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Rivers

Rivers are dynamic, freshwater ecosystems that play a vital role in the Earth's hydrologycal cycle.
These natural waterbodies flow continuously, carving landscapes and supporting diverse flora and fauna.
They serve as important resources for human activities such as transportation, irrigation, and recreation.
Studying the characteristics and processes of rivers, including their hydrology, geomorphology, and ecology, is crucial for understanding and managing these complex systems.
Researchers can leverage cutting-edge technologies like AI-driven platforms to optimize their river studies and uncover the most effective research approaches.

Most cited protocols related to «Rivers»

Mouse tissues were harvested from eight-week-old male C57Bl/6 mice (Charles River). The murine embryonic fibroblasts were isolated from C57Bl/6 embryos at embryonic day 14.5. ChIP-Seq and RNA-Seq experiments were performed as described14 (link),30 (link), with the use of Illumina GAIIx and HiSequation (2000) instruments (details are provided in Supplementary Information). Hi-C experiments in adult cortex were conducted as described28 (link). A software pipeline to process ChIP-Seq data and predict enhancers is described in Supplementary Methods. Highly correlated biological replicates for ChIP-Seq experiments were pooled for all subsequent data analyses. An algorithm to define the enhancer–promoter unit is given in Supplementary Methods.
Publication 2012
Adult Biopharmaceuticals Chromatin Immunoprecipitation Sequencing Cortex, Cerebral Embryo Fibroblasts Males Mice, Inbred C57BL Mus Rivers RNA-Seq Tissues
The inhibitor JQ1 was synthesized in both racemic and enantiomerically pure format using the synthetic route outlined in Scheme S1 and Scheme S2 and its structure was fully characterized. Human bromodomains were expressed in bacteria as His-tagged proteins and were purified by nickel-affinity and gel-filtration chromatography. Proteins integrity was assessed by SDS-PAGE and Electro-spray Mass Spectrometry on an Agilent 1100 Series LC/MSD TOF. All crystallizations were carried out at 4 °C using the sitting drop vapour-diffusion method. X-ray diffraction data were collected at the Swiss Light source beamline X10SA, or using a Rigaku FR-E generator. Structures were determined by molecular replacement. Isothermal titration calorimetry experiments were performed at 15 °C on a VP-ITC titration microcalorimeter (MicroCal). Thermal melting experiments were carried out on a Mx3005p RT- PCR machine (Stratagene) using SYPRO Orange as a fluorescence probe. Dose-ranging small-molecule studies of proliferation were performed in white, 384-well plates (Corning) in DMEM media containing 10 % FBS. Compounds were delivered with a PerkinElmer JANUS pin-transfer robot and Envision multilabel plate-reader, using a commercial assay (Cell TiterGlo). Murine xenografts were established by injecting NMC cells in 30 % Matrigel (BD Biosciences) into the flank of 6 week-old female NCr nude mice (Charles River Laboratories). Tumor measurements were assessed by caliper measurements, and volume calculated using the formula Vol = 0.5 × L × W2 (link). All mice were humanely euthanized, and tumors were fixed in 10 % formalin for histopathological examination. Quantitative immunohistochemistry was performed using the Aperio Digital Pathology Environment (Aperio Technologies, Vista, CA) at the DF/HCC Core Laboratory at the Brigham and Women’s Hospital.
Publication 2010
Bacteria Biological Assay Calorimetry Cells Crystallization Diffusion Females Fluorescent Probes Formalin Gel Chromatography Heterografts Homo sapiens Immunohistochemistry Mass Spectrometry matrigel Mice, Nude Mus Neoplasms Nickel Proteins Reverse Transcriptase Polymerase Chain Reaction Rivers SDS-PAGE Titrimetry TNFSF14 protein, human Woman X-Ray Diffraction
DEREG and WT C57BL/6 mice were bred at the animal facility of the Institut für Medizinische Mikrobiologie, Immunologie und Hygiene at the Technische Universität München. Scurfy mice (B6.Cg-Foxp3 sf/J) were purchased from Charles River Laboratories. All animal experiments were performed under specific pathogen-free conditions and in accordance with institutional, state, and federal guidelines.
Publication 2007
Animals Mice, House Mice, Inbred C57BL Rivers Specific Pathogen Free
The two lead compounds 18 and 21 were advanced for in vivo anti-inflammatory activity study and celecoxib (1) was used as reference drug. In vivo anti-inflammatory activity was measured using a carrageenan-induced rat paw edema assay. In brief, three to five male Sprague–Dawley rats, 8–11-weeks-old, weighing 180–200 g (Charles-River Canada) were used in each group. Animals were randomized into different treatment groups based on similar paw size and body weight. Test compounds 18 and 21 suspended in water containing 1% methyl cellulose were administered orally for a minimum of four different doses (0.3. 1, 5, 10 mg kg−1) 1 h prior to a 0.05 ml subcutaneous injection of fresh 1% carrageenan in 0.9% NaCl solution under the plantar skin of the hind paw. Control experiments were identical, except that the vehicle did not contain a test compound. The volume of the injected paw was measured at 0, 3, and 5 h using a UGO Basile 7141 Plethysmometer (series no. 43201), each value is mean of 10 measurements. A dose–response curve was constructed using GraphPad Prism 5.0 and ED50were calculated. No unusual change in behavior and toxic effects was noticed in all animals. In vivo anti-inflammatory assays were carried using a protocol approved by the Health Sciences Animal Welfare Committee, University of Alberta, Edmonton, Canada.
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Publication 2017
Animals Anti-Inflammatory Agents Biological Assay Body Weight Carrageenan Celecoxib compound 18 Edema Males Methylcellulose Normal Saline Pharmaceutical Preparations prisma Rats, Sprague-Dawley Rivers Skin Subcutaneous Injections
C57BL/6J (Jackson Laboratory), C57BL/6JCrl (Charles River Laboratories) and C57BL/6NTac (Taconic) were obtained from commercial breeders. The C57BL/6-Tyrc-Brd mice were maintained as a closed colony by A.B17 (link). Embryonic stem cell lines were established from C57BL/6J and C57BL/6N blastocysts on feeder cells using standard methods11 .
Publication 2009
Blastocyst Embryonic Stem Cells Feeder Cells Mice, Inbred C57BL Rivers

