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7 protocols using luciferase assay reagent 2 lar 2

1

Dual-Luciferase Assay for PDCD4 3'UTR

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The Dual-Luciferase reporter assay system (Promega) was used to measure the luciferase activity of cells cotransfected with wild-type and mutant PDCD4 3′-UTR vectors in combination with miRNA mimics. Firefly and luciferase activities were measured 24 h after transfection. The cells were washed with a phosphate-buffered saline (PBS) solution and lysed with 100 μl of passive lysis buffer (Promega) for 15 min at room temperature. The contents of each well were then freeze-thawed to complete lysis, and 20 μl of the lysate was added to individual wells of an opaque 96-well plate (PerkinElmer). This was followed by the addition of 100 μl of luciferase assay reagent II (LARII) (Promega). The Tecan Infinite 200 Pro spectrophotometer was then used to measure firefly activity. After this measurement, 100 μl of Stop & Glo reagent (Promega) was added to each well, and Renilla activity was measured. For each luminescence reading, there was a 2-s premeasurement delay, followed by a 10-s measurement period. Analyses of all samples were performed in triplicates, and luciferase activity was expressed as a Renilla/firefly ratio to normalize for cell number and transfection efficiency. Each transfection condition was calculated as a ratio of the control let-7a luciferase activity. This calculation was separately applied to each of the different mutant transfection conditions.
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2

Dual-Luciferase Reporter Assay System

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Cell lysates transfected with pGL3 vector constructs were prepared as described above, except the lysis solution was 1× Passive Lysis Buffer (PLB, Promega, Madison, WI, USA). Cell lysates were brought to room temperature, of which 20 μL was used to carry out the luciferase assays by the Dual-Luciferase Reporter Assay System (Promega), according to the manufacturer’s instructions, using 50 µL Luciferase Assay Reagent II (LAR II) (Promega, Madison, WI, USA) and 50 μL Stop & Glo Reagent (Promega, Madison, WI, USA). The measurements were carried out as described above, and sequential readings for firefly luciferase and Renilla luciferase were recorded.
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3

Dual-Luciferase Assay for circRBMS3 and miR-424

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The seeding of HEK293T cells took place into 96-well plates and underwent culture to 50–70% confluence prior to transfection. For circRBMS3 and miR-424, 600 ng plasmids of circRBMS3-wt and circRBMS3-mut, 20 nmol miR-424 and N.C. were transfected. Following incubation for 48 hours, the detection of firefly and Renilla luciferase activities was conducted by the Promega Dual-Luciferase system. For providing an internal reference, firefly luciferase activities were evaluated with a 100 ml Luciferase Assay Reagent II (LAR II) (Luciferase Assay Reagent, Promega), and then 20 ml lysis buffer, moreover 100 ml Stop and Glo® Reagent (Luciferase Assay Reagent, Promega) was utilized for evaluating Renilla luciferase activities. Calculation of the difference between a firefly and Renilla luciferase activities was to evaluate relative luciferase activity.
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4

Regulation of IKBKB 3'UTR by miR-214-3p

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HEK-293T cells were seeded in 6-well plates 24 h before transfection. 500 ng plasmids of IKBKB 3′UTR-wt and IKBKB 3′UTR -mut, 20 nmol miR-214–3p and NC were cotransfected with Lipofectamine 3000 (Invitrogen; Carlsbad, CA, USA) according to the manufacturer's instructions. After 48 h incubation, firefly and Renilla luciferase activities were calculated by the Promega Dual-Luciferase system according to the manufacturer's instructions. Luciferase Assay Reagent II (LAR II) (Luciferase Assay Reagent, Promega) was used to measure firefly luciferase activities while Stop & Glo® Reagent (Luciferase Assay Reagent, Promega) was used to measure renilla luciferase activities. Firefly/Renilla luciferase were measured to evaluate relative luciferase activity.
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5

Luciferase Assay for Gene Promoter Activity

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Two DNA fragments, 915bp and 931bp, flanking the putative transcriptional start site (TSS) of the genes D2HGDH and L2HGDH, respectively, were PCR-amplified, sequence verified and cloned into pGL3-basic vector (Promega). These constructs were co-transfected into HEK-293T cells with the pCMVβ-gal plasmid. In subsequent assays, the co-transfection also included a MYC expressing plasmid (pCDNA3-FLAG-MYC). Cells were harvested 24h after transfection, and luciferase and β-galactosidase activities measured, as we described(Ortega et al., 2015 (link)). In brief, the cells were in PBS, followed by addition of 250μl of reporter lysis buffer (Promega) and incubation for 20 minutes. The lysate was centrifuged for 30 seconds and the supernatant collected. Next, 20 μl of the cell lysate was transferred to a 1.5 ml of centrifuge tube containing 100μl of the Luciferase Assay Reagent II (LAR II) (Promega), followed by luminescence reading in luminometer. Concomitantly, 50 μl of cell lysate was incubated with 50 μl of Assay 2X Buffer (β-Galactosidase Enzyme Assay System, Promega). Incubation was performed at 37°C until a faint yellow color developed, at which time 150 μl of 1M Sodium Carbonate stop reaction was added, followed by absorbance reading . The primers sequences are listed in Supplementary Table S2.
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6

Dual-Luciferase Assay in HEK293T Cells

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The mammalian HEK293T cell line was used for the dual-luciferase reporter assay. The cells were cultured in DMEM (high glucose; Gibco, Life Technologies, Grand Island, NY, USA) with 10% FBS. Before transfection, the cells were plated in a 96-well tissue culture plate. After 24 h, two reporter plasmids (total of 10 ng per well) and the indicated plasmids (100 ng per well) were co-transfected using Lipofectamine™ 2000 Transfection Reagent (Invitrogen, Life Technologies, Grand Island, NY, USA). Approximately 48 h after transfection, Renilla and firefly luciferase activities were quantified using the Luciferase Assay Reagent II (LAR II) (Promega, Madison, WI, USA) on a Modulus™ single-tube multimode reader (Turner Biosystems, Sunnyvale, CA, USA) according to the manufacturer's instructions. The transfections were performed in triplicate. A paired t-test was used to determine significant differences.
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7

Dual-Luciferase Assay for CircGLCE-miR-587 and STAP1-miR-587 Interactions

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NP cells were seeded in 96-well plates and were cultured to 70%-80% confluence before transfection. For CircGLCE and miR-587 vector generation, either wild-type or mutant CircGLCE fragments (489 bp) were inserted into the Xba1 restriction sites of the pGL3-firefly luciferase vector. A total of 600 ng of plasmid (CircGLCE-wt and CircGLCE-mut) and 20 nmol miR-587 and NC were transfected. For STAP1 and miR-587, either wild-type or mutant STAP1 3’UTR fragments (116 bp) were inserted into the Xba1 restriction sites of the pGL3-firefly luciferase vector (Genechem, Shanghai, China). Five hundred nanograms of STAP1 3’UTR-wt and STAP1 3’UTR-mut plasmids and 20 nmol miR-587 and NC plasmids were transfected. After 48 h of incubation, a Promega Dual-Luciferase system was used to detect firefly and Renilla luciferase activities. Using 100 ml of Luciferase Assay Reagent II (LAR II) (Luciferase Assay Reagent, Promega) and, subsequently, 20 ml of lysis buffer, firefly luciferase activities were measured to provide an internal reference, and then Renilla luciferase activities were measured after the addition of 100 ml of Stop & Glo® Reagent (Luciferase Assay Reagent, Promega). Finally, the differences between firefly and Renilla luciferase activities were calculated to determine relative luciferase activity.
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