All patients involved in this study fulfilled the ACR/EULAR classification criteria for SSc43 (link). Plasma samples from all patients and healthy individuals were prepared from the whole blood collected into commercially available EDTA-treated tubes. For the cross-sectional analysis, plasma samples were obtained from 92 Caucasian patients with systemic sclerosis (SSc) and 92 age- and sex-matched Caucasian healthy controls. For the longitudinal analysis, plasma samples were obtained prospectively at baseline, and 1, 6, and 12 months thereafter from 30 Caucasian patients with SSc-ILD with active alveolitis without pulmonary arterial hypertension who underwent a routine 6-month (n = 16) or 12-month (n = 14) treatment with i.v. cyclophosphamide (CPA, 500 mg/m2 monthly). Active alveolitis was defined as the presence of areas of ground-glass attenuation on high-resolution computed tomography (HRCT) and reduced levels of diffusing lung capacity for carbon monoxide (DLCO) and/or forced vital capacity (FVC), as described elsewhere44 (link). Other SSc-related clinical features were assessed according to generally accepted definitions and recorded, such as the presence of pulmonary arterial hypertension, renal, cardiac and gastrointestinal involvement, Raynaud's phenomenon, and digital ulcers45 (link). Skin involvement was evaluated using the modified Rodnan skin score (mRSS)46 (link). Disease activity was determined by the European Scleroderma Study Group (ESSG) SSc activity score47 (link). Pulmonary function tests (PFT) were routinely performed using standard methods, in accordance with the ATS recommendations48 (link). The DLCO was measured by a single-breath method using a gas mixture of 0.2% CO and 8% helium, with correction for hemoglobin. Peripheral oxygen saturation (SpO2) was measured by a handheld pulse oximeter (CR-100, Noramedica, Czech Republic). In the longitudinal analysis PFTs were performed at baseline, and 6 and 12 months thereafter, and the results are expressed as a percentage of the normal predicted values based on the patient’s sex, age, and height. The research was confirmed by the local ethics committee at the Institute of Rheumatology in Prague, and each patient signed an informed consent form. All methods were performed in accordance with the relevant guidelines and regulations.
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