Most recents protocols related to «Rivers»

Example 47

CD-1 (n=3 per experimental group; female; 6-7-week-old; 21-24 g, Charles River) mice were infected with P. berghei (ANKA GFP-luc) for 96 h before treatment with vehicle or compound (day 0). On day 2, female A. stephensi mosquitoes were allowed to feed on the mice for 20 min. After 1 week (day 9), the midguts of the mosquitoes were dissected out and oocysts were enumerated microscopically (12.5× magnification).

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Patent 2024
Biological Assay Culicidae Mice, House Oocysts Rivers Transmission, Communicable Disease Woman
Not available on PMC !

Example 46

CD-1 mice (n=4 per experimental group; female; 6-7-week-old; 20-24 g, Charles River) were inoculated intravenously with approximately 1×105 P. berghei (ANKA GFP-luc) sporozoites freshly dissected from A. stephensi mosquitoes. Immediately after infection, the mice were treated with single oral doses of Compound; infection was monitored as described for the P. berghei erythrocytic-stage assay. For time-course experiments, the time of compound treatment (single oral dose of 10 mg kg−1) was varied from 5 days before infection to 2 days after infection.

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Patent 2024
Biological Assay Culicidae Erythrocytes Infection Mice, House Rivers Sporozoites Woman

Example 6

Tumor cell migration is essential for tumor metastasis. Representative compounds described herein were investigated their effects on tumor metastasis in an animal model. Tumor cells (4T1 breast tumor cells) were injected into the mammary fat-pad of mice. The metastasis of these breast tumor cells from the mammary gland to the lung was monitored by the clonogenic assay.

Balb/c mice were purchased from Charles River. All animal procedures were approved by the Animal Care and Use Committees of the Weill Cornell Medical College and performed in accordance with institutional polices. For xenograft tumor metastasis studies, 5×105 4T1 cells were suspended in 100 μL PBS and injected subcutaneously into the mammary glands of 6-8 week old female Balb/c mice. Tumor incidence was monitored for 21 days after injection. Tumor size was measured three times a week, and the volume was calculated using the formula length×width2×0.5. Compound treatment was initiated 7 days after tumor implantation; animals were administered daily with indicated dose for 2 weeks. On day 28, the mice were sacrificed. Numbers of metastatic 4T1 cells in lungs were determined by the clonogenic assay. In brief, lungs were removed from each mouse on day 28, finely minced and digested for 2 h at 37° C. in 5 mL of enzyme cocktail containing PBS and 1 mg/mL collagenase type IV on a rocker. After incubation, samples were filtered through 70-μm nylon cell strainers and washed twice with PBS. Resulting cells were suspended, plated with a series of dilutions in 10-cm tissue culture dishes in RPMI-1640 medium containing 60 μM thioguanine, metastasized tumor cells formed foci after 14 days, at which time they were fixed with methanol and stained with 0.03% methylene blue for counting. Data were expressed as mean±S.D. and analyzed by Student's t test with significance defined as p<0.05.

