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Laser Scanning Microscopy

Laser Scanning Microscopy (LSM) is a powerful imaging technique that uses a focused laser beam to scan a specimen and capture high-resolution, three-dimensional images.
This non-invasive method allows researchers to visualize and analyze the intricate structures and dynamics of cells, tissues, and organisms with exceptional detail.
LSM enables the study of a wide range of biological processes, from cellular signaling to tissue morphology, contributing to advancements in fields such as cell biology, neuroscience, and developmental biology.
With its ability to provide optical sectioning and minimize phototoxicity, LSM has become an indispensable tool for life science research, offering insights that are critical for understanding complex biological systems.
However, optimizing LSM protocols can be a challeng, requiring carefull selection of parameters and comparison to existing methods.
PubCompare.ai is an AI-driven platform that streamlines this process, helping researchers easily locate the best protocols from literature, pre-prints, and patents, while leveraging AI-driven comparisons to enhance reproducibility and research accuracy.
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Most cited protocols related to «Laser Scanning Microscopy»

Young (1 month old) and adult (> 4 months old) mice expressing YFP in a small subset of cortical neurons (YFP-H line29 (link)) were used in all the experiments. Young mice were trained on the single-seed reaching task for up to 16 days and displayed a stereotypical learning curve (Fig. 1b). Naive adult mice and mice that had been previously trained with the single-seed reaching task in adolescence were trained with either the same reaching task or a novel capellini handling task for up to 8 days (see Methods). Apical dendrites of layer V pyramidal neurons, 10–100 μm below the cortical surface, were repeatedly imaged in mice under ketamine–xylazine anaesthesia with two-photon laser scanning microscopy. Spine dynamics in the motor cortex and other regions were followed over various intervals. Imaged regions were initially guided by stereotaxic measurements. In 14 mice, intracortical microstimulation (see Methods) was performed at the end of repetitive imaging to determine the location of acquired images relative to the functional forelimb motor map (Supplementary Fig. 2). In total, 32,079 spines from 209 mice were tracked over 2–4 imaging sessions, with 121 mice imaged twice, 79 mice three times and 9 mice imaged four times. Spine formation and elimination rates in each mouse were determined by comparing images of the same dendrites acquired at two time points; all changes were expressed relative to the total number of spines seen in the initial images. The number of spines analysed and the percentage of spine elimination and formation under various experimental conditions are summarized in Supplementary Table 1. To quantify spine size, calibrated spine head diameters were measured over time30 (link) (Supplementary Notes). All data are presented as mean ± s.d., unless otherwise stated. P-values were calculated using the Student's t-test. A non-parametric Mann–Whitney U-test was used to confirm all conclusions.
Publication 2009
Adult Anesthesia Cortex, Cerebral Dendrites Head Ketamine Laser Scanning Microscopy Learning Curve Mice, Laboratory Motor Cortex Neurons Pyramidal Cells Stereotypic Movement Disorder Upper Extremity Vertebral Column Vision Xylazine
Male Sprague-Dawley rats, 270 to 310 g in mass, were used in accordance with both the local IACUC and NIH regulations. Detailed surgical procedures are described elsewhere (Helmchen and Kleinfeld, 2008 (link); Shih et al., 2008 ). In brief, anesthesia was maintained with 1 to 2 % (v/v) isoflurane in 30 % (v/v) oxygen and 70 % (v/v) nitrous oxide. Cranial windows, 4 × 4 mm in size and centered at 4.5 mm lateral and −3.0 mm caudal, were constructed as described previously (Kleinfeld et al., 2008 ). Images were collected using a two-photon laser scanning microscope of local design (Tsai et al., 2002 ; Tsai et al., 2003 (link); Tsai and Kleinfeld, 2009 ) that was controlled by MPScope software (Nguyen et al., 2006 (link); Nguyen et al., 2009 ). The vasculature was visualized by circulating 2MDa fluorescein-dextran (FD2000S, Sigma), as described previously (Schaffer et al., 2006 ). The flow of RBCs is visualized as dark objects against the fluorescent plasma background. A 40x magnification water-dipping objective (Olympus America, Center Valley, PA) was used to obtain the line-scan data. Scans were collected along the centerline of each vessel over a length of 70 to 250 pixels, which spanned 7 to 76 μm, at a scan rate of 1.6 kHz per line.
