The largest database of trusted experimental protocols
> Physiology > Organism Attribute > Pigmentation

Pigmentation

Pigmentation is the coloration of the skin, hair, and other tissues, resulting from the deposition of pigments such as melanin.
It is a complex biological process involving various factors, including genetics, hormones, and environmental exposures.
Pigmentation plays a crucial role in protecting the skin from UV radiation, and its disorders can lead to conditions like albinism, vitiligo, and melasma.
Understanding the mechanisms of pigmentation is essential for adressing cosmetic and medical concerns related to skin tone and appearance.
This MeSH term provides a comprehensive overview of the biological and clinical aspects of pigmentation, serving as a valuable resource for researchers and clinicians in the field of dermatology and cosmetology.

Most cited protocols related to «Pigmentation»

This study was directed to improve our understanding of the principles and mechanisms of reconstitution, a frequently used method in plant biology for analysis of protein-pigment interaction. We have previously contributed to modify the reconstitution protocol [9 (link), 10 (link)] and established MST, DLS and ELS in our laboratory to elucidate the basis of the molecular interactions. NanoDSF experiments were performed by AMJ at NanoTemper Technologies GmbH (Munich, Germany).
Publication 2019
Pigmentation Plants Staphylococcal Protein A
Zebrafish were maintained in accordance with UK Home Office regulations, UK Animals (Scientific Procedures) Act 1986, under project licence 80/2192, which was reviewed by The Wellcome Trust Sanger Institute Ethical Review Committee.
Heterozygous F2 fish were randomly incrossed and upon egg collection F2 adults were fin clipped and kept as isolated breeding pairs. For each family we aimed to phenotype 12 pairs, over 3 weeks of breeding. Each clutch of eggs, which was labelled with the breeding pair ID, was sorted into three 10cm petri dishes of ~50 embryos each. Embryos were incubated at 28.5°C. Previous mutagenesis screens were used as a reference for the phenotyping 27 (link),28 (link). Those phenotypes studied were: day 1 – early patterning defects, early arrest, notochord, eye development, somites, patterning and cell death in the brain; day 2 – cardiac defects, circulation of the blood, pigment (melanocytes), eye and brain development; day 3 – cardiac defects, circulation of the blood, pigment (melanocytes), movement and hatching; day 4 – cardiac defects, movement, pigment (melanocytes) and muscle defects; day 5 – behaviour (hearing, balance, response to touch), swim bladder, pigment (melanocytes, xanthophores and iridophores), distribution of pigment, jaw, skull, axis length, body shape, notochord degeneration, digestive organs (intestinal folds, liver and pancreas), left-right patterning. In the first round of the phenotyping, all phenotypic embryos were discarded. At 5 dpf, >48 phenotypically wild-type embryos were harvested. Embryos were fixed in 100% methanol and stored at −20°C until genotyping was initiated. In the second round, F2s that were heterozygous for a suspected causal mutation were re-crossed. All phenotypes observed in those clutches of embryos were counted, documented and photographed. Phenotypic embryos were fixed in 100% methanol and at 5 dpf 48 phenotypically wild-type embryos were also collected. The first round genotyping results were assessed using a Chi-squared test with a p-value cut off of <0.05. If the number of homozygous embryos was above the cut-off (i.e. in the expected 25% ratio), the allele was deemed to not cause a phenotype within the first 5 dpf. If the number of homozygous embryos was below the cut-off, the allele was carried forward into the second round of phenotyping. In the second round, we aimed to genotype 48 embryos for each phenotype, ideally from multiple clutches. An allele was documented as causing a phenotype if the phenotypic embryos were homozygous for the allele. We allowed up to 10% of embryos for a given phenotype to not be homozygous, to account for errors in egg collection. Such alleles were outcrossed for further genotyping with F4 embryos at a later date. Where possible, alleles were also submitted to complementation tests.
Publication 2013
Adult Air Sacs Alleles Animals Blood Circulation Body Shape Brain Brain Death Cardiac Arrest Cell Death Cells Cranium Digestive System Eggs Embryo Epistropheus Fishes Genetic Complementation Test Genotype Heart Heterozygote Homozygote Hyperostosis, Diffuse Idiopathic Skeletal Intestines Liver Melanocyte Methanol Movement Muscle Tissue Mutagenesis Mutation Notochord Pancreas Phenotype Pigmentation Somites Touch Zebrafish
In the International AMD Genomics Consortium (IAMDGC), we gathered 26 studies with each including (i) advanced AMD cases with GA and/or CNV in at least one eye and age at first diagnosis ≥ 50 years, (ii) intermediate AMD cases with pigmentary changes in the RPE or more than five macular drusen greater than 63μm and age at first diagnosis ≥ 50 years, or (iii) controls without known advanced or intermediate AMD. Recruitment and ascertainment strategies varied by study (Supplementary Tables 1 and 2, Supplementary Note 7). All groups collected data according to the Declaration of Helsinki principles. Study participants provided informed consent and protocols were reviewed and approved by local ethics committees.
