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9 protocols using luna hilic

1

Proline Quantification in C32 Cells

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Proline concentration in C32WT and C32POX− cells was measured with the use of the method published by Klupczynska et al. [74 (link)]. Samples were analyzed using Agilent 1260 Infinity HPLC system coupled to Agilent 6530 Q-TOF mass spectrometry detector with electrospray ionization as an ion source in positive ionization mode. Samples were injected onto an HILIC column (Luna HILIC, 2 × 100 mm, 3 µm, Phenomenex, Torrance, CA, USA). Methanol-extracted cell lysates were collected in triplicates and injected in duplicates. Total protein concentration was used for normalization and presented as percentage of control.
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2

HILIC Column Performance Evaluation

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Five different columns have been tested using the AF method prior the comparison with the AA method: (1) ACQUITY BEH-HILIC 1.7 µm, 2.1 × 100 mm (WATERS, Manchester, UK). (2) ACQUITY BEH-Amide, 1.7 µm, 2.1 × 100 mm (WATERS, Manchester, UK). (3) Halo Penta-HILIC, 2.7 µm, 2.1 × 100 mm (Advanced materials technology, Wilmington, DE, USA). (4) Luna HILIC 3 µm, 200 Å, 2 × 150 mm (Phenomenex, Le Pecq, France). (5) SeQuant ZIC-HILIC 3.5 µm, 200 Å, 2.1 × 100 mm, (Merck-Millipore, Fontenay sous-Bois, France).
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3

LC-MS Analysis of Proline Metabolite

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LC–MS analysis of proline was conducted according to the method of Klupczynska et al. [34 (link)]. Methanol-extracted proline was subjected to Agilent 1260 Infinity HPLC system coupled to Agilent 6530 Q-TOF mass spectrometry detector (Agilent Technologies, Santa Clara, CA, USA) with electrospray ionization as an ion source in positive ionization mode. L-proline-d3 (Sigma Aldrich, Saint Louis, MO, USA) was used as an internal standard. A HILIC column (Luna HILIC, 2 × 100 mm, 3 µm, Phenomenex, Torrance, CA, USA) was applied to separate the tested mixture. The samples were collected in three biological repeats, injected in duplicates, and randomized before analysis. Total protein concentration was used for normalization.
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4

Proline Quantification by HPLC-MS

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Proline concentration was measured according to the method of Klupczynska et al. [33 (link)]. Briefly, cells were analyzed by Agilent 1260 Infinity HPLC system coupled to Agilent 6530 Q-TOF mass spectrometry detector with electrospray ionization (Agilent Technologies, Santa Clara, CA, USA) as an ion source in positive ionization mode. Samples were injected onto a HILIC column (Luna HILIC, 2 × 100 mm, 3 μm, Phenomenex, Torrance, CA, USA) thermostated at 30 °C. Protein concentration was used to normalize the obtained results. The data was presented as a percent of the control value.
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5

Proline Quantification in HaCaT Cells

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Proline concentration in culture HaCaT cells was measured with the use of the method published by Klupczynska et al. [46 (link)]. Samples were analyzed using Agilent 1260 Infinity HPLC system coupled to Agilent 6530 Q-TOF mass spectrometry detector (Agilent Technologies, Santa Clara, CA, USA) with electrospray ionization as an ion source in positive ionization mode. Samples were injected onto a HILIC column (Luna HILIC, 2 × 100 mm, 3 µm, Phenomenex, Torrance, CA, USA). Methanol—extracted cell lysates were collected in triplicates and injected in duplicates. Total protein concentration was used for normalization and presented as µM/µg protein.
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6

Proline Quantification in HaCaT Cells

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LC–MS analysis of proline concentration in HaCaT cells was conducted according to the method of Klupczynska et al. [52 (link)]. Briefly, cells were harvested by scraping in ice-cold methanol with stable isotopically labeled proline (25 µM, d3-proline; Sigma Aldrich, Saint Louis, MO, USA) as an internal standard. Cell lysates were stored at −80 °C until analysis. Samples were analyzed using Agilent 1260 Infinity HPLC system coupled to Agilent 6530 Q-TOF mass spectrometry detector with electrospray ionization (Agilent Technologies, Santa Clara, CA, USA) as an ion source in positive ionization mode. Samples were injected onto a HILIC column (Luna HILIC, 2 mm × 100 mm, 3 µm, Phenomenex, Torrance, CA, USA) thermostated at 30 °C. All samples were randomized before analysis. The results were normalized to protein concentration and presented as a percent of the control value.
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7

Exerkine Plasma Profiling Protocol

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All exerkines were determined using plasma samples containing EDTA except for meteorin-like, that was determine in plasma samples containing heparin. BAIBA was determined by high-performance liquid chromatography (HPLC), according to the previously described methodology (Molfino et al., 2017) , by Agilent Liquid Chromatography System series 1100 (Agilent Technologies, USA) using columns from Phenomenex Luna HILIC (100 × 30 mm, Phenomenex, CA, USA). The kits used for the determination of the other exerkines plasma levels are pointed in Supplementary Table 1.
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8

Multi-column UPLC Analysis of Meconium

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The meconium and calibration samples were analyzed on an Acquity UPLC H-Class from Waters (Milford, MA, USA). Chromatographic development was accomplished with six columns: Ascentis Express C18, 150 × 2.1 mm, 2.7 µm from Supelco (Bellefonte, USA); Ascentis Express RP-Amide, 150 × 2.1 mm, 2.7 µm from Supelco (Bellefonte, USA); Ascentis Express Phenyl-Hexyl, 150 × 2.1 mm, 2.7 µm from Supelco (Bellefonte, USA); Acclaim Trinity P1, 150 × 2.1 mm, 3 µm from Thermo Fisher Scientific (Asheville, NC, USA); Ascentis Express HILIC, 150 × 2.1 mm, 2.7 µm from Supelco (Bellefonte, USA); and LUNA HILIC, 150 × 2.0 mm, 3 µm from Phenomenex (Torrance, CA, USA).
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9

HILIC-MS/MS for Compound Quantification

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The liquid chromatographic system was an Agilent 1260 Infinity High Pressure LC (HPLC) fitted with a degasser, a binary high-pressure gradient pump, a thermostated column compartment and an autosampler module. Chromatographic separation was achieved using a Phenomenex Luna HILIC (hydrophilic interaction liquid chromatography) 200 Å (150 x 3 mm, 5 µm) column, with a mobile phase composed of A) 5 mM AmOAc in ultrapure water and B) MeCN, at a flow rate of 0.4 mL/min. The gradient was as follows: 0-0.5 min: 95% B; 0.5-5 min: 95%-90% B; 5-12.5 min: 90%-70% B; 12.6-14.6 min 30% B; 14.7 min 95% B.
The total run time including column equilibration was 19 min. The injection volume was optimized based on peak shape and set to 2 µL. The LC system was coupled to an Agilent 6410 triple quadrupole mass spectrometer with an electrospray interface (ESI) for the detection and quantification of compounds. Source parameters were as follows: gas temperature 350 °C, gas flow 10 L/min, nebulizer 40 psi, capillary voltage 4000 V. The mass spectrometer compound dependent parameters were optimized for each compound individually (Table 1).
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