Publication 2009
Anesthesia Blood Vessel Cranium Erythrocytes fluorescein-dextran Institutional Animal Care and Use Committees Isoflurane Laser Scanning Microscopy Males Operative Surgical Procedures Oxide, Nitrous Oxygen Plasma Radionuclide Imaging Rats, Sprague-Dawley
Expression of mTurquoise and its variants in E. coli was measured at 37 °C using a fluorescence microplate reader, as described9 (link), except that we used the pRSET plasmids for expression without induction. For brightness studies in mammalian cells, mTurquoise variants were excised from the pRSET vector using NheI and BsrGI and ligated into the CFP-2A-SYFP2 co-expression vector that was partially digested with NheI and BsrGI, and brightness analysis was performed as described10 (link) 2 days after transfection. For expression of mTurquoise variants in HeLa cells, we replaced the fluorescent protein from pSCFP3A-C1 with the mTurquoise variant using AgeI/BsrGI restriction sites. Photostability was measured in living HeLa cells by continuous illumination with light from a 100 W mercury lamp that was passed through a 436/20-nm excitation filter and reflected onto the sample with a 455DCLP dichroic mirror (Chroma). A ×63 oil immersion objective (Plan Apochromat NA 1.4) was used and a light intensity of 1.4–1.6 W cm−2 was determined when a ND1.3 grey filter was used, whereas a light intensity of 22–23 W cm−2 was determined without grey filter. To evaluate photostability under laser scanning conditions, we used HeLa cells expressing CFP variants tagged with histone 2A. A Nikon A1 laser scanning microscope was used and cells were imaged using a Nikon Plan Apo VC ×60 oil objective and a zoom factor of 6. Excitation was at 443 nm, and fluorescence was passed through a completely opened pinhole and a 482/35-nm bandpass filter. All parameters, including detector gain, laser intensity, and scan speed were identical between samples. Spectral imaging microscopy was performed on single cells as described10 (link).
Publication 2012
A-factor (Streptomyces) Cells Cloning Vectors Escherichia coli factor A Fluorescence HeLa Cells Histone H2a Laser Scanning Microscopy Light Mammals Mercury Microscopy Plasmids Proteins Radionuclide Imaging Submersion Transfection
rAAVs (AAV2/1; synapsin-1 promoter) were injected into the primary somatosensory cortex (S1) of 2–3 week old C57Bl/6Crl wild-type mice. Two weeks after injection, mice were anaesthetized with 2% isoflurane, and a 1.5mm circular craniotomy was performed over the injection site as previously described 43 (link). Cells were recorded with a patch pipette containing (in mM): 10.0 KCl, 140 K-gluconate, 10.0 HEPES, 2.0 MgCl2, 2.0 CaCl2, 0.05 Alexa 594, pH 7.25, 290 mOsm. For recording and stimulation a MultiClamp 700B amplifier (Molecular Devices, Sunnyvale, California) was used. In whole cell mode, action potentials were evoked by 2–5 ms long current injections; in cell attached mode currents up to 100 nA were necessary. The Ti:Sapphire laser (Mai Tai, Spectro-Physics, CA) was tuned to 910 nm for GCaMP3 imaging. Fluorescence images were simultaneously acquired using a custom-built, two-photon laser-scanning microscope equipped with a 40X, 0.8 NA objective (Olympus, Tokyo, Japan). Frame scans were acquired at 15 Hz (256×32 pixels) for a period of 3 seconds.
