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135 protocols using fetal calf serum (fcs)

1

Cell Culture Protocol for T24, 5637 BC, and A498 RCC Lines

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T24 and 5637 BC and A498 RCC lines were sourced from American Type Culture Collection (Rockville, MD, USA). T24 and 5637 BC were maintained in RPMI-1640 medium (Euroclone, Milan, Italy) supplemented with 10% heat-inactivated fetal calf serum (Euroclone), 2 mM L-glutamine, 100 IU/mL penicillin and 100 μg/mL streptomycin. A498 were maintained in MEM medium (Euroclone) supplemented with 10% heat-inactivated fetal calf serum, 2 mM L-glutamine, 100 IU/mL penicillin and 100 μg/mL streptomycin. All cell lines were maintained at 37 °C with 5% CO2 and 95% humidity.
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2

Evaluating HLA-E and NKG2A Roles

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Beas-2B (ATCC CRL-9609) bronchial epithelial cell line was grown in BEGM culture medium (BEGM Kit Catalog No. CC-3170; Lonza/Clonetics Corporation, USA) K562 (ATC CCL-243) lymphoblastoid cell line was cultured in RPMI (Gibco, Italy) supplemented with 10% of FCS (fetal calf serum, Euroclone, Pero, MI, Italy) and 100 U/mL penicillin, 100 µg/mL streptomycin. Cell cultures were maintained at 37° C in humidi ed atmosphere of 5% CO 2 in air.
The role of HLA-E and NKG2A was evaluated incubating the cells with anti-HLA-E (clone MEM-E/08, Exbio, Praha, CZ) or anti-CD94/NKG2A (clone 131411, BD, Italy) antibodies (7.5 ng/ml).
GATA3 DNA-binding activity was inhibited adding pyrrothiogatain (Santa Cruz; cat#sc-352288A) to cell cultures (10uM) 17 (link) . Data were analyzed using FACS CantoII ow cytometer (BD, Milan, Italy) and FlowJo LLC analysis software (Ashland, Oregon, USA). Ten thousand events were acquired.
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3

Amyloid-beta oligomers and fibrils cytotoxicity

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Cell viability was evaluated through the MTT assay. Briefly, SH-SY5Y cells were treated with increasing concentrations of Aβ1-42 oligomers and fibrils (from 1 to 10 µM) in DMEM supplemented with 1% FCS (both from Euroclone, Italy) v/v for 48 h. The MTT assay was performed by incubating cells for 2 h at 37 °C with DMEM supplemented with 1% FCS and MTT [1 mg/mL]. After removing the supernatant, 300 µL of DMSO were added to each well to solubilize the newly-formed purple formazan. An aliquot of the suspension was finally collected and the absorbance was read at 570 nm. Cell viability was expressed as the percentage compared to the basal condition.
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4

SARS-CoV-2 Leukocyte Isolation and Inactivation

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All assays on specimens taken during the acute phase, harboring potentially infectious virus, were performed in the BSL-4 facility at INMI. Leukocytes were isolated by lysing red cells with NH4Cl (Sigma-Aldrich, St. Louis, MS, USA), then washed in RPMI-1640 medium (Sigma-Aldrich, St. Louis, MS, USA) supplemented with 10% heat inactivated FCS (Euroclone, Italy) and stored at −80 °C in 90% FCS/10% DMSO (Euroclone, Italy). Cryopreserved leukocytes were rapidly thawed, washed with PBS and fixed with 10% paraformaldehyde (PFA) for 30 min at room temperature, to achieve virus inactivation. Fixed samples were transferred to BSL-2 laboratory for subsequent work.
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5

Isolation and Characterization of Renal Cancer Stem Cells

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Renal CSCs and RCC were isolated and characterized as previously described.6, 14 Briefly, cells were obtained from specimens of renal cell carcinomas from patients undergoing radical nephrectomy according to the Ethics Committee of the S. Giovanni Battista Hospital of Torino, Italy (168/2014). CSCs were isolated from the total RCC population, using anti‐CD105 Ab by magnetic‐activated cell sorting (MACS) system (Miltenyi Biotec, Auburn, CA). CD105 positive CSCs were cultured in the presence of the expansion medium, consisting of DMEM LG (Invitrogen, Carlsbad, CA), with insulin–transferrin–selenium, 10−9 M dexamethasone, 100 U penicillin, 1,000 U streptomycin, 10 ng/ml EGF (all from Sigma‐Aldrich, St. Louis, MO) and 5% fetal calf serum (FCS; Euroclone, MI, Italy). For cell cloning, single cells were seeded in 96‐well plates in the presence of the expansion medium. A G7 and a D2 CD105 positive clonal renal cell carcinoma stem cell line was selected and used for all the experiments. Total RCC population was maintained in culture in DMEM LG (Invitrogen), and 10% fetal calf serum (FCS) (Euroclone). Mycoplasma absence in primary cells in the study was routinely tested using RT‐PCR.
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6