When tested in this animal model at 100 mg/kg, Compounds 10 and 43 showed more than 90% inhibition of tumor metastasis. The compounds described herein are contemplated to be useful for treating a condition or disorder mediated by fascin activity and/or tumor metastasis.

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Patent 2024
Animal Model Animals Biological Assay Breast Breast Neoplasm Cells Culture Media Enzymes fascin Heterografts Hyperostosis, Diffuse Idiopathic Skeletal Lung Mammary Gland Matrix Metalloproteinase 2 Methanol Mice, Inbred BALB C Migration, Cell Mus Neoplasm Metastasis Neoplasms Nylons Ovum Implantation Pad, Fat Psychological Inhibition Rivers Technique, Dilution Thioguanine Tissues Woman

Example 7

Sepsis modeling was performed as described by Gorringe A. R., Reddin, K. M., Voet P. and Poolman J. T. (Methods Mol. Med. 66, 241 (Jan. 1, 2001)) and Johswich, K. O. et al. (Infect. Immun. 80, 2346 (Jul. 1, 2012)). Groups of 6 eight-week-old C57BL/6 mice (Charles River Laboratories) were inoculated via intraperitoneal injection with N. meningitidis strain B16B6, B16B6 Δtbpb, or B16B6 Δnmb0313 (N=2 independent experiments). To prepare inoculums, bacterial strains for infection were grown overnight on GC agar, resuspended and then grown for 4 h in 10 ml of Brain Heart Infusion (BHI) medium at 37° C. with shaking. Cultures were adjusted such that each final 500 μl inoculum contained 1×106 colony forming units and 10 mg human holo-transferrin. Mice were monitored at least every 12 h starting 48 h before infection to 48 h after infection for changes in weight, clinical symptoms and bacteremia. Mice were scored on a scale of 0-2 based on the severity of the following clinical symptoms: grooming, posture, appearance of eyes and nose, breathing, dehydration, diarrhea, unprovoked behavior, and provoked behavior. Animals reaching endpoint criteria were humanely euthanized. Animal experiments were conducted in accordance with the Animal Ethics Review Committee of the University of Toronto.

FIG. 7 shows the results obtained. FIG. 7A shows a solid phase binding assay consisting of N.men cells fixed with paraformaldehyde (PFA) or lysed with SDS and were spotted onto nitrocellulose and probed with α-TbpB antibodies. ΔSLAM/tn5 refers to the original strain of SLAM deficient cells obtained through transposon insertion. ΔSLAM describes the knockout of SLAM in Neisseria meningitidis obtained by replacing the SLAM ORF with a kanamycin resistance cassette. FIG. 7B shows a Proteinase K digestion assay showing the degradation of TbpB, LbpB and fHbp only when Nm cells are SLAM deficient (ΔSLAM). Nm cells expressing individual SLPs alone and with SLAM were incubated with proteinase K and Western blots were used to detect levels of all three SLPs levels with and without protease digestion (−/+). Flow cytometry was used to confirm that ΔSLAM cells could not display TbpB (FIG. 7C) or fHbp (FIG. 7D) on the cell surface. Antibodies against TbpB and fHbp were used to bind surface exposed SLPs followed by incubation with a α-Rabbit antibody linked to phycoerythrin to provide fluorescence. The mean fluorescent intensity (MFI) of each sample was measured using the FL2 detector of a BD FACS Calibur. The signal obtained from wildtype cells was set to 100% for comparison with signals from knockout cells. Error bars represent the standard error of the mean (SEM) from three experiments. Shown in FIG. 7E are the results of mice infections with various strains. Mice were infected via intraperitoneal injection with 1×106 CFU of wildtype N. meningitidis strain B16B6, B16B6 with a knockout of TbpB (ΔtbpB), or B16B6 with a knockout of nmb0313 Δslam and monitored for survival and disease symptoms every 12 h starting 48 hr pre-infection to 48 h post-infection and additionally monitored at 3 hr post-infection. Statistical differences in survival were assessed by a Mantel-Cox log rank test (GraphPad Prism 5) (*p<0.05, n.s. not significant). These results show a marked reduction in post-infection mortality in mice infected with the knockout of nmb0313 Δslam strain.

