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16 protocols using bovine serum albumin (bsa)

1

Epitope Immunoreactivity Screening by ELISA

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Immunoreactivity of pin-bound synthesized epitopes was tested at RT by ELISA [51 (link),53 (link)] against three groups of pooled sera: initial CDI episode, umbilical cord blood, or healthy volunteers. The assay consisted of four main steps: pins incubation with: (1) blocking solution containing 1% BSA (SeraCare, Milford, MA, USA) in TBS-T; (2) primary antibodies in a 1:1000 dilution in TBS-T with 0.1% BSA in TBS-T; (3) secondary antibodies – anti-human IgG conjugated with AP (cat. A1543-1ml, Sigma-Aldrich) in a 1:10000 dilution in TBS-T; and (4) Alkaline Phosphatase Yellow Liquid Substrate System for ELISA (AP Yellow, Sigma-Aldrich). Plates were read at 405 nm (PowerWave HT, BioTek Instruments, Winooski, VT, USA). After assay, bound antibodies were stripped off by sonication in disruption buffer (1% sodium dodecyl sulfate, 0.1% 2-mercaptoethanol and 0.1 M Na3PO4) preheated to 60 °C, washed in water and methanol, and left to dry.
Based on the results obtained in ELISA assays, the baseline was calculated, and peptides were selected for further analysis. In his work, Carter suggested that the background should be calculated as the mean of the 10–25% of the lowest results [51 (link)]. We, however, considered the baseline as a mean of the results obtained for all peptides, which is a more restrictive approach.
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2

Synthesis of PGG-loaded Albumin Nanoparticles

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PGG-loaded nanoparticles were obtained by dissolving 250 mg of bovine serum albumin, BSA (Seracare, MA) in 4 mL of deionized (DI) water as stated previously. PGG (125 mg) was dissolved in 400 μl of dimethyl sulfoxide (DMSO) then the solution was added to BSA solution. Glutaraldehyde solution at a concentration of 12μg/mg of protein (BSA) was added while stirring. After an hour of continuous stirring, the mixture was added dropwise to 24 mL of ethanol under continuous probe sonication. The sonication was continued for an additional 30 mins. The nanoparticles were separated by centrifugation and washed.
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3

NRGN Protein Quantification by ELISA

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A human NRGN ELISA that our group developed was used as previously described [24 (link)], an electro-chemiluminescent sandwich immunoassay for NRGN based on the MesoScale Discovery platform (MesoScale Discovery, Gaithersburg, MD). A purified, mouse monoclonal anti-NRGN was used as the capture antibody, and an unlabeled polyclonal rabbit anti-NRGN was used for detection, and identified by a MesoScale Discovery Sulfo-TAG-labelled goat anti-rabbit antibody (R32AB). The standard curve (from 40–0.055 ng/mL) was constructed by serial dilutions of purified recombinant hNRGN in 1 X PBS containing 1% bovine serum albumin (SeraCare Life Sciences, Milford, MA).
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4

NRGN Protein Quantification by ELISA

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A human NRGN ELISA that our group developed was used as previously described [24 (link)], an electro-chemiluminescent sandwich immunoassay for NRGN based on the MesoScale Discovery platform (MesoScale Discovery, Gaithersburg, MD). A purified, mouse monoclonal anti-NRGN was used as the capture antibody, and an unlabeled polyclonal rabbit anti-NRGN was used for detection, and identified by a MesoScale Discovery Sulfo-TAG-labelled goat anti-rabbit antibody (R32AB). The standard curve (from 40–0.055 ng/mL) was constructed by serial dilutions of purified recombinant hNRGN in 1 X PBS containing 1% bovine serum albumin (SeraCare Life Sciences, Milford, MA).
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5

EDTA-Loaded BSA Nanoparticle Synthesis

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EDTA-loaded NPs were obtained by dissolving 200 mg of BSA (Seracare, MA) and 100 mg of EDTA (Fisher Scientific, NJ) in 4 mL of deionized water and pH was adjusted to 8.5 with 6 N NaOH. The aqueous solution was added drop-wise to 16 mL of ethanol under probe sonication for 1 hour. For crosslinking, glutaraldehyde at ten µg per mg of BSA was added during sonication. The elastin antibody was conjugated in a method similar to the DiR NPs23 (link).
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6

