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9 protocols using rpn2109

1

Comprehensive Protein Detection Assay

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H-ferritin Western blotting was performed with rabbit anti-human H-ferritin antibody (Santa Cruz; sc-376594; 400ng/mL), followed by HRP-labeled anti-rabbit IgG antibody. To detect Pit-1, Pit2 and LAMP1 were used rabbit anti-human Pit1 antibody (Abcam; ab177147; 2000 ng/mL), rabbit anti-human Pit2 antibody (Proteintech; 12820–1-AP; 60 ng/mL), rabbit anti-human-LAMP1 antibody (Abcam; ab24170; 1000 ng/mL). Western blot analysis for ENPP2 was performed using anti-human ENPP2 (Thermo Fisher Scientific; PA5–12478; 4000 ng/mL). Sox9 Western blot was performed with rabbit anti-human Sox9 (Abcam; ab26414; 2000 ng/mL). Western blots were performed with: rabbit anti-human Sox9 (Abcam; ab26414; 2000 ng/mL) and rabbit anti-human RUNX2 (Proteintech; 20700-I-AP; 400 ng/mL); rabbit anti-human TNF-α (Thermo Fisher Scientific; PA5–19810; 400 ng/mL); rabbit anti-human IL1-β (Invitrogen; 17h18l16; 400 ng/mL). Complexes of antigen-antibody were visualized with a horseradish peroxidase chemiluminescence detection system (Amersham Biosciences; RPN2109). Membranes were reprobed with glyceraldehyde-3-phosphate dehydrogenase (GAPDH).
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2

Western Blot Analysis of MCT4, Erk, and TRPV1

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The cell lysates were mixed with 4× Laemmli sample buffer (Bio-Rad) and heated at 95 °C for 5 min. The samples were electrophoresed in 4–12% SDS-PAGE gels, and the proteins were transferred onto PVDF membranes (Bio-Rad). The membranes were incubated with primary and secondary antibodies according to the ECL chemiluminescence protocol (RPN2109; Amersham Biosciences, Buckinghamshire, UK) to detect secondary antibody binding. Antibodies against MCT4 (1:1000), p-Erk (1:1000), Erk (1:1000) and TRPV1 (1:1000) were used as a primary antibody. HRP-conjugated anti-rabbit antibody (1:2000) and HRP-conjugated anti-mouse antibody (1:2000) were used as the secondary antibody. A BZ-X microscope (Keyence) was used for the analysis of western blots.
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3

SDS-PAGE and Western Blot Analysis

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Cells or NET-precipitated proteins were lysed on ice in SDS lysis buffer (2% SDS, 62.5 mM Tris at pH 6.8, 5% 2-mercaptoethanol, 10% glycerol) supplemented with Complete Roche Inhibitor Cocktail (Complete tablets Mini Easypack [catalog 04693124001] and PhosSTOP Easypack [catalog 04906837001]) and centrifuged at 13,000g for 15 minutes at 4°C. Whole-cell lysates (20–30 μg protein) were subjected to SDS-PAGE electrophoresis on 12.5% gels and then transferred to an Immobilon-PSQmembrane (catalog SEQ85R; Millipore). Membranes were blocked with 5% skimmed milk in TBS plus Tween 20 and then incubated with anti-MPO (1:3000 dilution; Dako) as loading control (78 (link)) or anti–IL-33 (1:1000 dilution) specific antibodies (mouse “Nessy” antibody; R&D). For HL-60 protein extracts, mouse anti–human tubulin antibody was used as loading control (1:3000 dilution, catalog A11126; Thermo Fisher Scientific). Detection was performed using relevant HRP-linked antibodies (anti–goat-HRP, anti–rabbit-HRP, anti–mouse-HRP; catalog AP180P, 12-348, and 12-349, respectively; all purchased from Millipore) and enhanced chemiluminescent-detection reagents (Amersham Biosciences, RPN2109). Unedited gels are provided in the online supplement.
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4

Protein Expression Profiling in Biological Samples

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The following primary antibodies were used in the project: rabbit anti-human TNF-α (Thermo Fisher Scientific; PA5-19810; 400 ng/mL), rabbit anti-human IL-1β (Invitrogen; 17 h18l16; 400 ng/mL), rabbit anti-human ALP (Abcam; ab65834; 1000 ng/mL), rabbit anti‐human CSE (Proteintech Group; 12217‐1‐AP; 1000 ng/mL); rabbit anti-human SO (Thermo Fisher Scientific; PA5-21705; 1 mg/mL), rabbit anti-human ETHE1 Thermo Fisher Scientific; PA5-56040; 0,30 mg/mL), rabbit anti-human SQR (Proteintech Group; 17256-1-AP; 550 μg/mL), rabbit anti-human TST (Abcam; ab166625; 0.08 mg/mL) and rabbit anti-human CBS (Proteintech Group; 14787-1-AP; 700 μg/mL). HRP-labeled anti-rabbit or anti-mouse IgG secondary antibodies were used. Complexes of antigen-antibody were visualized with a horseradish peroxidase chemiluminescence detection system (Amersham Biosciences; RPN2109). After developing signals, membranes were stripped and incubated with glyceraldehyde-3-phosphate dehydrogenase (GAPDH).
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5

