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4 protocols using anti cip1 waf1

1

Western Blotting for Protein Analysis

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Our Western blotting procedure was described in detail earlier [16 (link),17 (link),43 (link)]. Total protein concentrations were determined with the DC Protein Assay (BioRad). Proteins were fractionated by PAGE on mini-PROTEAN TGX any-kD precast gels and blotted onto PVDF membranes. The primary antibodies included anti-HSP90 (Santa Cruz Biotechnology, Heidelberg, Germany, #sc-13119), anti-Rac1b (Merck Millipore, Darmstadt, Germany, #09-271), anti-E-cadherin and anti-Cip1/WAF1 (BD Transduction Laboratories, Heidelberg, Germany, #610181 and #610233, respectively), anti-Snail and anti-phospho-ERK1/2 (Cell Signaling Technology, Frankfurt/Main, Germany, #4719 and #4370, respectively), anti-ERK1/2 (R&D Systems, Wiesbaden, Germany, #AF1576), anti-GAPDH (14C10, Cell Signaling Technology, #2118), and anti-β-actin (Sigma). Incubation with HRP-linked secondary antibodies (Cell Signaling Technology, anti-rabbit, #7074, and anti-mouse, #7076) was followed by chemoluminescent detection of proteins on a ChemiDoc XRS+ System with Image Lab Software (BioRad) using Amersham ECL Prime Detection Reagent (GE Healthcare, Munich, Germany). The signals for the proteins of interest were normalized to bands for the housekeeping genes GAPDH or HSP90.
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2

Immunoblotting and Immunofluorescence Assays

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HT-29 and LoVo cells were cultured as described above and immunoblotting was performed as described previously [24 (link)]. The following antibodies were used: E2F1 (Cat No. SC251, Santa Cruz Biotechnology, Santa Cruz, CA), antiphospho-histone H2AX (Cat No. 05-636), p53 (Cat No. OP43) and p73 (Cat No. PC385) (EMD Millipore, Billerica, MA), Nbs1 (Cat No. 3002) and phospho-Nbs1 (Cat No. 3001) (Cell Signaling Technology, Beverly, MA), anti-Cip1/WAF1 (Cat No. 610233) and anti-p27Kip1 (Cat No. 610241) (BD Transduction Laboratories, San Diego CA), TRF2 (Cat No. NB110-57130) and POT1 (Cat No. NB500-176) (Novus Biologicals, Littleton, CO), beta-actin (Cat No. A5316, Sigma-Aldrich, St. Louis, MO). For immunofluorescence, the following antibodies were used: Anti-mouse Alexa fluor 488 secondary antibody (A-11001) and Alexa fluor 594 secondary antibody (Cat No. S11227) (Life Technologies, Grand Island, NY), villin (Cat No. 610359, BD biosciences, Franklin lakes, NJ). All antibodies were used according to manufacturer instructions.
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3

Investigating EMT-related Signaling Pathways

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The following primary antibodies were used: Anti-phospho-p38 (#9211), anti-p38 (#9212), anti-phospho-ERK1/2 (#4370), anti-E-Cadherin (#3195), anti-Snail (#4719) (all from Cell Signaling Technology, Frankfurt/Main, Germany), anti-HSP90 (both #sc-7947 and #sc-13119), anti-MKK6 (sc-6073), anti-TGF-β receptor I/ALK5 (V22, #sc-398), anti-TGF-β1 (3C11, #sc-130348) (all from Santa Cruz Biotechnology, Heidelberg, Germany), anti-ERK1/2 (#AF1576, R&D Systems, Wiesbaden, Germany) anti-Rac1b (#09-271, Merck Millipore, Darmstadt, Germany), anti-Rac1 (#610650), anti-Cip1/WAF1 (#610233) (both from BD Biosciences, Heidelberg, Germany), anti-β-actin (#A1978, Sigma, Deisenhofen, Germany). anti-Flag M2 (F3165, Sigma), HRP-linked anti-rabbit (#7074), anti-mouse (#7076) and anti-rat (#7077) secondary antibodies were from Cell Signaling Technology, anti-goat secondary antibody (#ab6741) was from Abcam (Cambridge, UK). Recombinant human (rh) TGF-β1 (#300-023) was purchased from ReliaTech (Wolfenbüttel, Germany) and used at a concentration of 5 ng/ml. The p38 inhibitor SB203580, the MEK1 inhibitor U0126 and the ALK5 inhibitor SB431542 were purchased from Calbiochem and used at a concentration of 10 μM (SB203580, UO126) and 5 μM (SB431542). Treatment of cells with these inhibitors for up to 48 h had no gross effect on cell viability.
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4

Western Blot Analysis of Signaling Pathways

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The following primary antibodies were used: Anti-phospho-ERK1/2 (#4370, Cell Signalling Technology, Frankfurt/Main, Germany), anti-HSP90 (both #sc-7947 and #sc-13119), anti-ERK1/2 (#AF1576) and phospho-Smad3(Ser423/425) (#AB3226), both from R&D Systems, Wiesbaden, Germany anti-Rac1b (#09-271, Merck Millipore, Darmstadt, Germany), anti-Rac1 (#610650), anti-CIP1/WAF1 (#610233) (both from BD Biosciences, Heidelberg, Germany), anti-proteasome (#PW-8195, Biomol, Plymouth Meeting, PA, USA), anti-HSP27 (#SA-348, Biomol), anti-MnSOD (#06-984, Upstate Cell Signaling Solutions, Lake Placid, NY, USA), anti-osgin (#H00029948-B01P, Abnova, Taipei, Taiwan), anti-β-actin (#A1978, Sigma-Aldrich, Deisenhofen, Germany). HRP-linked anti-rabbit (#7074), anti-mouse (#7076) and anti-rat (#7077) secondary antibodies were from Cell Signaling Technology, anti-goat secondary antibody (#ab6741) was from Abcam (Cambridge, UK). The rhTGF-β1 (#300-023) was purchased from ReliaTech (Wolfenbüttel, Germany) and used at a concentration of 5 ng/mL for the breast cancer cell lines and 10 ng/mL for HMEC.
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