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Nuclear and cytoplasmic protein extraction kit

Manufactured by Keygen Biotech
Sourced in China

The Nuclear and Cytoplasmic Protein Extraction Kit is a laboratory tool designed to separate and extract nuclear and cytoplasmic proteins from cell samples. It provides a standardized method for the isolation and purification of these cellular fractions for downstream analysis.

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56 protocols using nuclear and cytoplasmic protein extraction kit

1

Optimized Synthesis and Characterization of LM9

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LM9 was synthesized with a purity over 97% in our laboratory. PA was solubilized in low-endotoxin bovine serum albumin (BSA) (5%) at a final concentration of 5 mM. PA and BSA were purchased from Sigma-Aldrich (St. Louis, MO, USA). The MTT assay kit and oil red O staining kit (for cultured cells) were acquired from Solarbio (Beijing, China). Antibodies were purchased from the following suppliers: anti-lamin B1 (ab133741), anti-IκB alpha (ab133462), anti-Ly6G (ab25377), anti-TNF-α (ab6671), anti-collagen I (ab6308), and anti-collagen IV (ab6586) were obtained from Abcam (Cambridge, MA, USA). Anti-TLR4 (sc-293072) and anti-TGF-β (sc-130348) were obtained from Santa Cruz (Dallas, TX, USA). Anti-FLAG (SAB4200071) and anti-HA (MFCD00803873) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-ICAM-1 (Cat# 60299-1-Ig) was obtained from Proteintech (Wuhan, China). Two plasmids encoding pCMV-HA-MyD88 and Flag-MyD88 were obtained from Sino Biological Inc. (Beijing, China).
ELISA kits for mouse TNF-α, IL-1β, and IL-6 were purchased from Invitrogen (Carlsbad, CA, USA). Nuclear and cytoplasmic protein extraction kits were from KeyGEN Biotech (Nanjing, China). PrimeScript™ RT reagent Kit with gDNA Eraser (Perfect Real Time) was purchased from Takara Bio (RR047A, Shiga, Japan).
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2

Protein Extraction and Quantification

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DOX was obtained from Selleck. DMF was purchased from Selleck, which was dissolved in 0.8% Carboxymethyl cellulose (CMC) for in vivo tests and 0.1% dimethylsulfoxide (DMSO) for in vitro experiments. The nuclear and cytoplasmic protein extraction kits were purchased from KEYGEN Biotech. Co., Ltd. (Nanjing, China). Bicinchoninic acid (BCA) protein assay kit and cell lysis buffer kit were obtained from Beyotime Institute of Biotechnology (Jiangsu, China).
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3

Western Blot Analysis of Protein Expression

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Nuclear and cytoplasmic proteins were extracted from HCT116 cells using nuclear and cytoplasmic protein extraction kits (KeyGen Biotech). Colorectal cancer tissues, subcutaneous tumor tissues and conditioned cells were lysed using RIPA buffer (Beyotime, Nantong, China) containing 1 mM PMSF (Beyotime). After determining protein concentration from a BCA standard curve by reading absorbance at 595 nm with a spectrophotometer, 30 μg total proteins were subjected to electrophoresis and separated on a 10% SDS-PAGE and then transferred to PVDF membranes. After blocking with 5% bovine serum albumin (BSA), antibodies against SGK1 (Abcam), P27 (Abcam, Cambridge, UK), Histone H3 (Cell Signaling Technology, West Grove, PA, USA) and GAPDH (Bioworld, Louis Park, MN, USA) were used as primary antibodies. Mouse or rabbit IgG antibodies coupled to horseradish peroxidase (HRP) were used as secondary antibodies. An enhanced electrochemiluminescence (ECL) system was used for protein band visualization.
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4

