DNA was extracted from the La Braña 1 tooth specimen with a previously published protocol2 (link). Indexed libraries were built from the ancient extract and sequenced on the Illumina HiSeq platform. Reads generated were mapped with BWA27 (link) to the human reference genome (NCBI 37, hg19) after primer trimming. A metagenomic analysis and taxonomic identification was generated with the remaining reads using BLAST 2.2.27+ and MEGAN428 (link) (Extended Data Fig. 9 and Supplementary Information ). SNP calling was undertaken using a specific bioinformatic pipeline designed to account for ancient DNA errors. Specifically, the quality of misincorporations likely caused by aDNA damage was rescaled using the mapDamage2.0 software29 (link), and a set of variants with a minimum read depth of 4 was produced with GATK30 (link). Analyses including PCA10 (link), Outgroup f316 (link) and D statistics17 (link) were performed to determine the population affinities of this Mesolithic individual (Supplementary Information ).
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Procedures
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Therapeutic or Preventive Procedure
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Tooth Extraction
Tooth Extraction
Tooth Extraction: The surgical removal of a tooth from the dental alveolus.
It may be performed for a variety of reasons, including disease, crowding, or preparation for dental prostheses.
PubCompare.ai can help you optimize your tooth extraction protocols by providing AI-driven comparisons of the latest techniques and products from the literature, preprints, and patents.
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It may be performed for a variety of reasons, including disease, crowding, or preparation for dental prostheses.
PubCompare.ai can help you optimize your tooth extraction protocols by providing AI-driven comparisons of the latest techniques and products from the literature, preprints, and patents.
Discover the best methodologies to ensure reproducibility and accuracy in your research.
Most cited protocols related to «Tooth Extraction»
DNA, Ancient
FCER2 protein, human
Genome, Human
Metagenome
Oligonucleotide Primers
Tooth Extraction
Ancient samples were extracted in a dedicated ancient DNA laboratory at the ZEM/University of Zürich in accordance with established contamination control precautions and workflows. DNA was extracted from dental calculus (G12, B17, B61, B78, P2), dentine (G12, B17, B61, B78), carious dentine (B17), abscessed alveolar bone (B78), and burial matrix (M1-M5) by phenol:chloroform extraction followed by Qiagen MinElute column purification (Supplementary Tables 10-15 ). Burial matrix and NaOCl-decontaminated dentine were tested for the presence of endogenous human DNA using targeted PCR and qPCR (Supplementary Tables 16-17 ). To optimize DNA extraction from dental calculus, five extraction buffers (A-E) and three decontamination methods were tested and compared. Two extraction buffers (A: 0.45M EDTA, 10% proteinase K; B: 0.1M EDTA, 10% proteinase K, 10mM Tris-HCl, 10mM NaCl, 2% w/v SDS, 5mM CaCl2, 40mM DTT) and three decontamination methods (2% NaOCl, 0.5M EDTA wash, none) were selected for further analysis and used in combination to produce nine DNA extracts from B61 and G12 dental calculus.
Bones
Buffers
Calculi
Chloroform
Decontamination
Dentin
DNA, Ancient
Edetic Acid
Endopeptidase K
Homo sapiens
Phenol
Sodium Chloride
Tooth Extraction
Tromethamine
The study was conducted in Kerman, the largest province of Iran that is located 895 kilometers south of the capital. The Ethical Committee of Kerman University of Medical Science approved this study with code number: 620. For convenience, we randomly selected our subjects who were the participants of Kerman Dental School Clinics and an interviewer-administered questionnaire was used to collect the data. Two Iranian dentists, fluent in English performed a forward translation. The translated text was translated back into English by two English and literature graduates. Thereafter, in one session under the supervision of the Research Center, these four people discussed and approved unanimously that the translation was the same as the original English version.
The reliability was examined by measuring internal consistency reliability and reproducibility.
Internal consistency reliability was assessed by examining internal consistency (Cronbach‘s alpha) and item-total correlation.
Reproducibility was evaluated by measuring test-retest reliability. Test-retest reliability was calculated using intraclass correlation coefficient (ICC). A sample of 60 respondents was interviewed two weeks after the first interview.
