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Strataprep plasmid miniprep kit

Manufactured by Agilent Technologies
Sourced in United States

The StrataPrep Plasmid Miniprep Kit is a laboratory equipment product designed for the rapid and efficient purification of plasmid DNA from bacterial cultures. It is a tool used in various molecular biology applications.

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2 protocols using strataprep plasmid miniprep kit

1

Cloning and Sequencing of SmMKS2 cDNA

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The total RNA was isolated from the collected tissues and converted to cDNA using ProtoScript®II First Strand cDNA Synthesis kit (New England Biolabs, Massachusetts, USA) and oligo (dT)18 primer. Full-length cDNA sequences for SmMKS2s were obtained by polymerase chain reaction (PCR) using 1 μL of the resulting cDNA and gene-specific primers (Supplementary File 8). The PCR products were purified using Expin™ Gel SV (GeneAll Biotechnology Co., Ltd., Seoul, Korea) and cloned into pGEM-T Easy cloning vector (Promega, Wisconsin, USA). The recombinant plasmids were transformed into E. coli TOP10 competent cells. Positive clones were selected by blue/white colony screening and PCR colony. Recombinant plasmids were extracted using StrataPrep Plasmid Miniprep Kit (Agilent Technologies, California, USA) and their inserts were sequenced. Three SmMKS2 sequences have been deposited in GenBank with accession number MK990608, MK990609, and MK990610, respectively. Phylogenetic and molecular evolutionary analyses were conducted using MEGA X [22 (link)].
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2

Rapid nanopore sequencing of plasmids

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Plasmid DNA was isolated from overnight cultures using the StrataPrep Plasmid Miniprep Kit (Agilent), per the manufacturer's instructions. These were then prepared for Oxford Nanopore sequencing using the Oxford Nanopore rapid barcoding library prep, per the manufacturer's instructions, with a separate barcode used for each plasmid. These were run on a single MinION flowcell for 1 h and 50 min. The reads were base‐called using the guppy_basecaller v5.0.7 high accuracy model and demultiplexed using guppy_barcoder, resulting in between 28.8 Mbp and 35.1 Mbp for each plasmid. These reads were used as input for medaka, using medaka_consensus to correct the original plasmid sequence.
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