons or raise livestock (mainly goats, but also cows and occassionally sheep). The nearest hospital is in Pampa del Indio town (∼5,000 inhabitants), 10–45 km away from the study area by dirt roads. The last community-wide insecticide spraying campaign conducted by vector control personnel was carried out in 1996, except for a few houses treated by villagers or hospital staff in 2006, and no specific or systematic educational campaigns regarding Chagas disease or its transmission were performed in the area.
The study area encompassed 327 inhabited house compounds, including all of its domestic and peridomestic sites. There were 26 uninhabited or abandoned houses and 37 public buildings (including 11 schools, five primary health care centers, and several temples and community centers). A house compound encompassed the domicile and all sites within the peridomestic area (i.e., peridomicile) –usually a latrine, a storeroom, a kitchen, an oven, one or more corrals, and one or more sites for chickens and other poultry (trees, coops, nests) (
Most recents protocols related to «Melons»
Example 1
The efficacy of treatment for killing nematode species has been examined, since nematodes are a key detrimental factor for many commonly-grown crops, such as, but not limited to, citrus trees, bananas, barley, beans, lettuce, potatoes, melons, strawberries and tomatoes.
Initial experiments, as shown in Table 1, have indicated current and voltage levels needed to reliably kill nematodes.
Soil moisture and soil temperature were measured before and after the treatments to maximize the efficiency of the disinfection process. Soil preparation was the same for the five experiments.
It can be seen that, to kill nematodes, at least 1000 V is needed at a current above about 4.6 A. The optimum exposure time is 4 separate exposures, each of about 10 s.
Top products related to «Melons»
More about "Melons"
These round, large produce come in a variety of colors like green, yellow, and orange, and are commonly enjoyed as refreshing snacks or incorporated into salads, desserts, and other culinary dishes.
Melons are a rich source of vitamins, minerals, and antioxidants, making them a healthy addition to any diet.
Melon Research Optimization: Researchers can leverage AI-driven platforms like PubCompare.ai to streamline their melon studies.
These tools help locate protocols from literature, preprints, and patents, while providing AI-driven comparisons to identify the best procedures and products for their research.
For example, the Melon Gel IgG Purification Kit and Melon Gel IgG Spin Purification Kit are two products that can be used to purify antibodies from melon samples.
Similarly, high-throughput sequencing platforms like the HiSeq 2500 and HiSeq 2000 can be used to analyze melon genomes and transcriptomes.
Melon Sample Preparation: Effective sample preparation is crucial for melon research.
The DNeasy Plant Mini Kit can be used to extract high-quality DNA from melon tissues, while the TRI Reagent can be employed for RNA isolation.
The NanoDrop 2000 spectrophotometer is a useful tool for quantifying and assessing the purity of nucleic acid samples extracted from melons.
Melon Gel Resin and Purification: The Melon Gel resin and Melon Gel Purification Kit are also valuable tools for melon researchers.
These products can be used to purify and concentrate melon-derived proteins, such as enzymes and metabolites, for further analysis and characterization.
In summary, melons are a versatile and nutritious group of fruits with a wide range of applications in culinary and research settings.
By leveraging the right tools and technologies, researchers can optimize their melon studies, enhance reproducibility, and gain valuable insights into these fascinating Cucurbitaceae cultivars.