Responsiveness of an instrument is the ability to detect important changes over time. It was evaluated by calculating the effect-size (ES) and Standardized Responses Mean (SRM) by computing pre-intervention and post-intervention mean OHIP scores. They were analyzed in a subgroup of 40 patients treated with dental extraction of one painful tooth that no longer served a purpose. All these treatments were performed by an experienced dentist.
Validity refers to the extent to which the instrument measures what it is supposed to measure. The method of known-group comparison was used to determine the degree to which the OHIP was able to discriminate between mutually exclusive subgroups of subjects. It was expected that subjects with more than 25 teeth that had condition such as better self-rated oral health and less frequently referred to a dentist, and those who perceived that they did not need dental treatment, would show lower OHIP scores than those without these conditions. Construct validity was tested by using Student’s t-test and correlation coefficient (Pearson).
The reliability was examined by measuring internal consistency reliability and reproducibility.
Internal consistency reliability was assessed by examining internal consistency (Cronbach‘s alpha) and item-total correlation.
Reproducibility was evaluated by measuring test-retest reliability. Test-retest reliability was calculated using intraclass correlation coefficient (ICC). A sample of 60 respondents was interviewed two weeks after the first interview.
Responsiveness of an instrument is the ability to detect important changes over time. It was evaluated by calculating the effect-size (ES) and Standardized Responses Mean (SRM) by computing pre-intervention and post-intervention mean OHIP scores. They were analyzed in a subgroup of 40 patients treated with dental extraction of one painful tooth that no longer served a purpose. All these treatments were performed by an experienced dentist.
Validity refers to the extent to which the instrument measures what it is supposed to measure. The method of known-group comparison was used to determine the degree to which the OHIP was able to discriminate between mutually exclusive subgroups of subjects. It was expected that subjects with more than 25 teeth that had condition such as better self-rated oral health and less frequently referred to a dentist, and those who perceived that they did not need dental treatment, would show lower OHIP scores than those without these conditions. Construct validity was tested by using Student’s t-test and correlation coefficient (Pearson).
Dental Care
Dental Health Services
Dentist
Interviewers
Pain
Patients
Student
Supervision
Tooth
Tooth Extraction
We have carried out a cross-sectional analysis on 1020 Caucasian participants (365 men and 655 women) between the ages of 18 and 80 years old recruited in the Obesity, Nutrition & Information and Communication Technologies (OBENUTIC) study. OBENUTIC [52 (link)] is a case-control study carried out in the general population of the Valencia Region (East Mediterranean coast of Spain). Cases were individuals with obesity (body mass inde × (BMI) ≥ 30 kg/m2) and the controls were non-obese individuals (BMI < 30 kg/m2) recruited from the same location and without pairing for age and sex. Cases and controls were apparently healthy individuals recruited through advertisements in shopping malls, housewives’ associations, cultural associations and other types of groups from the general population, public and private institutions, educational centres, home contacts and a few primary health care centres. The exclusion criteria were being pregnant or breast-feeding, suffering from some type of infectious/contagious disease, invalidating physical or psychological diseases, cancer diagnosis, thyroid alterations, Cushing disease, have conditions that could alter gustatory functions (e.g., tooth extraction), high alcohol intake or the consumption of other drugs.
Participants visited the Genetic and Molecular Epidemiology Unit and the sensory research laboratory at Department of Preventive Medicine and Public Health at the University of Valencia, Valencia, on two-three separate sessions within a week. At the first session, participants completed a health and demographic questionnaire and their anthropometric parameters and blood pressure were measured as indicated. Participants also completed lifestyle questionnaires and the food preference questionnaires and were scheduled for a blood venepuncture in fasting conditions for biochemical analysis and DNA isolation. In addition, participants were scheduled for the taste perception tests under standardized conditions. Initially, the OBENUTIC study began in 2007 by only including the bitter taste perception tests but later, the project was completed by including the perception tests for the other tastes. In this study, we analysed 1020 participants (365 men and 655 women) for those who consecutively had the complete data available for the perception tests of bitter, sweet, sour, salty and umami tastes. Participants provided written informed consent and study protocol and procedures were approved according to the ethical standards of the Helsinki Declaration and by the Human Research Ethics Committee of the University of Valencia, Valencia.