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Patent 2024
Agar Animals Antibodies Bacteremia Bacterial Infections Biological Assay Brain Cells Cultured Cells Dehydration Diarrhea Digestion Endopeptidase K Eye Flow Cytometry Fluorescence Genes Heart Homo sapiens Immunoglobulins Infection Injections, Intraperitoneal Jumping Genes Kanamycin Resistance Mice, Inbred C57BL Mus Neisseria Neisseria meningitidis Nitrocellulose Nose paraform Peptide Hydrolases Phycoerythrin prisma Rabbits Rivers Sepsis Strains Transferrin Virulence Western Blot

Example 15

Diet Induced Obese (DIO) mice were purchased from Charles River and administrated by s.c. route with GLP1R agonist or GLP1R/GCGR dual agonist. Mouse body weight and food intake were monitored daily for 2 weeks, and followed before (5 days in total) and during treatment (5-weeks in total). After 5 weeks, mice were sacrificed and visceral fat mass were taken out and weighed.

Dose dependent weight loss induced by mTA4 or mTA37 (see Table 6) is shown in FIG. 14. Chronic effect on body weight loss with daily administration of mTA4 or mTA37 for 5 weeks and cumulative food intake for 2 weeks are shown in FIG. 15. Increased intra-peritoneal glucose tolerance after daily administration of mTA4 or mTA37 for 5 weeks is shown in FIG. 16. Reduced fasting blood glucose levels after daily administration of mTA4 or mTA37 for 5 weeks is shown in FIG. 17.

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Patent 2024
Blood Glucose Body Weight Diet Eating Glucose Immune Tolerance Injections, Intraperitoneal Mice, Obese Mus Rivers Visceral Fat

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The C57BL/6 mouse is a widely used inbred mouse strain. It is a common laboratory mouse model utilized for a variety of research applications.
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Sprague-Dawley rats are an outbred albino rat strain commonly used in laboratory research. They are characterized by their calm temperament and reliable reproductive performance.
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BALB/c mice are an inbred strain of laboratory mice commonly used in scientific research. They are a widely utilized model organism for various experiments and studies. The BALB/c strain is known for its susceptibility to certain diseases and its ability to produce high levels of antibodies, making it a valuable tool for immunological research.
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The C57BL/6J mouse is a widely used laboratory mouse strain. It is an inbred strain that has a black coat color. The C57BL/6J mouse is commonly used as a control strain in various research applications.
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BALB/c nude mice are an inbred strain of mice that lack a functional immune system due to a genetic mutation. They are athymic, meaning they lack a thymus gland, which is essential for the development of T cells. This results in a severely compromised adaptive immune response. BALB/c nude mice are commonly used in biomedical research for the study of human diseases, the evaluation of new therapies, and the development of xenograft models.
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Male Sprague-Dawley rats are a widely used laboratory animal model. They are characterized by their large size, docile temperament, and well-established physiological and behavioral characteristics. These rats are commonly used in a variety of research applications.
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Wistar rats are a commonly used strain of laboratory rats. They are characterized by their wide, rounded body shape and are known for their reliable and consistent performance in various research applications.
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CD-1 mice are a widely used outbred mouse strain that exhibit genetic diversity. They are suitable for a variety of research applications due to their adaptability and lack of specific genetic modifications.
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The C57BL/6 is a widely used inbred mouse strain that serves as a common model organism for biomedical research. It is genetically homogeneous, allowing for consistent and reproducible experimental results. The C57BL/6 strain exhibits characteristics that make it suitable for a variety of research applications.
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Female BALB/c mice are a commonly used inbred mouse strain. They are widely utilized in various research applications due to their well-characterized genetic and phenotypic characteristics.

More about "Rivers"

Rivers are dynamic, freshwater ecosystems that play a vital role in the Earth's hydrological cycle.
These natural waterbodies flow continuously, carving landscapes and supporting diverse flora and fauna.
They serve as important resources for human activities such as transportation, irrigation, and recreation.
Studying the characteristics and processes of rivers, including their hydrology, geomorphology, and ecology, is crucial for understanding and managing these complex systems.
Researchers can leverage cutting-edge technologies like AI-driven platforms to optimize their river studies and uncover the most effective research approaches.
PubCompare.ai, for example, revolutionizes river research by enabling scientists to locate the best protocols from literature, preprints, and patents through smart comparisons.
This tool can help researchers working with a variety of animal models, including C57BL/6 mice, Sprague-Dawley rats, BALB/c mice, C57BL/6J mice, BALB/c nude mice, male Sprague-Dawley rats, Wistar rats, and CD-1 mice, to optimize their river studies and uncover the most effective research approaches.
Undestanding the dynamics and processes of rivers, such as their hydrology, geomorphology, and ecology, is crucial for managing these complex systems.
Leveraging cutting-edg AI-driven platforms like PubCompare.ai can help researchers working with common animal models, like C57BL/6, BALB/c, and Sprague-Dawley, to locate the best protocols and optimize their river studies.