For imaging awake, head-fixed running mice, virus injection and surgery were identical to the anesthetized condition, except that the injection and craniotomy were performed over the primary whisker and forelimb motor area (M1). In addition, local (Marcaine) and general (Buprenorphine, 0.1mg/kg IP and Ketoprofen, 5mg/kg SC) anesthetics were administered. After full recovery on a heating pad the animals were head restrained, but allowed to run freely on a linear treadmill. Action potentials were recorded using a loose-seal cell attached configuration with patch pipettes filled with buffer (in mM: 125 NaCl, 2.5 KCl, 25.0 glucose, 10.0 HEPES, 2.0 CaCl2, 2.0 MgSO4, 0.05 Alexa 594; pH 7.4, 285 mOsm), and signals were amplified using a MultiClamp 700B (Molecular Devices, Sunnyvale, California). To confirm the identity of recorded neurons, each recording was terminated by breaking into the cell and filling with red pipette solution. During the imaging sessions the animals were kept alert by sporadic acoustic stimuli (clapping) or by presenting a pole or mild air puffs to the whisker field. Images were acquired at frame rates of 4–8 Hz at a resolution of 256×512 pixels using a 16X, 0.8 NA water immersion objective (Nikon USA, Lewisville, TX). All images acquired while awake were corrected for movement artifacts using the ImageJ plug-in TurboReg (http://bigwww.epfl.ch/thevenaz/turboreg/). ΔF/F was calculated by subtracting the baseline fluorescence level (F0, 35th percentile of total fluorescence) from the actual fluorescence level and normalized to F0.
Publication 2009
Acoustics Action Potentials Alexa594 Anesthetics Animals Buffers Buprenorphine Cells Craniotomy Fluorescence Forelimb gluconate Glucose Head HEPES Isoflurane Ketoprofen Laser Scanning Microscopy Magnesium Chloride Marcaine Medical Devices Mice, Inbred C57BL Motor Cortex Movement Mus Neoplasm Metastasis Neurons Operative Surgical Procedures Phocidae Radionuclide Imaging Reading Frames Sapphire Sodium Chloride Somatosensory Cortex, Primary Submersion Sulfate, Magnesium Synapsin I Vibrissae Virus
hMSCs, provided by the Tulane Center for Gene Therapy through a grant from NCRR of the NIH (grant P40 RR0 17 447) were used at passage 3 for all experiments. hMSCs were expanded using growth media (low-glucose Dulbecco’s modified Eagle’s medium (DMEM, Invitrogen) supplemented with 10% fetal bovine serum (FBS, Invitrogen). hMSCs were encapsulated by resuspension in monomer solution containing a 5 wt% PEG and peptide in a stoichiometrically balanced ratio and 2.2mM (0.05 wt%) I2959 in PBS at a density of 300000 cells mL−1. Suspensions, in 6mm × 1mm circular molds, were exposed to 7–10 mW cm−2 352-nm centered light (40W black-light blue lamp from Sankyo Deiki) for 5 min. Following polymerization, hydrogel discs were removed and placed into growth media. For morphology and viability experiments, gels were incubated for 30 min in PBS with 2µM calcein 4mM ethidium homodimer (Live/Dead cytotoxicity kit from Invitrogen). Confocal images were taken using a Zeiss 510 laser scanning confocal microscope. Image analysis and cell-area calculations were performed using MetaMorph software for 3D stacks flattened to 2D images. A minimum of three spots on three different hydrogels was used and standard error is reported relative to individual cells. A one-way ANOVA and Tukey’s test with α=0.05 were used to determine statistical differences among the data sets.
Publication 2009
Cells CM-352 Culture Media Cytotoxin Eagle ethidium homodimer Exanthema fluorexon Fungus, Filamentous Gels Glucose Hydrogels Laser Scanning Microscopy Light neuro-oncological ventral antigen 2, human Peptides Polymerization Therapy, Gene

Most recents protocols related to «Laser Scanning Microscopy»

Tribological tests were performed using a reciprocating friction and wear testing machine SRV IV (Co. Optimol Instruments Prüftechnik GmbH). A cylinder on plate geometry was used, as well as a sphere on plate geometry (Fig. S1a and b, ESI). The average roughness Ra of the cylinder was 0.26 μm with 15 mm in diameter and 22 mm in length providing a contact length of 15 mm (standard test specimen from Optimol Instruments Prüftechnik GmbH). The balls had an average roughness of Ra = 0.26 μm and 12.7 mm diameter. Before the test, the polymeric specimen was attached on a 100Cr6 steel plate with 24 mm diameter. The tests were performed at 24 ± 1 °C, relative humidity of 30 ± 5%, reciprocating frequency of 50 Hz or 20 Hz, an initial contact pressure of 7.2 N mm−2 for the cylinder on plate geometry and 50.5 N mm−2 for the sphere on plate geometry with an applied load of 10 N. The length of stroke from each reciprocating cycle was 1 mm. Each test was carried out for 30 min. For more information on the chosen parameters, see Table S1 (ESI). COF was evaluated by averaging the COF received from the software on the last 50 cycles of each measurement. For every specimen three measurements were carried out. Wear was evaluated for the specimens using a ball on plate geometry and was measured with a VK-9710K Color 3D-Laser scanning microscope (Co. Keyence Corporation).