Comprehensive RNA Isolation and Analysis

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TRIzol reagent (Thermo Fisher Scientific), chloroform, isopropanol, and 75% ethanol were used to isolate total RNA from cell lines, and then A260/A280 values were measured to clarify the quality of the RNA. cDNA synthesis and quantitative PCR were performed as previously described.20 GAPDH or U6 was used as an internal reference gene, and the relative expression levels of the genes were calculated by the 2−△△ct method. All primer sequences were as follows (5′‐3′): GAPDH (ACAACTTTGGTATCGTGGAAGG, GCCATCACGCCACAGTTTC); DICER1‐AS1 (CATGTGTTGTGAGGGTTCTTCTG, TCCAGACCACACATCCATATTCC); MAPK1 (GCACCAACCATCGAGCAAAT, CTTGAGGTCACGGTGCAGAA). U6, hsa‐miR‐3612 and hsa‐miR‐650 primers were provided by RiboBio.
To isolate nuclear and cytoplasmic RNA, we first isolated total RNA with TRIzol reagent and then used nuclear and cytoplasmic protein extraction kits (KeyGEN BioTECH). DICER1‐AS1 expression was measured by RT–qPCR.
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5

Protein Extraction and Western Blot Analysis

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Total protein was extracted using the Lysis Buffer (Thermo Fisher Scientific). The nuclear and cytoplasmic fractions were isolated by the Nuclear and Cytoplasmic Protein Extraction Kit (KeyGEN, Nanjing, China) according to the manufacturer's instructions. The supernatant fraction was collected by centrifugation and the protein concentration was determined by Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific). Equal amounts of protein were separated by 10% SDS-PAGE (Epizyme, Shanghai, CHN) at 120 ​V for 80min, and then transferred electrophoretically to a nitrocellulose membrane at 100 ​V for 90min. The transferred membranes were blocked with 5% skim milk for 1 ​h and then incubated with primary antibody including β-catenin (1:2000; Cell Signaling Technology, USA), Lamin B1 (1:2000; Cell Signaling Technology, USA) and GAPDH (1:2000; Cell Signaling Technology, USA) at 4 ​°C for 12 ​h. The membrane was subsequently incubated with second antibody for 1 ​h, and exposed by the FluorChem R system (ProteinSimple, San Jose, CA, USA) for chemiluminescence. LaminB1 and GAPDH were used as the internal control of nucleic protein and total protein, respectively.
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6

Quantitative Western Blot Analysis

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Briefly, after washing twice with PBS, the cultured cells were collected and lysed in lysis buffer (100 mM Tris-HCl, pH 6.8, 4% (m/v) SDS, 20% (v/v) glycerol, 200 mM β-mercaptoethanol, 1 mM phenylmethylsulfonyl fluoride, and 1 g/mL aprotinin). Nuclear proteins were extracted using a nuclear and cytoplasmic protein extraction kit (KeyGen, Nanjing, China) according to the manufacturer’s instructions. The lysates were centrifuged at 13,000 × g for 15 min at 4 °C. The concentration of total proteins was measured using the BCA assay method with a Varioskan spectrofluorometer and spectrophotometer (Thermo, Waltham, MA) at 562 nm25 (link). The protein samples were separated on a 12% SDS-PAGE gel and electrophoretically transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore, Boston, MA). The immune complexes were formed after the incubation of the proteins with primary antibodies overnight at 4 °C. After incubation with the appropriate secondary antibodies, the blots were visualized using ECL plus western blotting detection reagents (Bio-Rad) and a ChemiDoc XRS Plus luminescent image analyzer (Bio-Rad, Hercules, CA, USA). The densitometric analysis of the band intensity was performed using Image lab software (Bio-Rad, Hercules, CA, USA).
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7