Publication 2015
Diagnosis Macula Lutea Pigmentation Regional Ethics Committees
In the International AMD Genomics Consortium (IAMDGC), we gathered 26 studies with each including (i) advanced AMD cases with GA and/or CNV in at least one eye and age at first diagnosis ≥ 50 years, (ii) intermediate AMD cases with pigmentary changes in the RPE or more than five macular drusen greater than 63μm and age at first diagnosis ≥ 50 years, or (iii) controls without known advanced or intermediate AMD. Recruitment and ascertainment strategies varied by study (Supplementary Tables 1 and 2, Supplementary Note 7). All groups collected data according to the Declaration of Helsinki principles. Study participants provided informed consent and protocols were reviewed and approved by local ethics committees.
Publication 2015
Diagnosis Macula Lutea Pigmentation Regional Ethics Committees
Tumor slides from the internal training cohort were reviewed by 2 pathologists (K.K. and W.D.T.) who were blinded to patient clinical outcomes; they used an Olympus BX51 microscope (Olympus Optical Co. Ltd., Tokyo, Japan) with a standard 22-mm diameter eyepiece.
Tumor STAS was defined as tumor cells within air spaces in the lung parenchyma beyond the edge of the main tumor (Figure 1A and 1D) and was composed of 3 morphological patterns: 1) micropapillary structures consisting of papillary structures without central fibrovascular cores (Figure 1A and 1B),15 (link), 16 (link) which occasionally form ring-like structures within air spaces (Figure 1C); 2) solid nests or tumor islands consisting of solid collections of tumor cells filling air spaces (Figure 1D and 1E)17 (link); and 3) single cells consisting of scattered discohesive single cells (Figure 1F). The edge of the main tumor was defined as the smooth surface of the tumor which is easily recognizable at gross or at low-power field examination as highlighted with the dotted line in Figure 1A. Tumor STAS was considered present when tumor STAS, as defined above, was identified beyond the edge of the main tumor even if it existed only in the first alveolar layer from the tumor edge. Lesions of STAS consist of tumor cells which morphologically appear to be situated within air spaces as micropapillary clusters, solid nests or single cells that are detached from alveolar walls. This differs from lepidic growth where tumor cells grow in a linear fashion along the surface of alveolar walls. Extent of air space filling by tumor cells varied from abundant cellular infiltrates to very inconspicuous single cells or micropapillary clusters that were sometimes difficult to distinguish from alveolar macrophages. In addition, distance between tumor surface and farthest STAS from tumor edge was measured by a ruler. Since lung specimens were not consistently inflated during processing, in order to account for artifactual atelectasis, we also measured according to the number of alveolar spaces.
Tumor cells of STAS were distinguished from alveolar macrophages using the following methods. Macrophages in smokers typically have cytoplasm containing faint brown pigment and black carbon granules while in nonsmokers the pigment is lacking and cytoplasm is sometimes foamy. Nuclei are small, uniform, and regular, without atypia. Nuclear folds are frequent and nucleoli are inconspicuous or absent. In contrast, tumor cells of STAS typically lack cytoplasmic pigment or foamy cytoplasm. They often grow in cohesive clusters and nuclei are atypical with hyperchromasia and frequent nucleoli. The distinction of STAS from artifacts was done in the following way. Tumor floaters were favored, by the presence of clusters of cells often randomly scattered over tissue and at the edges of the tissue section. Presence of jagged edges of tumor cell clusters suggested tumor fragmentation or edges of a knife cut during specimen processing rather than STAS. Linear strips of cells that were lifted off of alveolar walls also favored the presence of artifact. Identification of tumor cells distant from the main tumor was regarded as an artifact unless intraalveolar tumor cells could be demonstrated in a continuum of airspaces containing intraalveolar tumor cells back to the tumor edge.
According to the International Association for the Study of Lung Cancer, American Thoracic Society, and European Respiratory Society histological classification, the percentage of each histologic pattern—lepidic, acinar, papillary, solid, and micropapillary—was recorded in 5% increments and tumors were classified by their predominant pattern.1 (link) Each histologic pattern was considered present in the tumor when it comprised ≥5% of the overall tumor.7 (link) Presence of visceral pleural, lymphatic, and vascular invasion was also recorded.
Publication 2015
Atelectasis Blood Vessel Carbon Black Cell Nucleolus Cell Nucleus Cells Cytoplasm Cytoplasmic Granules Europeans Lung Lung Cancer Macrophage Macrophages, Alveolar Microscopy Neoplasms Non-Smokers Pathologists Patients Pigmentation Pleura, Visceral Respiratory Rate Snup Syncope Tissues Vision