For friction and wear tests with applied electrical field, the parameters were adjusted to a reciprocating frequency of 1 Hz and an applied load of 10 N. A ball on plate geometry was chosen as depicted in Fig. S1c (ESI). A rectangular current collector loop in a distance of 1.0 ± 0.1 cm was melted on the surface of the specimen by heating. A VersaSTAT 3F Potentiostat Galvanostat (Co. Ametek Scientific Instruments) was used for applying electrical fields.
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Publication 2023
A-Loop Cerebrovascular Accident Electricity Friction Humidity Laser Scanning Microscopy Optimol Polymers Pressure Steel
All surface resistance measurements were performed with a 2400 Sourcemeter (Co. Keithley Instruments) with a 4-wire sense mode configuration in combination with a custom made 4-point measuring probe. The cylindrical probe tips were arranged in line with a diameter of 0.8 mm and a distance between the probes of 2.1 mm. A constant current was applied through the outer probe tips to the sample. The voltage drop from the outer to the inner probe tips was used for resistance calculation based on a method described by Schroder et al.56 Each measurement was performed with a constant current in the range of 1 μA to 1 mA at 2.1 V for 200 s of measurement time. The average value of 6 measurements at different locations on the sample surface is reported for each of the samples.
Attenuated total reflection Fourier transformed infrared spectroscopy (ATR-FTIR) was recorded with a 1.9 cm−1 spectral resolution on a 670 FT-IR spectrometer (Co. Varian Inc. (now: Agilent Technologies)). The assignment of measured vibrations were supported by DFT-based calculations on a D3(BJ)-BP86-def2-SVP level of theory.57–61 Deviations to the measured spectra were described by Benavides-Garcia and Monroe.62 All calculations were carried out using the ORCA computational chemistry program.63,64 Raman spectra were recorded on an inVia confocal (Co. Renishaw) with an excitation wavelength of 532 nm, 3 times for each specimen with 20 s exposure time. Hardness testing was performed using a Fischerscope H100C XYp Nanoindenter (Co. Helmut Fischer GmbH) using a Vickers diamond indenter. After contact with the surface, the indenter was approached into specimens at a constant rate of 300.00 mN/60 s until 150 mN of force was reached and withdrawn from the surface at the same rate as loading. At least 12 indentations were performed for each specimen and the average value was reported. Surface roughness measurements and optical imaging were performed using a VK-9700 Color 3D-Laser scanning microscope (Co. Keyence Corporation). For each sample, at least five randomly selected areas of the surface were measured and the surface roughness Ra and surface depth Rz were determined. High-resolution images of the composite material were taken using a scanning electron microscope (SEM, S-3400N, Co. Hitatchi Science Systems, Ltd) and spectral maps for sulfur and phosphorus were prepared using energy dispersive X-ray spectroscopy (EDX). The samples were fractured after storage in liquid nitrogen for at least 3 h and the exposed surface was coated with a thin platinum layer using a high vacuum platinum sputter at low voltage (brittle fractures). High-resolution transmission electron microscopy (FEI, Talos 120C, Co. Thermo Fisher Scientifics) images were taken of selected polymer compounds. Therefore, very thin lamellae were sectioned with a diatome diamond knife (Cryo-Mikrotomy, Co. Reichert-Jung Ultracut E and RMC CR-X Cryoattachment) at a temperature of −120 °C. The freshly microtomed sample surfaces were subsequently measured by AFM (MultiMode 8, Co. Brucker). The ultrathin sections (about 60 nm) were collected and used for TEM measurements. By evaluating the distribution of the added liquid and solid lubricants in the bulk material, the tribological mechanisms leading to self-lubrication will be analyzed.