Participants visited the Genetic and Molecular Epidemiology Unit and the sensory research laboratory at Department of Preventive Medicine and Public Health at the University of Valencia, Valencia, on two-three separate sessions within a week. At the first session, participants completed a health and demographic questionnaire and their anthropometric parameters and blood pressure were measured as indicated. Participants also completed lifestyle questionnaires and the food preference questionnaires and were scheduled for a blood venepuncture in fasting conditions for biochemical analysis and DNA isolation. In addition, participants were scheduled for the taste perception tests under standardized conditions. Initially, the OBENUTIC study began in 2007 by only including the bitter taste perception tests but later, the project was completed by including the perception tests for the other tastes. In this study, we analysed 1020 participants (365 men and 655 women) for those who consecutively had the complete data available for the perception tests of bitter, sweet, sour, salty and umami tastes. Participants provided written informed consent and study protocol and procedures were approved according to the ethical standards of the Helsinki Declaration and by the Human Research Ethics Committee of the University of Valencia, Valencia.
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BLOOD
Blood Pressure
Caucasoid Races
Communicable Diseases
Cushing's Disease
Diagnosis
Ethics Committees, Research
Gustatory Perception
Homo sapiens
Human Body
Infection
isolation
Malignant Neoplasms
Mental Disorders
Obesity
Pharmaceutical Preparations
Phlebotomy
Physical Examination
Primary Health Care
Sodium Chloride, Dietary
Taste
Thyroid Gland
Tooth Extraction
Woman
hPDLSCs were isolated from the periodontal tissue and hDPSCs from the dental pulp of noncarious third molars extracted for orthodontic purpose, as previously described [19 (link)]. Gingival tissues were collected during surgical gingival resection for the extraction of a supernumerary tooth or for orthodontic reasons. hGMSCs were detached after their spontaneous migration from tissue samples as reported by Soundara Rajan et al. [20 (link)]. All donors were in good general health and exempt from oral and systemic diseases. Cells were cultured using MSCGM-CD medium (mesenchymal stem cell growth medium chemically defined) (Lonza, Basel, Switzerland) and were maintained in an incubator at 37°C in a humidified atmosphere of 5% CO2 in air. Cells were subcultured until P2 and P15. All experiments were performed in triplicate. Cells derived from each donor have been used separately.
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Atmosphere
Cells
Culture Media
Dental Pulp
Donors
Gingiva
Mesenchymal Stem Cells
Operative Surgical Procedures
Periodontium
Third Molars
Tissue Donors
Tissues
Tooth Extraction
Most recents protocols related to «Tooth Extraction»
Protocol full text hidden due to copyright restrictions
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Adult
Ankle
Arthropathy
Blood Coagulation Disorders
Blood Transfusion
Central Nervous System
Coxa
Desmopressin
Epistaxis
Health Personnel
Hemarthrosis
Hematuria
Hemophilia A
Joints
Joints, Elbow
Knee
Muscle Tissue
Operative Surgical Procedures
Pain Measurement
Patients
Physical Examination
Shoulder
Therapy, Hormone Replacement
Tooth Extraction
Wounds
Wounds and Injuries
Children who attended the Child Integration Clinic, Dental Hospital of The Dentistry Faculty, Universitas Indonesia, from July-August 2014, for the removal of deciduous teeth to address dental health issues were eligible for this study. The inclusion criteria were: (1) the child and mother declared their willingness to participate in the study by signing a consent form explained to them previously; (2) the crown structure of the extracted tooth/teeth was still intact. Dental health personnel carried out the clinical assessment and tooth extraction following standard dental procedures.
Mothers were interviewed at the single visit when extraction was carried out to complete the overarching study questionnaire and the S-FFQ for themselves (retrospective recall for the period during pregnancy) and their children (over the period from weaning to one year old and current). Before completing the FFQ for foods consumed during pregnancy, the mothers were asked about their health during pregnancy, morning sickness and any food cravings. They were also asked to describe all foods they consumed on a daily (or frequent) basis, from breakfast to dinner. Portion size was estimated by the participants from the food photographs, and frequency of consumption was recorded. Daily Zn intake from the food source was calculated from these parameters and all intakes were summed to calculate total average daily Zn intake. Any information given by the participants was treated as confidential. They repeated the FFQ, but this time describing the food consumed by their child during infancy and again a FFQ for their child at their current age.