Most recents protocols related to «Pigmentation»

Example 6

A blue-to-green color-change writing composition according to certain embodiments of the invention herein is shown in Table 6. The erasable writing composition is formed by combining stearic acid, stearyl alcohol, phenolic resin, a mineral filler, leuco dye, and a (permanent) dry pigment.

TABLE 6
Blue-to-Green Color-Change Writing Composition
Weight
ComponentGramsPercentage (wt %)
stearic acid7540.76086957
stearyl alcohol7540.76086957
Mineral filler (Ultrex 96105.434782609
(BASF) calcined clay)
phenolic resin (Durez 32420)105.434782609
Leuco dye (Copikem Cyan 39)42.173913043
Dry pigment (Fluorescent105.434782609
Green Pigment)
TOTAL184.00100

Patent 2024
Clay Cyan 39 Ethanol Minerals phenol-formaldehyde resin Pigmentation stearic acid stearyl alcohol
Not available on PMC !

Example 18

Lines were raised and maintained following standard literature practice and in accordance with the Guide for the Care and Use of Laboratory Animals provided by the University of Southern California. Fish samples were part of a protocol approved by the IACUC (permit number: 12007 USC).

Transgenic FlipTrap Gt(desm-Citrine) ct122a/+ line is the result of previously reported screen, Tg(kdrl:eGFP)s843 line was provided by the Stainier lab (Max Planck Institute for Heart and Lung Research). The Tg(ubi:Zebrabow) line was a kind gift from Alex Schier. Controllable recombination of fluorophores was obtained by crossing homozygous Tg(ubi:Zebrabow) adults with a Tg(hsp70I:Cerulean-P2A-CreERT2) line. Embryos were raised in Egg Water (60 μg/ml of Instant Ocean and 75 μg/ml of CaSO4 in Milli-Q water) at 28.5° C. with addition of 0.003% (w/v) 1-phenyl-2-thiourea (PTU) around 18 hpf to reduce pigment formation.

Zebrafish samples with triple fluorescence were obtained by crossing Gt(desm-Citrine)ct122a/+ with Tg(kdrl:eGFP) fish followed by injection of 100 μg per embryo of mRNA encoding H2B-Cerulean at one cell stage as described in previous work29. Samples of Gt(desm-Citrine)ct122a/+;Tg(kdrl:eGFP); H2B-Cerulean were imaged with 458 nm laser to excite Cerulean, Citrine and eGFP and narrow 458-561 nm dichroic for separating excitation and fluorescence emission.

