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9 protocols using hematoxylin

1

Histopathological Analysis of Tumor Samples

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In brief, the tumor tissues were fixed in 4% paraformaldehyde at 4 °C for 72 h. Then, the selected samples were embedded in paraffin, sectioned and stained with hematoxylin (Sinopharm Chemical Reagent Co., Ltd., Beijing, China) and with antibody for cleaved caspase-3, LC3B, p62, cathepsin B or cathepsin D. The primary antibodies were used at the following dilutions: 1:200 for cleaved caspase-3, 1:400 for LC3B, 1:100 for p62, 1:100 for cathepsin B and 1:200 for cathepsin D. Finally, the sections were mounted with DPX mountant (Sigma, St. Louis, MO, USA), and the images were captured using microscopy (Leica, Wetzlar, Germany).
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2

Histological Processing of Tumor Tissues

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The tumor tissues were fixed with 4% paraformaldehyde overnight and washed with flowing water for 4 h. Then, dehydration with grading concentrations of ethanol (70% for 2 h, 80% overnight, 90% for 2 h, 100% for 1 h twice), and hyalinization of xylene (for 30 min) were performed. Subsequently, the tissues were embedded into paraffin, and cut into 5-μm sections, which were deparaffinized with xylene and ethanol. The nuclei were stained with hematoxylin (Sinopharm, Shanghai, China), and cytoplasm was stained with eosin (Sangon Biotech (Shanghai) Co., Ltd., Shanghai, China). Finally, the sections were dehydrated again, mounted with gum, and photographed with a microscope (Olympus, Tokyo, Japan) at 200× magnification.
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3

Preparation and Characterization of Plant Soot

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Plant soot (Lot#2-9243-2-01-11; purity 95%) was provided by China National Center for Veterinary Drug Safety Assessment (Beijing, China). 2,4,6-Trinitrobenzene (≥99% pure, CAS: 88-89-1) was obtained from Beijing Giant-Carrier Co., Ltd. (Beijing, China); 37–40% formalin and carboxyl methyl cellulose sodium (CMC-Na) were purchased from Tianjin Damao Chemical Reagent Factory Co., Ltd. (Tianjin, China). Potassium hydroxide was purchased from Shantou Xilong Chemical Plant Co., Ltd. (Shantou, China). Ethyl alcohol, xylene, paraffin, neutral gum, transparent agent, hematoxylin, eosin, chloral hydrate, citric acid, chromium potassium sulfate, glacial acetic acid, glycerin, and chloral hydrate were obtained from Sinopharm Chemical Reagent Co., Ltd. (Beijing, China). Alizarin red and sodium hydrochloride were purchased from Beijing Chemical Reagent Co., Ltd. (Beijing, China). Serum albumin (Alb), alanine aminotransferase (ALT), aspartate aminotransferase (AST), urea nitrogen (BUN), total cholesterol (TCH), creatinine (Cr), glucose (Glu), total protein (TP), and triglyceride (TG) detection kits were all obtained from Shanghai Kehua Bio-Engineering Co., Ltd. (Shanghai, China).
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4

Histological Examination of Testis

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A 10% neutral buffered formalin solution was used to fix the testis for at least one week prior to HE staining. Approximately 3 mm thick testicular tissues were dehydrated, rendered transparent, and boiled in wax before being embedded in paraffin. The sections (3 μm) were dried for 48 h at 60 ° C and dewaxed in water before being dipped in hematoxylin (Sinopharm Chemical Reagent Beijing Co., Ltd., Beijing, China) for 15 min and washed in tap water for 5 min. Subsequently, the sections were dipped in eosin (Sinopharm Chemical Reagent Beijing Co., Ltd.) for 15 s, then washed again for 5 min. After dehydration of the alcohol gradient, the clearance with xylene and placement of a cover slip were performed. Observations were conducted using the LEICA DM6000 light microscope (Leica, Wetzlar, Germany).
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5

Regulation of Immune Response by IRBP Peptide

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Interphotoreceptor retinoid-binding protein (IRBP) peptide (amino acids 1177–1191; sequence, ADG SSW EGV GVV PDV) and primers were synthesized by Shanghai Sangon Biological Engineering Technology & Services Co., Ltd. (Shanghai, China). Complete Freund's Adjuvant (CFA) and 2-mercaptoethanol were purchased from Sigma-Aldrich (St. Louis, MO, USA). Mycobacterium tuberculosis (TB, strain H37RA) was purchased from Difco (Difco Laboratories, Detroit, MI, USA). Recombinant rat IL-2, fluorescein isothiocyanate- (FITC-) conjugated TLR4 antibody, and phycoerythrin- (PE-) conjugated IL-10 antibody were purchased from Peprotech (Rocky Hill, NJ, USA), Thermo Fisher Scientific (Waltham, MA, USA), and BD Pharmingen (Mountain View, CA, USA), respectively. Phosphate buffer saline (PBS, pH 7.4, 20 mmol/L), formaldehyde, paraffin, hematoxylin, and eosin (HE) were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China). RPMI 1640 medium was purchased from Gibco; Thermo Fisher Scientific, Ltd. (Waltham, MA, USA). IL-10 (JYM0651Ra) ELISA kit was purchased from Dakewe Biotech Co., Ltd. (Beijing, China). Toll-like receptor 4 (JYM0085Ra) ELISA kit was purchased from Wuhan ColorfulGene biological technology Co., Ltd. (Wuhan, China).
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6