Western Blot Analysis of Cell Markers

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Equal amounts of protein were obtained from cell lysates, electrophoresed on SDS-polyacrylamide gel and transferred onto a nitrocellulose membrane (Pall) by electroblotting. Blots were incubated overnight with primary antibodies against CD31 (sc-376764, Santa Cruz, 1:1,000 dilution), FSP1 (ab-197896, Abcam, 1:1,000 dilution), CaSR (ab-19347, Abcam, 1:1,000 dilution), and GAPDH (ab-181602, Abcam, 1:1,000 dilution) followed by secondary antibodies (7074s, CST, 1:2,000 dilution or 7076s, CST, 1:2,000 dilution). In addition, the nuclear proteins were prepared by a nuclear and cytoplasmic protein extraction kit (KeyGen). Blots were incubated overnight with primary antibody against β-catenin (ab-32572, Abcam, 1:2,000 dilution). Lamin B served as the internal control for nuclear proteins.
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8

Protein Extraction and Western Blot Analysis

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Total protein was extracted from RAW264.7 cells using a Whole Cell Lysis assay (Nanjing KeyGen Biotech Co., Ltd.). Total nuclear and cytoplasmic proteins were extracted using the Nuclear and Cytoplasmic Protein Extraction kit (Nanjing KeyGen Biotech Co., Ltd.). Protein concentration was measured using a BCA protein assay kit (Nanjing KeyGen Biotech Co., Ltd.) and 20 µg protein/lane was separated via 10% SDS-PAGE. The separated proteins were subsequently transferred onto PVDF membranes and blocked with 5% BSA (Thermo Fisher Scientific, Inc.) at room temperature for 1 h. The membranes were then incubated overnight at 4°C with primary antibodies against NF-κB p65 (1:1,000), p-NF-κB p65 (1:1,000), Nrf2 (1:1,000), HO-1 (1:1,000), NQO1 (1:1,000), NLRC3 (1:1,000), TRAF6 (1:1,000), β-actin (1:2,000) or Histone H3 (1:2,000). Following the primary antibody incubation, the membranes were incubated with an HRP-conjugated anti-rabbit secondary antibody (Abcam; cat. no. ab6721; 1:5,000) at room temperature for 1 h. The membranes were washed multiple times with TBS-Tween-20 buffer and the protein bands were visualized using enhanced chemiluminescence reagent (cat. no. G2020; Wuhan Servicebio Technology Co., Ltd.) and a chemiluminescence imaging system (Bio-Rad Laboratories, Inc.). Densiometric analysis was performed using Image Lab software (version 6.0; Bio-Rad Laboratories, Inc.).
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9

Western Blot Analysis of NF-κB Signaling

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Proteins were extracted from IPEC-J2 cells using RIPA lysis buffer (P0013B, Beyotime, China) and a Nuclear and Cytoplasmic Protein Extraction Kit (KGP1000, KeyGEN, China). Proteins were quantified using a BCA protein assay kit (KGP1100, KeyGEN). Proteins (20 μg/sample) were separated by SDS-PAGE (Tricine-SDS-PAGE Gel Kit, CW2384S, Cwbio, China), transferred to nitrocellulose membranes (88585, Pierce, Rockford, USA), and then hybridized with specific antibodies. The following antibodies were used: NF-κB p65 (#8242, Cell Signaling Technology, Danvers, MA, USA), phospho–NF-κB p65 (#3033, Cell Signaling Technology), IκBα (#4814, Cell Signaling Technology), phospho-IκBα (#2859, Cell Signaling Technology), Nrf2 (#12721, Cell Signaling Technology), anti–HO-1 (EP1391Y, Abcam, UK), lamin B1 (ab16048, Abcam, UK), and β-actin (CW0096, Cwbio). Total protein and cytoplasmic protein levels were normalized using β-actin expression to correct for differences in protein loading. Nuclear protein blots were normalized using lamin A/C to correct for differences in protein loading. Blots were visualized using an ECL detection system, and proteins were quantified using a ChemiDoc XRS+ image analyzer (Bio-Rad, Hercules, CA, USA).
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10

Cellular Compartment Protein Extraction

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The nuclear and cytoplasmic compartment proteins of cells were isolated using a Nuclear and Cytoplasmic Protein Extraction Kit (KeyGEN Biotech, Jiangsu, China) according to the manufacturer’s instruction.
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