Patent 2024
Adult Animals, Laboratory Animals, Transgenic Cells Embryo Fishes Fluorescence Heart Homozygote Institutional Animal Care and Use Committees Lung Phenylthiourea Pigmentation Recombination, Genetic RNA, Messenger Zebrafish
Not available on PMC !

Example 1

Adult fish were raised and maintained as described in [28] and in strict accordance with the recommendations in the Guide for the Care and Use of Laboratory Animals by University of Southern California, where the protocol was approved by the Institutional Animal Care and Use Committee (IACUC) (Permit Number: 12007 USC). Transgenic FlipTrap Gt(desm-citrine)ct122a/+ line was obtained from a previously described screen in the lab [23], Tg(kdrl:eGFP)s843 line [24] was provided by the Stainier lab, and Tg(ubiq:membrane-Cerulean-2a-H2B-tdTomato) line was generated by injecting a construct containing tol2 transposable elements flanking the ubiquitin promoter, coding sequence for membrane localized cerulean, a short sequence encoding the ribosome-skipping peptide of Thosea asigna virus (2a) followed by H2B-tdTomato. Upon crossing appropriate adult lines, the embryos obtained were raised in Egg Water (about 60 μg/ml of Instant Ocean and about 75 μg/ml of CaSO4 in Milli-Q water) at about 28.5° C. with addition of about 0.003% (w/v) 1-phenyl-2-thiourea (PTU) about 18 hpf to reduce pigment formation [28].

Patent 2024
Adult Animals, Laboratory Animals, Transgenic DNA Transposable Elements Embryo Fishes Institutional Animal Care and Use Committees LINE-1 Elements Open Reading Frames Peptides Phenylthiourea Pigmentation Ribosomes tdTomato Tissue, Membrane Ubiquitin Virus Zebrafish
Not available on PMC !

Example 8

327 parts of the hydroxy-containing acrylic resin solution (R-2) (solids content: 180 parts), 360 parts of deionized water, 6 parts of Surfynol (registered trademark) 104A (trade name, produced by Evonik Industries AG, an antifoaming agent, solids content: 50%), and 250 parts of Barifine BF-20 (trade name, produced by Sakai Chemical Industry Co., Ltd., barium sulfate powder, average particle size: 0.03 μm) were placed in a paint mixer, and a glass beads medium was added thereto; followed by mixing and dispersing at room temperature for 1 hour, thereby obtaining an extender pigment dispersion (P-3) with a solids content of 44%.

Patent 2024
Acrylic Resins Antifoaming Agents Parts, Body Pigmentation Powder Sulfate, Barium

Example 1

To generate an attenuated strain of P. aeruginosa for production of alginate, the following virulence factor genes were sequentially deleted from the chromosome of the wild-type strain PAO1: toxA, plcH, phzM, wapR, and aroA. toxA encodes the secreted toxin Exotoxin A, which inhibits protein synthesis in the host by deactivating elongation factor 2 (EF-2). plcH encodes the secreted toxin hemolytic phospholipase C, which acts as a surfactant and damages host cell membranes. phzM encodes phenazine-specific methyltransferase, an enzyme required for the production of the redox active, pro-inflammatory, blue-green secreted pigment, pyocyanin. wapR encodes a rhamnosyltransferase involved in synthesizing O-antigen, a component of lipopolysaccharide (LPS) of the outer membrane of the organism. aroA encodes 3-phosphoshikimate 1-carboxyvinyltransferase, which is required intracellularly for aromatic amino acid synthesis. Deletion of aroA from the P. aeruginosa genome has previously been shown to attenuate the pathogen. Each gene was successfully deleted using a homologous recombination strategy with the pEX100T-Not1 plasmid. The in-frame, marker-less deletion of these five gene sequences was verified by Sanger sequencing and by whole genome resequencing (FIG. 1 and FIG. 8). This engineered strain was designated as PGN5. The whole genome sequence of PGN5 has been deposited to NCBI Genbank with an accession number of CP032541. All five in-frame gene deletions were detected and validated to be the deletion as designed using PCR (FIG. 7).

