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103 protocols using ciras 3

1

Photosynthetic Characteristics Measurement

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The net photosynthesis rate (Pn), intercellular CO2 concentration (Ci), stomatal conductance (Gs), and transpiration rate (Tr) were recorded from 9:00 to 11:00 a.m. with a CIRAS-3 portable photosynthesis system (CIRAS-3, PP Systems, Amesbury, United States). All photosynthetic characteristics were measured at 1,000 μmol photons m–2 s–1 and a constant 500 μmol s–1 airflow rate. The CO2 concentration was 400 μmol CO2 mol–1 air. For each treatment, photosynthetic parameters were measured from 10 fully exposed and mature leaves at the same position.
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2

Photosynthetic Response to Salt Treatment

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During the whole process of salt treatment, every three days we measured Pn, Ci, gs, and Tr using a CIRAS-3 portable photosynthesis system (CIRAS-3, PP Systems, Amesbury, MA, USA) between 9:00 and 11:00. The instrument parameter setting referred to the description of Liu et al. [55 (link)]. For each treatment, 5–8 functional leaves at the same position are selected for the measurement of photosynthetic parameters. Five analytical replicates were selected from the measurement results for analysis.
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3

Physiological and Biochemical Responses Assay

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Electrolyte leakage (EL) was measured according to Sun et al. (2018 (link)). The total chlorophyll was extracted with 80% acetone, and a UV‐2250 spectrophotometer (Shimadzu, Kyoto, Japan) was used to measure the chlorophyll content according to Liu et al. (2021 (link)). RWC was calculated following the method of Jia et al. (2021b (link)). The leaf angle was the angle between the straight part of the leaf and the stem. A CIRAS‐3 portable photosynthesis system (CIRAS‐3; PP Systems, Amesbury, MA) was used to measure photosynthetic parameters. The chlorophyll fluorescence was detected using a chlorophyll fluorescence imaging system (IMAGING‐PAM, WALZ, Bavaria, Germany).
NBT and DAB were used to detect the accumulation of superoxide radical (O2) and hydrogen peroxide (H2O2), respectively (Fryer et al., 2002 (link)). Free proline content, as well as MDA, H2O2, O2 and P5CS activity were detected using their corresponding detection kits (Suzhou Comin Biotechnology Co., Ltd., Suzhou, China).
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4

Chlorophyll and Gas Exchange Measurements

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The chlorophyll content was determined 24 h before plant harvesting by means of a leaf-clip sensor (Dualex Force, Orsay, France). In each plant, three leaves of the third branch from the top were selected, and the average chlorophyll content was obtained from three measurements taken at the central position of each leaf.
The gas exchange measurements at 400 ppm CO2, including stomatal conductance, CO2 assimilation rate, and water use efficiency (WUE) were obtained from leaves of the third branch from the top of four randomly replicate plants per treatment, making use of a CIRAS-3 portable gas exchange system (PP-Systems, Amesbury, MA, USA) 24 h before plant harvesting. The leaves were pressed between the upper and lower gaskets of the leaf cuvette head of CIRAS-3 and pre-acclimated for 15−20 min.
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5

Measuring Net Photosynthesis in Seedlings

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The net photosynthesis rates of cotyledons of (4 DAG) seedlings were measured with CIRAS-3 (PP Systems, Amesbury, MA, United States). The analyzers act as absorption meters to measure infrared absorption. The optical bench is temperature-controlled and pressure-compensated to provide accurate CO2 and H2O measurement. Net photosynthesis (A) was determined from the difference between the CO2 concentration entering (Cin) and exiting (Cout) the cuvette. IRGA CO2 reading was corrected for water vapor, temperature, and atmospheric pressure. Since humidity dilutes the air leaving the cuvette (Cout), it was compensated using the following equation: net photosynthesis (A) = (Cin × W) – [Cout × (W+E)], where (A) is net photosynthesis, (W) is mass flow of air per unit leaf area into the cuvette, and (E) is transpiration rate.
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6

Leaf Gas Exchange Analysis

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The gas exchange analysis was performed on intact attached leaves of 21-day old plants using a Ciras 3 portable photosynthesis instrument equipped with a narrow (1.7 cm2) leaf cuvette (PP systems, Haverhill MA, United States). For ACCx3 pretreated plants treatments were done on days 18, 19, 20. The net assimilation rate (Pn), stomatal conductance (gs), and transpiration rate (E) were determined under two temperature conditions (22 and 37°C) and at steady state of photosynthesis using a CO2 level of 400 µl l−1 and light intensity of 700 µmol m−2 s−1.
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7

Leaf Gas Exchange Characteristics

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The leaf gas exchange characteristics viz. photosynthetic rate (A), stomatal conductance (gs), sub-stomatal conductance (Ci), and transpiration rate (E) were recorded from the second fully expanded young mature leaf from the top using portable photosynthesis system CIRAS-3 (PP Systems, Amesbury, U.S.A.). These observations were made in the morning between 8:00 and 10:00 with the adjustments as reported in Shehzad et al. (2020 ).
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8

Photosynthesis Measurement in Seedlings

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Six seedling leaves from three trays were measured for the photosynthetic parameters by using a narrow leaf chamber connected to a CIRAS-3 (PP Systems, Amesbury, MA, US) [26 (link)]. In this study, 400 µmol mol−1 of carbon dioxide was constantly retained, and 800 µmol m−2s−1 of light intensity was maintained with the light-emitting diode light sources placed in the leaf chamber.
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9

Photosynthetic Parameters of Nanoparticle Exposure

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Photosynthetic parameters, such as: leaf net photosynthesis (A), sub-stomatal CO2 concentration (Ci), transpiration (E), stomatal conductance (gs), photosynthetic water use efficiency (WUE), and photosynthetic CO2 response curve (A/Ci) were determined with a portable gas exchange analyzer (CIRAS-3; PP Systems, Amesbury, MA, USA). Measurements were performed 12 days after the administration of nanoparticles on fully expanded leaves at the fourth node. PARi levels at 1000 µmol/m2s were obtained from an LED Light Unit (RGBW) connected to the gas analyzer. The temperature within the chamber was kept at 25 °C, relative humidity at 80%, and reference CO2 concentration at 390 µmol/mol. Photosynthetic CO2 response curves were collected at a CO2 concentration gradient ranging from 0 to 1500 µmol/mol. All measurements were performed on fully expanded leaves at the fourth node. The acclimatization time between measurements was 120 s. The results from each CO2 level were recorded three times. Two biochemical parameters: maximum carboxylation rate (Vcmax) and maximum electron transport rate (Jmax) were calculated in Rstudio (v.3.4.2; R Foundation for Statistical Computing, Vienna, Austria) [66 ] using the “plantecophys” package developed by Duursma [67 (link)].
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10

Evaluating Photosynthetic Adaptations

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Assimilation of CO2, transpiration and stomatal conductance were measured using an infrared gas analyzer (Ciras-3, PP Systems, Hitchin, UK), with a Parkinson leaf chamber (PLC6) automatically controlling the measurement conditions (irradiance = 500 μmol (quanta) m−2 s−1, halogen lamps, RH = 30%, CO2 concentration (400 μmol (CO2) mol−1 (air)). The airflow rate through the assimilation chamber was 350–400 cm3 min−1. The measurements were made in the middle part of leaves and were performed for four replicates of each introgression form on one day before cold acclimation initiation and on the 7th, 14th, and 21st day of CA, in the temperature designed for these time-points according to Augustyniak et al. (2018) [38 (link)]. Based on the measured gas exchange parameters, water use efficiency was calculated as the ratio of the rate of CO2 assimilation to the rate of transpiration.
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