Preparation of DiR-Loaded BSA Nanoparticles

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DiR (1, 1-dioctadecyl-3, 3, 3, 3-tetramethylindotricarbocyanine iodide) (PromoCell GmbH, Heidelberg, Germany) loaded BSA (Seracare, Milford, MA) nanoparticles were prepared by a similar method as described previously [3 (link),6 (link)]. Briefly, bovine serum albumin, BSA (250 mg) was dissolved in DI water (4 mL) and then DiR dye (25 mg suspended in acetone) was added to BSA solution and stirred for one hour following the addition of glutaraldehyde (EM grade 70%, EMS, PA, USA) at a concentration of 42 μg/mg BSA. The mixture was added dropwise to 24 mL of ethanol under sonication (Omni Ruptor 400 Ultrasonic Homogenizer, Omni International Inc, Kennesaw, GA) on ice for 30 minutes.
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7

Elastin-Targeted DiR-Loaded Nanoparticles

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DiR (1, 1-dioctadecyl-3, 3, 3, 3-tetramethylindotricarbocyanine iodide) (PromoCell GmbH, Heidelberg, Germany) loaded bovine serum albumin (BSA) (Seracare, Milford, MA) nanoparticles were prepared as described previously [28 (link)]. These particles were PEGylated (Maleimide-PEG NHS ester) (Avanti Polar Lipids, Inc., Alabaster, AL) and conjugated to anti-elastin antibody as described previously [29 (link)]. DiR dye was loaded to track the particles.
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8

Elastin-Targeted Nanoparticle Preparation

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DiR dye (PromoCell GmbH, Heidelberg, Germany) loaded bovine serum albumin (BSA, Seracare, Milford, MA) nanoparticles (DiR NPs) and PGG loaded BSA nanoparticles were prepared using desolvation method and conjugated to anti-elastin antibody (US Biological, MA, USA) for targeting purposes as described previously [13 (link), 17 (link)–20 (link)] to obtain ELN-DiR NPs and ELN-PGG-NPs. Detailed methods are provided in the Additional file 1: Appendix.
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9

Immunoassay Reagents and Protocols

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Nunc MaxiSorp flat-bottom 96-well plates (F96) and non-binding U-bottom 96-well plates (U96), 1 × phosphate buffered saline (PBS) buffer pH 7.4 and blocking buffers SuperBlock and Blocker Casein were purchased from Thermofisher Scientific, Waltham, Massachusetts, USA. Individual and pooled normal human sera were obtained from ZenBio, Durham, North Carolina, USA. The recombinant proteins FGL1 and LAG3 were supplied by Sino Biological, Beijing, China. Streptavidin (SA)-labeled magnetic beads were purchased from Laizee, Shanghai, China. SA-labeled Horseradish Peroxidase (SA-HRP) was obtained from Abcam, Cambridge, UK. HLX26 and biotin-labeled HLX26 (HLX26-biotin) were prepared by Henlius, Shanghai, China. The TMB was purchased from Surmodics, Eden Prairie, Minnesota, USA. The 1% bovine serum albumin (BSA) and 2% BSA were prepared with 10% BSA (SeraCare, Milford, Massachusetts, USA). The 1 M Tris-HCl buffer pH 9.5 was purchased from Sangon, Shanghai, China, and the 0.3 M glycine solution (pH 2.0) and 2 M H2SO4 were prepared in our lab.
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10

STING Activation and Biotin Tagging

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293T cells were transduced with pTRIP-hPGK-Blast-2A-STING-TurboID and selected with 15 µg/ml Blasticidin (Invivogen) for one week. To test the construct via pull-down, 0.8 million cells were seeded in a six-well plate. The following day, cells were permeabilized with 300 µl/well of cGAMP permeabilization buffer [50 mM HEPES (Corning), 100 mM KCl (Thermo Fisher), 3 mM MgCl2 (Thermo Fisher), 0.1 mM DTT (Thermo fisher), 85 mM Sucrose (Thermo Fisher), 0.5 mM ATP (Cayman chemicals), 0.1 mM GTP (Cayman Chemicals), 0.2% BSA (Seracare), 0.001% Digitonin (Promega)] containing 1 µg/ml 2′3′-cGAMP (Invivogen) or water for 10 min at 37 °C, washed with 3 ml of warm medium and then medium was replaced. For mass-spec, 6 million cells were seeded in a 10 cm dish for each condition. Cells were stimulated with 2.8 ml of cGAMP permeabilization buffer containing 6 µg total of cGAMP per dish. Cells were left stimulating for the desired times and 500 µM biotin (Cayman chemicals) was added in each well 30 min prior to harvest. Cells were harvested by trypsinization, washed three times in cold PBS and pellets were frozen until processing. For experiments in six-well plates, 3 wells per condition were harvested. For experiments in 10 cm dishes, one dish per condition was harvested.
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