To verify gene deletion and attenuation of the PGN5 strain, the presence of the products of the deleted genes was measured and was either undetectable, or significantly reduced in the PGN5 strain. To test for the toxA gene deletion in PGN5, a Western blot analysis was performed for the presence of Exotoxin A in the culture medium. Exotoxin A secretion was detected in wild-type PAO1 control, but not in the PGN5 strain (FIG. 2A). To confirm the loss of plcH, hemolysis was assessed on blood agar. The hemolytic assay was carried out by streaking PAO1, PGN5, P. aeruginosa mucoid strain VE2, and a negative control, Escherichia coli strain BL21 on blood agar plates. A clear zone was observed surrounding PAO1 and VE2 cell growth, indicating complete (β-) hemolysis (FIG. 2B). In contrast, the blood agar remained red and opaque surrounding PGN5 and BL21 growth, indicating negligible or no hemolytic activity in these strains (FIG. 2B). To assess for deletion of phzM, the amount of pyocyanin secreted by PAO1 and PGN5 was extracted and measured. The amount of pyocyanin detected was significantly reduced in PGN5 (FIG. 2C). In fact, the difference in pigment production between PAO1 and PGN5 was immediately apparent on agar plates (FIG. 3A-3B). To test for wapR gene deletion, an LPS extraction was performed, followed by silver-stained SDS-PAGE and Western blot on the following strains: PAO1, PGN4 (PGN5 without aroA deletion), VE2, and PAO1wbpL, which serves as a negative control due to a deletion in the O-antigen ligase gene, and thus produces no O-antigen. The presence of O-antigen was detected in PGN4, but the level of LPS banding was significantly reduced compared to the LPS banding profile observed in PAO1 and VE2 (FIG. 2D). Lastly, to test for aroA deletion, ELISA was performed to detect the presence of 3-phosphoshikimate 1-carboxyvinyltransferase in cell lysates prepared from PAO1 and PGN5. The ELISA results showed that the amount of 3-phosphoshikimate 1-carboxyvinyltransferase was significantly reduced in PGN5, compared to that in PAO1 (FIG. 2E). Additionally, the deletion of aroA resulted in slower growth in the PGN5 strain, a growth defect that was restored with the addition of 1 mg/mL of aromatic amino acids (W, Y, F) to the culture medium (data not shown).

Patent 2024
1-Carboxyvinyltransferase, 3-Phosphoshikimate Agar Alginate Anabolism Aromatic Amino Acids Biological Assay BLOOD Cardiac Arrest Chromosomes Culture Media Deletion Mutation Enzyme-Linked Immunosorbent Assay Enzymes Escherichia coli Exotoxins Gene Deletion Genes Genetic Markers Genome Hemolysis Homologous Recombination Inflammation Ligase Lipopolysaccharides Methyltransferase O Antigens Oxidation-Reduction Pathogenicity Peptide Elongation Factor 2 Phenazines Phospholipase C Pigmentation Plasma Membrane Plasmids Protein Biosynthesis Pseudomonas aeruginosa Pyocyanine Reading Frames SDS-PAGE secretion SERPINA3 protein, human Silver Strains Surface-Active Agents Tissue, Membrane Toxins, Biological Virulence Factors Western Blot Western Blotting

Top products related to «Pigmentation»

