Amber Molecular Dynamics
16 cited products
96 protocol citations
Amber Molecular Dynamics is a leading provider of cutting-edge software and tools for molecular simulation and computational chemistry research.
The company's flagship product, the Amber software suite, is widely used across diverse scientific fields, including drug discovery, materials science, and biophysics.
Amber's robust and versatile simulation capabilities empower researchers to explore the behavior and interactions of molecular systems at the atomic level, enabling groundbreaking advancements in areas such as protein structure prediction, ligand binding, and materials design.
The Amber suite encompasses a range of specialized modules, including the Amber molecular mechanics force field, the Amber simulation engine, and the AmberTools suite of analysis and visualization tools.
Amber's products are extensively cited in the scientific literature, showcasing their pivotal role in powering scientific discoveries and driving progress in various research domains.
Researchers can explore the latest applications of Amber's technologies and uncover insights into their impact through the PubCompare.ai platform, which provides comprehensive data on citation trends and research applications.
The company's flagship product, the Amber software suite, is widely used across diverse scientific fields, including drug discovery, materials science, and biophysics.
Amber's robust and versatile simulation capabilities empower researchers to explore the behavior and interactions of molecular systems at the atomic level, enabling groundbreaking advancements in areas such as protein structure prediction, ligand binding, and materials design.
The Amber suite encompasses a range of specialized modules, including the Amber molecular mechanics force field, the Amber simulation engine, and the AmberTools suite of analysis and visualization tools.
Amber's products are extensively cited in the scientific literature, showcasing their pivotal role in powering scientific discoveries and driving progress in various research domains.
Researchers can explore the latest applications of Amber's technologies and uncover insights into their impact through the PubCompare.ai platform, which provides comprehensive data on citation trends and research applications.
16 products from Amber Molecular Dynamics
Cpptraj is a command-line tool for analyzing and processing trajectory data from molecular dynamics simulations. It is designed to perform a wide range of analyses, including distance calculations, hydrogen bond analyses, and principal component analysis. Cpptraj is part of the AmberTools suite and is widely used in the field of computational chemistry and molecular biology.
AmberTools18 is a collection of programs, data files, and scripts that allows users to prepare, run, and analyze molecular dynamics simulations. It provides essential tools for molecular modeling and simulation, including functions for preparing input files, running simulations, and analyzing the results. AmberTools18 is designed to work seamlessly with the Amber molecular dynamics software suite, but can also be used independently.
AmberTools20 is a collection of programs, scripts, and data files that work together to assist in the setup, simulation, and analysis of molecular dynamics (MD) and related methods. It is designed to be used as a complement to the AMBER software suite, providing a set of tools for preparing input files, running simulations, and analyzing the results. The core function of AmberTools20 is to facilitate the execution of molecular dynamics simulations and analysis, without interpretation or extrapolation on its intended use.
CPPTRAJ module is a software tool used in molecular dynamics simulations. It provides a suite of commands for analyzing and processing trajectory data generated from molecular dynamics simulations. The core function of the CPPTRAJ module is to facilitate the analysis and visualization of the structural and dynamical properties of molecular systems during the course of a simulation.
Sourced in United States
TLEaP is a software package used for the preparation of molecular dynamics simulations. It provides a graphical user interface for the setup and manipulation of molecular systems, including the assignment of force field parameters and the generation of input files for common molecular dynamics simulation software.
MMPBSA.py is a computational tool used in molecular dynamics simulations to calculate the binding free energy between a ligand and a receptor. It employs the Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) method to estimate the free energy of binding. The tool provides a standardized workflow for performing these calculations, which can be useful for drug discovery and development processes.
The Antechamber module is a key component of the Amber Molecular Dynamics software suite. Its core function is to prepare small-molecule input files for use in molecular mechanics calculations and simulations. The module automatically assigns atom types, bond types, and partial charges to the input structures, ensuring compatibility with the Amber force field.
AmberTools17 is a collection of software tools for molecular mechanics and dynamics calculations. It provides a set of utilities for preparing, running, and analyzing molecular dynamics simulations. The core function of AmberTools17 is to facilitate the setup, execution, and analysis of molecular dynamics simulations.
ANTECHAMBER is a software suite that performs molecular mechanics calculations. It generates input files for a variety of molecular mechanics and quantum mechanics programs, and can also analyze and process the output of these programs.
The LEaP module is a core component of the Amber Molecular Dynamics software suite. It serves as a tool for preparing and managing input files for molecular simulations. The LEaP module allows users to build and modify molecular structures, assign force field parameters, and generate the necessary input files for subsequent analysis and simulation.
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