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Rnascope red 2.5 kit

Manufactured by Advanced Cell Diagnostics

The RNAscope RED 2.5 kit is a product from Advanced Cell Diagnostics designed for in situ hybridization analysis. The kit enables the detection and visualization of target RNA molecules within intact cells and tissues.

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7 protocols using rnascope red 2.5 kit

1

Rapamycin-induced Autophagy Regulation

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Rapamycin was purchased from LC Laboratories (Woburn, MA). HeLa cells were purchased from ATCC (Manassas, VA). The p62 and NBR1 assay kit was purchased from Enzo Life Sciences (Framingale, NY). The Rabbit polyclonal p62 and NBR1antibody was purchased from Cell Signaling Technology (Danvers, MA) and ThermoFisher scientific (Grand Island, NY). For in situ hybridization RNAscope RED 2.5 kit (Cat# 322360) was purchased by Advanced Cell Diagnostics (ACD) and 20 ZZ probes against mouse SQSTM1/p62 (Cat# 444221) were synthesized and purchased from ACD.
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2

Zika Virus Detection by ISH Assay

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ISH probes against the ZIKV genome were commercially purchased (cat# 468361, Advanced Cell Diagnostics, Newark, CA). ISH was performed using the RNAscope® Red 2.5 kit (cat# 322350, Advanced Cell Diagnostics, Newark, CA) according to the manufacturer’s protocol. After deparaffinization with xylene, a series of ethanol washes, and peroxidase blocking, sections were heated with the antigen retrieval buffer and then digested by proteinase. Sections were then exposed to the ISH target probe and incubated at 40°C in a hybridization oven for two-hours. After rinsing, ISH signal was amplified using the provided pre-amplifier followed by the amplifier-containing labelled probe binding sites, and developed with a Fast Red chromogenic substrate for 10 minutes at room temperature. Sections were then stained with hematoxylin, air-dried, and mounted.
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3

In Situ Hybridization of SQSTM1/p62 in Mice

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In situ hybridization was performed using RNAscope RED 2.5 kit (Cat# 322360) by Advanced Cell Diagnostics (ACD). Briefly, 20 ZZ probes against mouse SQSTM1/p62 (Cat# 444221) were synthesized and purchased from ACD. After deparaffinization and peroxidase blocking, sections were covered with ISH probes and incubated at 40°C in hybridization oven for 2 h. They were rinsed and the ISH signal is amplified by applying Pre‐amplifier and Amplifier conjugated with HRP. A red substrate‐chromogen solution was applied for 10 min at 22°C. The slides were further stained with hematoxylin, air dried, and mounted.
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4

Zika Virus In Situ Hybridization

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In situ hybridization (ISH) was conducted with tissues fixed in 4% PFA, and alcohol processed and paraffin embedded. ISH probes against Zika genome were purchased commercially (Advanced Cell Diagnostics, Cat No. 468361, Newark, California, USA). ISH was performed using the RNAscope® Red 2.5 Kit (Advanced Cell Diagnostics, Cat No. 322350) according to the manufacturer’s instructions. Briefly, after deparaffinization with xylene, a series of ethanol washes, and peroxidase blocking, sections were heated in boiling antigen retrieval buffer for 15 minutes and then digested by proteinase K (2.5 μg/ml, to completely cover the section) for 16 minutes at 40°C. Sections were exposed to ISH target probe and incubated at 40°C in a hybridization oven for 2 h. After rinsing, ISH signal was amplified using company-provided Pre-amplifier and Amplifier conjugated to horseradish peroxidase (HRP), and incubated with a red substrate-chromogen solution for 10 min at room temperature.
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5

In situ Hybridization of Placental Tissue for ZIKV

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In situ hybridization was conducted on cross sections of placental cotyledons as described previously (22 (link)). Briefly, tissues were fixed in 4% PFA, alcohol processed, and paraffin embedded. Commercial ISH probes against the ZIKV genome (catalog no. 468361; Advanced Cell Diagnostics, Newark, CA, USA) were used. ISH was performed using the RNAscope Red 2.5 kit (catalog no. 322350; Advanced Cell Diagnostics) according to the manufacturer's instructions.
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6

In Situ Hybridization of Zika Virus

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ISH probes against the ZIKV genome were commercially purchased (cat# 468361, Advanced Cell Diagnostics, Newark, CA). ISH was performed using the RNAscope Red 2.5 kit (cat# 322350, Advanced Cell Diagnostics, Newark, CA) according to the manufacturer’s protocol. After deparaffinization with xylene, a series of ethanol washes, and peroxidase blocking, sections were heated with the antigen retrieval buffer and then digested by proteinase. Sections were then exposed to the ISH target probe and incubated at 40°C in a hybridization oven for two-hours. After rinsing, the ISH signal was amplified using the provided pre-amplifier followed by the amplifier-containing labeled probe binding sites, and developed with a Fast Red chromogenic substrate for 10 minutes at room temperature. Sections were then stained with hematoxylin, air-dried, and mounted.
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7

In Situ Hybridization Visualization of ZIKV

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ISH probes against the ZIKV genome were commercially purchased (cat# 468361, Advanced Cell Diagnostics, Newark, CA). ISH was performed using the RNAscope® Red 2.5 kit (cat# 322350, Advanced Cell Diagnostics, Newark, CA) according to the manufacturer’s protocol. After deparaffinization with xylene, a series of ethanol washes, and peroxidase blocking, sections were heated with the antigen retrieval buffer and then digested by proteinase. Sections were then exposed to the ISH target probe and incubated at 40°C in a hybridization oven for two-hours. After rinsing, ISH signal was amplified using the provided pre-amplifier followed by the amplifier conjugated to alkaline phosphatase l, and developed with a Fast Red chromogenic substrate for 10 minutes at room temperature. Sections were then stained with hematoxylin, air-dried, and mounted prior to imaging using a Leica DM 4000B microscope equipped with a Leica DFC310FC camera and Surveyor software (Version 9.0.2.5, Objective Imaging, Kansasville, WI).
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