Mothers were interviewed at the single visit when extraction was carried out to complete the overarching study questionnaire and the S-FFQ for themselves (retrospective recall for the period during pregnancy) and their children (over the period from weaning to one year old and current). Before completing the FFQ for foods consumed during pregnancy, the mothers were asked about their health during pregnancy, morning sickness and any food cravings. They were also asked to describe all foods they consumed on a daily (or frequent) basis, from breakfast to dinner. Portion size was estimated by the participants from the food photographs, and frequency of consumption was recorded. Daily Zn intake from the food source was calculated from these parameters and all intakes were summed to calculate total average daily Zn intake. Any information given by the participants was treated as confidential. They repeated the FFQ, but this time describing the food consumed by their child during infancy and again a FFQ for their child at their current age.
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Child
Dental Care
Dental Health Services
Dental Staff
Eating
Faculty, Dental
Food
Health Personnel
Mental Recall
Morning Sickness
Mothers
Pregnancy
Tooth
Tooth Extraction
The sample size was calculated using a single population proportion formula by considering the following assumptions: Prevalence (P) = 12.5% (prevalence of milk teeth extraction in Axum),18 (link) confidence level (CL) = 95%, margin of error (d) = 5%, design effect = two and 10% non-response rate. Thus, the final calculated sample size was 370. Households having under-five children were taken from health extension workers’ registration books. The sampled households were proportionally allocated to each selected kebeles. A systematic sampling technique was used to select households from each kebele. The first household was selected using the lottery method among households.
Child
Health Personnel
Households
Milk, Cow's
Tooth Extraction
Data were collected using a pre-tested, semi-structured, and interviewer-administered questionnaire, which was adopted from the previous studies. The questionnaire was pre-tested on 5% of the sample size before the real data collection process at non-sampled kebeles, and modifications were made as needed. The questionnaire contains socio-demographic characteristics, history of primary tooth extraction among under-five children, reasons, level of awareness, and sources of information regarding milk tooth extraction. Data were collected through a face-to-face interview with five trained BSc holder nurses under the supervision of two MSc holder nurses. The training was given to data collectors on the objective, how to obtain consent, and keeping the confidentiality of the information. The completeness, accuracy, and consistency of the collected data were checked daily.
Awareness
Child
Face
Interviewers
Milk, Cow's
Nurses
Supervision
Tooth Extraction
Study participants were three patients (two female and one male patient; mean age, 51 years) with chief complaint of severe lower anterior teeth mobility and severe periodontal compromission hindering any periodontal or conservative treatment. As control case, a patient (#1) referred with chief complaint due to lower third molar pericoronitis and indication for surgical extraction was recruited.
The exclusion criteria for this study were antibiotic therapy administered up to 3 months before tooth extraction, systemic diseases, and pregnancy. Another exclusion criterium was evaluating that periodontal pockets could not reach the apical root segment. Moreover, inclusion criteria were teeth affected by EPL without clinically and radiographically identified caries lesions, cracks/fractures and/or restorations.
The patients involved in the research signed a formal written informed consent form.
EPL diagnosis was performed with periodontal probing that evaluate an average clinical attachment loss ≥5 mm on all root’s surfaces and radiographic analyses on periapical bidimensional radiographies using paralleling technique confirming bone loss extending to mid-third of root and beyond; moreover, periapical radiolucency was not observed. None of these teeth presented periodontal pockets reaching the apex. Teeth presented Grade 2 mobility with percussion and palpation sensitivity. In addition, thermal and electric pulp sensibility tests were performed returning non-responsivity and thus confirming pulpar necrosis. Thermal pulp test was performed with a #2 cotton pellet sprayed and fully saturated with 1,1,1,2-tetrafluoroethane and placed at the middle third of the buccal tooth’s surface of the clinical crown for at least 20 s. Cold pulp testing was selected as pulp sensibility test which is able to evaluate vital (specificity = 0.84) and non-vital (sensitivity = 0.87) teeth [10–12 (link)]. No other EPL signs/symptoms (sinus tract, spontaneous pain, periapical radiolucency, suppuration) were observed.