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Publication 2023
Diamond Dietary Fiber Fracture, Bone Laser Scanning Microscopy Lubrication Microtubule-Associated Proteins Nitrogen Orcinus orca Phosphorus Platinum Polymers Reflex Scanning Electron Microscopy Spectroscopy, Fourier Transform Infrared Spectrum Analysis Sulfur Transmission Electron Microscopy Vacuum Vibration
The mitophagy detection kit was used to detect mitophagy in NPCs. The NPCs were seeded in the logarithmic growth period on a 6-well plate covered with cell slides at 2 × 105 per well. The NPCs were cultured at 37 °C overnight under 5% CO2 saturated humidity and treated as depicted above. Next, the cells were incubated with 100 nM Mtphagy Dye working solution for 30 min at 37 °C for mitochondrial probe staining. After that, the cells were washed twice with PBS and subjected to IL-1β for 24 h. After culturing for 24 h, 1 μmol/L LYSO DYE working solution was added to the cells and then incubated for 30 min at 37 °C. Finally, the NPCs were observed under a Laser Scanning Microscope (LSM) (ZEISSLSM780, Germany).
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Publication 2023
Cells Humidity Interleukin-1 beta Laser Scanning Microscopy Mitochondrial Inheritance Mitophagy Mtphagy Dye
Live imaging of microglial processes was performed on 250 µm coronal brain slices from Nf1 ± or Nf1flox/wt mice and their WT littermates using a custom-built two-photon laser-scanning microscope (Till Photonics, Gräfelfing, Germany). EGFP or eYFP was excited by a Chameleon Ultra II laser (Coherent, Dieburg, Germany) at a wavelength of 940 nm. A 40X water-immersion objective (NA 0.8, Olympus, Hamburg, Germany) was used, with scanned 60 µm thick z-stacks and a step size of 3 µm covering a field of 320 × 320 µm. Laser lesions were set to 40 µm under the slice surface in the cortex by focusing the laser beam, set to a wavelength of 810 nm and to maximum power in the selected imaging volume, and scanned until autofluorescence of the injured tissue was visible. This procedure resulted in lesions of ~ 20 µm in diameter in the middle of the observed region. For the recording of microglia surveillance, no laser lesion was performed. IGOR Pro 6.37 (Lake Oswego, USA) was used for data analysis as in Davalos et al. [13 (link)] and Madry et al. [42 (link)]. The sequences of 3D image stacks were converted into sequences of 2D images by a maximum intensity projection algorithm. Grayscale images were first converted into binary form using a threshold. For quantification of laser lesion-induced movements, microglial response to focal lesion was defined as EGFP + pixel count in a proximal circular region 45 µm around the lesion site over time (Rx(t)). Distal fluorescence of the first time point was determined within a diameter of 45 µm to 90 µm around the lesion site for normalization (Ry(0)). Microglial responses were represented as R(t) = (Rx(t)-Rx(0))/Ry(0). For the quantification of baseline surveillance, cells of interest were individually selected by manually drawing a region of interest (ROI) around an area including all their process extensions throughout the 20 min movie and erasing data around that ROI. Starting with the second frame, we subtracted from each binarized frame the preceding frame and counted the number of pixels < 0 (retracting = PR) and > 0 (extending = PE). The surveillance index for each frame is then given by the sum of PR ad PE. The surveillance index of a given cell was then calculated by averaging the indices of the first 20 images in the movie. For ramification index (RI), we used the equation RI = (peri/area)/(2*sqrt(pi/area)), where peri and area are respectively the perimeter and area of a given cell in pixels. For the quantification of these two parameters, the ImageAnalyzeParticles operation in IGOR Pro 6.37 was applied on binarized images in which all analyzed microglia were manually examined and, if necessary, somata and processes connected.