Sourced in United States, Germany, Switzerland, Sao Tome and Principe
1-phenyl-2-thiourea (PTU) is a chemical compound used in laboratory settings. It serves as a core functional component in various research and analytical applications. The product specifications and technical details are available upon request.
Sourced in United States, Germany, Switzerland, United Kingdom, Australia
1-phenyl-2-thiourea is a chemical compound used as a laboratory reagent. It is a crystalline solid with a melting point of approximately 176°C. The compound is soluble in various organic solvents. No further details about its core function or intended use are provided.
Sourced in Japan, United States, Germany, Switzerland, China, United Kingdom, Italy, Belgium, France, India
The UV-1800 is a UV-Visible spectrophotometer manufactured by Shimadzu. It is designed to measure the absorbance or transmittance of light in the ultraviolet and visible wavelength regions. The UV-1800 can be used to analyze the concentration and purity of various samples, such as organic compounds, proteins, and DNA.
Sourced in United States, Germany, United Kingdom, China, France, Switzerland, Italy, Macao, Japan
Tricaine is a laboratory equipment product manufactured by Merck Group. It is a chemical compound commonly used as an anesthetic for fish and amphibians in research and aquaculture settings. Tricaine functions by inhibiting sodium ion channels, resulting in a reversible state of unconsciousness in the organism.
Sourced in United States, Germany, Spain, China, United Kingdom, Sao Tome and Principe, France, Denmark, Italy, Canada, Japan, Macao, Belgium, Switzerland, Sweden, Australia
MS-222 is a chemical compound commonly used as a fish anesthetic in research and aquaculture settings. It is a white, crystalline powder that can be dissolved in water to create a sedative solution for fish. The primary function of MS-222 is to temporarily immobilize fish, allowing for safe handling, examination, or other procedures to be performed. This product is widely used in the scientific community to facilitate the study and care of various fish species.
Sourced in United States, Germany
N-phenylthiourea is a chemical compound used as a laboratory reagent. It is a crystalline solid that is soluble in organic solvents. N-phenylthiourea is commonly used in analytical and organic chemistry applications, but its specific core function is not provided in order to maintain an unbiased and factual approach.
Sourced in United States, Germany
N-phenylthiourea (PTU) is a chemical compound that serves as a laboratory reagent. It has the chemical formula C6H6N2S. PTU is used for various analytical and experimental purposes in research and development settings, but a detailed description of its core function is not available while maintaining an unbiased and purely factual approach.
Sourced in United States
Phenylthiourea is a chemical compound used in various laboratory applications. It serves as a reagent and can be used in analytical procedures. The specific core function of phenylthiourea is to act as a sensitive indicator for the detection of certain elements or compounds in analytical testing.
Sourced in United States, Macao
Phenylthiourea (PTU) is a chemical compound used in laboratory settings. It serves as a core function in various analytical and research applications.
Sourced in United Kingdom, United States, Germany, Japan
GF/F filters are a type of laboratory filtration equipment designed to remove very small particles from liquid samples. They are composed of glass fiber and have a nominal pore size of 0.7 micrometers, making them suitable for filtering a wide range of materials.

More about "Pigmentation"

Pigmentation is the coloration of the skin, hair, and other tissues, resulting from the deposition of pigments such as melanin.
It is a complex biological process involving various factors, including genetics, hormones, and environmental exposures.
Pigmentation plays a crucial role in protecting the skin from UV radiation, and its disorders can lead to conditions like albinism, vitiligo, and melasma.
Understanding the mechanisms of pigmentation is essential for addressing cosmetic and medical concerns related to skin tone and appearance.
The MeSH term 'Pigmentation' provides a comprehensive overview of the biological and clinical aspects of this topic, serving as a valuable resource for researchers and clinicians in the field of dermatology and cosmetology.
This includes insights into the role of 1-phenyl-2-thiourea (PTU), a commonly used chemical compound in pigmentation research.
PTU, also known as 1-phenyl-2-thiourea, UV-1800, Tricaine, MS-222, N-phenylthiourea, and Phenylthiourea, is a widely used agent in the study of pigmentation.
It is particularly effective in inhibiting the enzyme tyrosinase, which is essential for the production of melanin, the primary pigment in the skin, hair, and eyes.
In addition to PTU, other key subtopics in the field of pigmentation include the role of genetics, hormones, and environmental factors in regulating skin, hair, and tissue coloration.
Researchers often utilize GF/F filters to isolate and analyze pigment-containing cells and tissues, providing valuable insights into the underlying mechanisms of pigmentation.
By leveraging the insights gained from the MeSH term description and the powerful tools offered by PubCompare.ai, researchers and clinicians can delve deeper into the complex and fascinating world of pigmentation, unlocking new discoveries and advancements in the fields of dermatology and cosmetology.