Moreover, on intraoral inspection using loupes for magnification 4.0× and radiographic evaluation, the teeth did not present clinically identified caries lesions, cracks, fractures nor previous conservative restorations. The final diagnosis for all teeth was of EPL without root damage of Grade 3, according to the classification from the American Academy of Periodontology criteria. The sampled teeth clinically appeared without defects, decay, or restorations and were affected by severe periodontitis (Stage IV) according to the classification of American Academy of Periodontology criteria [5 (link)]. Control sample consisted of an intact lower third molar without carious and periodontal pathologies, surgically extracted because affected by pericoronitis. All teeth affected by EPL were single-rooted (N = 5 lower incisors and N = 1 lower canine).
A total of 12 clinical samples of the study group were collected from periodontal (P) (n = 6) and endodontic (E) (n = 6) tissue samples of root canals from six intact teeth of three patients (P1 and E1 from patient #1, P2 to P5 and E2 to E5 from patient #2, and P6 and E6 from patient #3).
All teeth were single-rooted (lower incisors and lower canine).
The study was performed in agreement with the ethical guidelines of the Declaration of Helsinki laid down in the 1964 and its later amendments or comparable ethical standards. The Ethics Committee of Azienda Unità Sanitaria Locale of Bologna approved this study with authorization no. 844-2021-OSS-AUSLBO-21160-ID 3118-Parere CE-AVEC-ENDO-MICROBIOTA 09/2021.
The exclusion criteria for this study were antibiotic therapy administered up to 3 months before tooth extraction, systemic diseases, and pregnancy. Another exclusion criterium was evaluating that periodontal pockets could not reach the apical root segment. Moreover, inclusion criteria were teeth affected by EPL without clinically and radiographically identified caries lesions, cracks/fractures and/or restorations.
The patients involved in the research signed a formal written informed consent form.
EPL diagnosis was performed with periodontal probing that evaluate an average clinical attachment loss ≥5 mm on all root’s surfaces and radiographic analyses on periapical bidimensional radiographies using paralleling technique confirming bone loss extending to mid-third of root and beyond; moreover, periapical radiolucency was not observed. None of these teeth presented periodontal pockets reaching the apex. Teeth presented Grade 2 mobility with percussion and palpation sensitivity. In addition, thermal and electric pulp sensibility tests were performed returning non-responsivity and thus confirming pulpar necrosis. Thermal pulp test was performed with a #2 cotton pellet sprayed and fully saturated with 1,1,1,2-tetrafluoroethane and placed at the middle third of the buccal tooth’s surface of the clinical crown for at least 20 s. Cold pulp testing was selected as pulp sensibility test which is able to evaluate vital (specificity = 0.84) and non-vital (sensitivity = 0.87) teeth [10–12 (link)]. No other EPL signs/symptoms (sinus tract, spontaneous pain, periapical radiolucency, suppuration) were observed.
Moreover, on intraoral inspection using loupes for magnification 4.0× and radiographic evaluation, the teeth did not present clinically identified caries lesions, cracks, fractures nor previous conservative restorations. The final diagnosis for all teeth was of EPL without root damage of Grade 3, according to the classification from the American Academy of Periodontology criteria. The sampled teeth clinically appeared without defects, decay, or restorations and were affected by severe periodontitis (Stage IV) according to the classification of American Academy of Periodontology criteria [5 (link)]. Control sample consisted of an intact lower third molar without carious and periodontal pathologies, surgically extracted because affected by pericoronitis. All teeth affected by EPL were single-rooted (N = 5 lower incisors and N = 1 lower canine).
A total of 12 clinical samples of the study group were collected from periodontal (P) (n = 6) and endodontic (E) (n = 6) tissue samples of root canals from six intact teeth of three patients (P1 and E1 from patient #1, P2 to P5 and E2 to E5 from patient #2, and P6 and E6 from patient #3).
All teeth were single-rooted (lower incisors and lower canine).
The study was performed in agreement with the ethical guidelines of the Declaration of Helsinki laid down in the 1964 and its later amendments or comparable ethical standards. The Ethics Committee of Azienda Unità Sanitaria Locale of Bologna approved this study with authorization no. 844-2021-OSS-AUSLBO-21160-ID 3118-Parere CE-AVEC-ENDO-MICROBIOTA 09/2021.