Cell Line Characterization and Cultivation

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Human lung (H157),
colon (HCT-15 and
LoVo), and pancreatic (PSN-1) carcinoma cells were obtained from the
American Type Culture Collection (ATCC, Rockville, MD, USA). Human
cervical carcinoma A431 cells were kindly provided by Prof. F. Zunino
(Division of Experimental Oncology B, Istituto Nazionale dei Tumori,
Milan). Human ovarian adenocarcinoma 2008 cells were kindly provided
by Prof. G. Marverti (Dipartimento di Scienze Biomediche, Università
di Modena University, Italy). Human colon cancer cells resistant to
doxorubicin (LoVo MDR) were kindly provided by Prof. M. P. Rigobello
(Dipartimento di Scienze Biomediche, Università di Padova,
Italy). The LoVo-OXP cells were derived, using a standard protocol,
by growing LoVo cells in increasing concentrations of OXP and following
17 months of selection of resistant clones, as previously described.23 (link)Cell lines were maintained in the logarithmic
phase at 37 °C in a 5% carbon dioxide atmosphere using the following
culture media containing 10% fetal calf serum (EuroClone, Milan, Italy),
antibiotics (50 units/mL penicillin and 50 μg/mL streptomycin),
and 2 mM l-glutamine: (i) RPMI-1640 medium (EuroClone) for
A431, PSN-1, H157, HCT-15, and 2008 cells and (ii) Ham’S F-12
(Sigma Chemical Co.) for LoVo, LoVo MDR, and LoVo-OXP cells.
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7

Maintenance of Pancreatic Carcinoma Cell Lines

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Human pancreatic PSN-1 and BxPC-3 carcinoma cell lines were obtained by American Type Culture Collection (ATCC, Rockville, MD, USA). Cell lines were maintained in the logarithmic phase at 37 °C in a 5% carbon dioxide atmosphere using RPMI-1640 medium (EuroClone) containing 10% fetal calf serum (EuroClone, Milan, Italy), antibiotics (50 units/mL penicillin and 50 μg/mL streptomycin) and 2 mM l-glutamine.
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8

Culturing and Maintaining Dox-Resistant Ovarian Cancer Cells

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Cells and culture conditions: A2780 (human ovarian carcinoma) and A2780 Dox-resistant (A2780 res) cell lines were obtained from ATCC (Milan, Italy). The tumor cell lines were grown as monolayers in culture dishes in RPMI 1640 medium (Invitrogen, Burlington, ON, Canada), supplemented with 10% penicillin-streptomycin (Invitrogen) and 10% fetal calf serum (Euroclone, Milan, Italy), in a humidified atmosphere at 37 °C and 5% CO2. To maintain resistance, A2780 Dox-resistant cell medium was supplemented with 1 μg/mL of Dox once a week.
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9

Cultivation of Human Cancer Cell Lines

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Human lung (H157), colon (HCT-15), and breast (MCF-7) carcinoma cell lines were obtained by American Type Culture Collection (ATCC, Rockville, MD, USA). The human ovarian 2008 adenocarcinoma cells were kindly provided by Prof. G. Marverti (Dept. of Biomedical Science of Modena University, Modena, Italy). Human cervical (A431) carcinoma cells were kindly provided by Prof. F. Zunino (Istituto Nazionale per lo Studio e la Cura dei Tumori, Milan, Italy). Cell lines were maintained using the following culture media containing 10% fetal calf serum (Euroclone, Milan, Italy), antibiotics (50 units/mL penicillin and 50 μg/mL streptomycin), and l-glutamine (2 mM): (i) RPMI for HCT-15, A431, MCF-7 and 2008 cells; (ii) DMEM medium for A375 cells.
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10

Establishing Stable Transfected Cell Lines

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Horse Immortal Fibroblasts [75 (link)] and HeLa (human cervical carcinoma) cells were cultured in high-glucose D-MEM supplemented with 10 % fetal calf serum (Euroclone), 2 % non-essential amino acids, 2 mM L-glutamine and 1× penicillin-streptomycin (Sigma). For primary fibroblast cell lines, the culture medium was supplemented with 20 % fetal calf serum. Cells were routinely cultured at 37 °C in 5 % CO2.
Plasmid DNA for promoter reporter assays was prepared using QIAGEN Plasmid Midi kit. Transfections were carried out using the Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer’s protocol.
Twenty-four hours post-transfection, cells were selected adding 300 ng/ml (horse immortal fibroblasts) or 1 μγ/ml (HeLa cells) puromycin to the medium. Cells were cultured with selective medium until the emergence of drug-resistant colonies, that is 3 weeks for horse fibroblasts and 2 weeks for HeLa cells. Pools of about 50 colonies were obtained and grown as stably transfected cell populations.
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