Immunohistochemical Analysis of Tumor Samples

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Briefly, tumor tissues embedded in paraffin were obtained from our previous experiments [26 (link)]. Samples were sectioned, stained with hematoxylin (Sinopharm Chemical Reagent Co., Ltd., Beijing, China) and antibodies against PCNA, p21, MMP-2, MMP-9, NFκB p65, CHOP, LC3B, vimentin, Snail or Slug. The primary antibodies were applied at 1:200 for PCNA, 1:200 for p21, 1:400 for MMP-2, 1:400 for MMP-9, 1:1000 for NFκB p65, 1:200 for CHOP, 1:400 for LC3B, 1:200 for vimentin, 1:200 for Snail and 1:200 for Slug. Finally, sections were mounted with DPX mounting media (Sigma-Aldrich), and images were obtained using a microscope (Leica, Wetzlar, Germany).
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7

MT Effects on Gonadal Sex Differentiation in S. schlegelii

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In order to evaluate the influence of MT exposure during the gonadal differentiation of S. schlegelii, first, the sex of each individual was determined through PCR. And, histological analysis was performed on S. schlegelii gonads at 140 dpb (n = 10–15/per group) for both the control group (XX and XY) and those subjected to MT treatments (XX) (20 ppm, 40 ppm, and 60 ppm). Briefly, the gonads were first collected and fixed overnight in 4% paraformaldehyde (Solarbio, Beijing, China). Posteriorly, the samples were dehydrated in alcohol (Sinopharm, Beijing, China) and xylene (BaSO) and embedded in paraffin wax (Leica, Wetzlar, LLH, Germany). Then, histological sections of 3 μm thickness were obtained and stained with hematoxylin (BaSO) and eosin (Sinopharm) for observation of general cellular structures under a microscope.
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8

Histological Brain Tissue Processing

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Tissue samples were fixed in 4% formaldehyde solution (pH 7.0; Sinopharm Chemical Reagent Co., Ltd.) for two days, and then processed for paraffin sectioning using a paraffin slicer (RM2235, Leica Microsystems, Inc., Buffalo Grove, IL, USA). The sections (5 µm) were stained with hematoxylin (Sinopharm Chemical Reagent Co. Ltd.) for 3 min, washed in tap water for 30 min, and de-stained in warm water for 10 sec. The sections were then washed again in running water for 15 min, and stained with eosin (Sinopharm Chemical Reagent Co., Ltd.) for 15 sec prior to washing for 20 min. The brain tissue sections were finally dehydrated using alcohol gradients, prior to xylene (Sinopharm Chemical Reagent Co. Ltd.) clearance and cover slipping. The stained sections were observed under a light microscope (DM2500, Leica Microsystems, Inc.).
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9

Collagen II Immunofluorescence and Toluidine Blue Staining

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Collagen II immunofluorescence staining was performed as follows: the monolayer cells were dripped on the cover glass, fixed with 4% paraformaldehyde for 20 min and incubated with 3% H2O2 (Sinopharm, Beijing, China) at room temperature for 10 min. After that, the cells were rinsed with phosphate buffer saline (PBS) (Hyclone, Logan, UT, USA) for 5 min 3 times and incubated with 5% bovine serum albumin (BSA) (Sigma-Aldrich) for 10 min, and the serum was removed. The cells were added with rabbit Collagen II antibody (ab34712, 1:200, Abcam, Cambridge, MA, USA) at 4 °C overnight. Subsequently, the cells were rinsed thrice with PBS, incubated with biotin-labeled goat anti-rabbit IgG secondary antibody (1:100, A0277, Beyotime, Shanghai, China) for 10 min and rinsed with PBS 3 times. Finally, the cells were cultured with 2,4-diaminobutyric acid, re-stained with hematoxylin (Sinopharm), dehydrated with absolute ethanol and observed under an optical microscope.
Toluidine blue staining was performed as follows: the chondrocytes were seeded in 6-well plates with pre-fixed sterile cover glass. After adhesion, the cells were collected and fixed with 40 g/L polytoluene for 20 min and 75% ethanol for 15 min, and stained with 1% toluidine blue for 2–3 h. Then, the cells were rapidly rinsed with absolute ethanol, cleared with xylene (Sinopharm) and observed under an optical microscope.
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