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Antibiotics
Canis familiaris
Common Cold
Conservative Treatment
Dental Caries
Dental Pulp
Diagnosis
Electric Pulp Test
Endometriosis
Ethics Committees
Fracture, Bone
Gossypium
Hypersensitivity
Incisor
Males
Microbial Community
Necrosis
Operative Surgical Procedures
Osteopenia
Pain
Palpation
Patients
Percussion
Pericoronitis
Periodontal Pocket
Periodontitis
Periodontium
Pregnancy
Pulp Canals
Range of Motion, Articular
Signs and Symptoms
Sinuses, Nasal
Suppuration
Therapeutics
Thermal Pulp Test
Third Molars
Tissues
Tooth
Tooth Crowns
Tooth Extraction
Tooth Mobility
Woman
X-Rays, Diagnostic
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Amphotericin B is a broad-spectrum antifungal agent used in microbiology and cell culture applications. It is a polyene macrolide antibiotic that binds to ergosterol, a component of fungal cell membranes, leading to increased permeability and cell death.
More about "Tooth Extraction"
Tooth Extraction, also known as dental extraction or exodontia, is the surgical removal of a tooth from the dental alveolus (tooth socket).
This procedure may be performed for various reasons, including dental disease, crowding, or preparation for dental prostheses.
The process typically involves loosening the tooth from the surrounding bone and ligaments, and then gently removing it from the socket.
Effective tooth extraction protocols are crucial for ensuring the safety and success of the procedure.
PubCompare.ai, an AI-driven platform, can help researchers optimize their tooth extraction protocols by providing comparisons of the latest techniques and products from the literature, preprints, and patents.
This can help researchers identify the best methodologies to ensure reproducibility and accuracy in their research.
When performing tooth extraction, it is important to consider factors such as the type of tooth, the patient's overall health, and any underlying medical conditions.
Additionally, the use of various materials, such as FBS (Fetal Bovine Serum), Streptomycin, Penicillin, DMEM (Dulbecco's Modified Eagle Medium), Penicillin/Streptomycin, α-MEM (Alpha Minimum Essential Medium), and Collagenase type I, may be necessary for the successful extraction and subsequent treatment.
To ensure a smooth and efficient tooth extraction process, researchers may also utilize specialized tools, such as the Isomet, a precision cutting instrument used for sectioning teeth and bone.
Additionally, the use of Amphotericin B, an antifungal medication, may be necessary to prevent infections during the extraction and healing process.
By leveraging the insights and tools provided by PubCompare.ai, researchers can optimize their tooth extraction protocols, leading to improved outcomes and a better understanding of the latest advancements in this field of dentistry.
This procedure may be performed for various reasons, including dental disease, crowding, or preparation for dental prostheses.
The process typically involves loosening the tooth from the surrounding bone and ligaments, and then gently removing it from the socket.
Effective tooth extraction protocols are crucial for ensuring the safety and success of the procedure.
PubCompare.ai, an AI-driven platform, can help researchers optimize their tooth extraction protocols by providing comparisons of the latest techniques and products from the literature, preprints, and patents.
This can help researchers identify the best methodologies to ensure reproducibility and accuracy in their research.
When performing tooth extraction, it is important to consider factors such as the type of tooth, the patient's overall health, and any underlying medical conditions.
Additionally, the use of various materials, such as FBS (Fetal Bovine Serum), Streptomycin, Penicillin, DMEM (Dulbecco's Modified Eagle Medium), Penicillin/Streptomycin, α-MEM (Alpha Minimum Essential Medium), and Collagenase type I, may be necessary for the successful extraction and subsequent treatment.
To ensure a smooth and efficient tooth extraction process, researchers may also utilize specialized tools, such as the Isomet, a precision cutting instrument used for sectioning teeth and bone.
Additionally, the use of Amphotericin B, an antifungal medication, may be necessary to prevent infections during the extraction and healing process.
By leveraging the insights and tools provided by PubCompare.ai, researchers can optimize their tooth extraction protocols, leading to improved outcomes and a better understanding of the latest advancements in this field of dentistry.