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Publication 2023
Brain Carisoprodol Cells Chameleons Cortex, Cerebral Fluorescence Laser Scanning Microscopy Microglia Movement Mus Perimetry Reading Frames Submersion Tissues
Fibroblast were grown on Y-micropatterned fibronectin-coated CYTOO plate (CYTOO SA) (size 700 µm2), using company-recommended protocol. Briefly, standard fibroblast cultures were maintained in DMEM/F12 medium (Thermo Fisher Scientific) supplemented with 15% FBS. For the assay, cells of confluent bottles were collected by gentle trypsinization and diluted to a concentration of ~30,000 cells/ml. 100 µl (~3000 cells) were homogeneously dispensed into each well. Cells were fixed within 6 h after adhesion, using 3.7% paraformaldehyde. Staining procedure involved 2 washes in PBS, permeabilization using 0.1% Triton X100 and staining with AlexaFluorTM 594 Phalloidin (Thermo Fisher Scientific) according to manufacturer’s instructions. Cells were imaged using laser scanning confocal microscope Carl Zeiss LSM700 equipped with a 40× (1.3 NA) Plan-Neofluar objective. Voxel size: 0.1563 × 0.1563 × 0.9474 µm3.
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Publication 2023
Biological Assay Cells Fibroblasts FN1 protein, human Laser Scanning Microscopy paraform Phalloidine Triton X-100

Top products related to «Laser Scanning Microscopy»

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The LSM 710 is a laser scanning microscope developed by Zeiss. It is designed for high-resolution imaging and analysis of biological and materials samples. The LSM 710 utilizes a laser excitation source and a scanning system to capture detailed images of specimens at the microscopic level. The specific capabilities and technical details of the LSM 710 are not provided in this response to maintain an unbiased and factual approach.
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The LSM 780 is a laser scanning microscope developed by Zeiss. It is designed for high-resolution imaging and analysis of biological samples. The instrument utilizes advanced confocal technology to provide detailed, three-dimensional images of specimens.
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The LSM 510 is a laser scanning microscope (LSM) developed by Zeiss. It is designed for high-resolution imaging and analysis of biological samples. The LSM 510 utilizes a laser light source and a scanning mechanism to capture detailed images of specimens.
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The LSM 880 is a laser scanning confocal microscope designed by Zeiss. It is a versatile instrument that provides high-resolution imaging capabilities for a wide range of applications in life science research.
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The FV1000 is a confocal laser scanning microscope designed for high-resolution imaging. It uses a focused laser beam to scan and excite fluorescent samples, capturing detailed images with improved contrast and resolution compared to traditional wide-field microscopy. The FV1000 is capable of optical sectioning, allowing for the reconstruction of three-dimensional structures from a series of two-dimensional images.
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DAPI is a fluorescent dye used in microscopy and flow cytometry to stain cell nuclei. It binds strongly to the minor groove of double-stranded DNA, emitting blue fluorescence when excited by ultraviolet light.
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The LSM 700 is a versatile laser scanning microscope designed for high-resolution imaging of samples. It provides precise control over the illumination and detection of fluorescent signals, enabling detailed analysis of biological specimens.
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DAPI is a fluorescent dye that binds strongly to adenine-thymine (A-T) rich regions in DNA. It is commonly used as a nuclear counterstain in fluorescence microscopy to visualize and locate cell nuclei.
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The LSM 700 is a confocal laser scanning microscope manufactured by Zeiss. It is designed to capture high-resolution images of biological samples. The microscope uses a laser light source and a pinhole aperture to obtain optical sections of a specimen, allowing for improved contrast and resolution compared to traditional wide-field microscopy.
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The LSM 510 META is a laser scanning confocal microscope designed for high-resolution imaging. It features a multi-track detection system that enables simultaneous acquisition of multiple fluorescent signals.

More about "Laser Scanning Microscopy"

Laser Scanning Microscopy, LSM, Confocal Laser Scanning Microscopy, CLSM, LSM 710, LSM 780, LSM 510, LSM 880, FV1000 confocal laser scanning microscope, DAPI, LSM 700, LSM 700 confocal laser scanning microscope, LSM 510 META