CEACAM6 Antibody Validation by Western Blot

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Western Blot analysis was used to confirm specificity of the detection antibody provided in the ELISA kit. Samples were heat denatured, separated by 4–20% SDS-PAGE gel (Bio-Rad #456–1095), and transferred to 0.45 μm nitrocellulose membrane. The primary antibody was the biotinylated CEACAM6 detection antibody provided in the ELISA kit (1.5 μg/ml final concentration). Final detection was accomplished using the ELISA provided streptavidin horseradish peroxidase conjugate (1:2000 final dilution) and chemiluminescent substrate (Amersham #RPN-2109).
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6

Analyzing HMGB1 Isoform Effects on Neuronal Excitation

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The cell lysates were mixed with 4X Laemmli sample buffer (Bio-Rad Laboratories, Inc.) and heated at 95°C for 5 min. The samples were electrophoresed on 4–12% SDS-PAGE gels, and the proteins were transferred onto PVDF membranes (Bio-Rad Laboratories, Inc.). The membranes were incubated with primary and secondary antibodies according to the ECL chemiluminescence protocol (RPN2109; Amersham Biosciences) to detect secondary antibody binding. Antibodies against HMGB1 (1:1,000), TLR-4 (1:500), RAGE (1:1,000), p-ERK (1:1,000), ERK (1:1,000), TRPV1 (1:1,000), and β-actin (1:10,000) were used as the primary antibodies. HRP-conjugated anti-rabbit antibody (1:2,000) and HRP-conjugated anti-mouse antibody (1:2,000) were used as the secondary antibodies.
We evaluated the effects of three redox forms of HMGB1 on sensory neuronal excitation. Cells of the DRG neuronal cell line 50B11 were cultured on 6-well plates (5×104/well) in DMEM and incubated for 24 h after the addition of each isoform of HMGB1 (HMGB1 Isoform Kit, #HM-030, HMGBiotech). The protein was then collected. A ChemiDoc MP system (Bio-Rad Laboratories, Inc.) was used for the analysis of the western blots.
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7

CEACAM6 Quantification in Bile Samples

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CEACAM6 concentrations were determined by a commercial enzyme-linked immunosorbent assay (SEK10823, Sino Biological, Beijing, China). Bile was diluted ten-fold in sample buffer and analyzed in duplicate. Samples were incubated on plates coated with provided capture antibody, washed, and further incubated with provided detection antibody. Quantification was accomplished using provided streptavidin horseradish peroxidase conjugate and chemiluminescent substrate (Amersham #RPN-2109). Total bile salt concentrations were determined by 3-α-hydroxysteroid dehydrogenase (3-α-HSD) analysis and utilized as a surrogate for bile concentration.[26 (link)]
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8

Western Blot Analysis of MTHFR

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Western blotting analysis was performed using as primary antibody 1:2000 diluted monoclonal mouse anti-flag (#F3165, Sigma) to target MTHFR or 1:5000 diluted monoclonal mouse anti-β-Actin antibody (#A1978, Sigma) as loading control, and as secondary antibody 1:5000 diluted mouse IgG kappa binding protein conjugated to Horseradish Peroxidase (#sc-516102, Santa Cruz). Nitrocellulose membranes (#10600007, Cytiva) were developed using enhanced chemiluminescence detection reagents (#RPN2109, Cytiva, Amersham ECL Western Blotting Analysis System) and imaged with a ChemiDoc Touch Imaging System (Bio-Rad). Uncropped images are available in Source data.
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9

Western Blot Analysis of Respiratory Proteins

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For western analysis of respiratory proteins, WCEs were prepared by trichloroacetic acid extraction as previously described (Reid and Schatz, 1982 (link)) and immunoblot analysis was conducted as described previously (Nanda et al., 2009 (link)). After electroblotting to polyvinylidene fluoride (PVDF) membranes (Millipore, IPVH00010), membranes were probed with antibodies against Aco1, Atp20, Cox14, Pet10 (a kind gift from Dr. Nikolaus Pfanner), Idh1 (Abnova, PAB19472), and GAPDH (Proteintech, 60004). Secondary antibodies employed were HRP-conjugated anti-rabbit (GE, NA9340V), anti-mouse IgG (GE, NA931V), and anti-goat IgG (Abnova, PAB29101). Detection was performed using enhanced chemiluminescence (ECL, Cytiva, RPN2109) and the Azure 200 gel imaging biosystem.
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