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40 protocols using blyscan glycosaminoglycan assay kit

1

Decellularization and Quantification of Lenticules

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Of all protocols, the decellularization methods, which efficiently removed nuclear materials examined as detected by immunofluorescent staining, were quantitatively tested for sample DNA and GAG contents. The lenticules were lyophilized in a freeze dryer (FD5512, IlShin, Gyeonggi-do, Korea) and weighed. The DCLs were digested in 0.2 M sodium phosphate buffer (pH 6.4) containing 125 μg/mL papain (Sigma), 10 mM cysteine hydrochloride (Sigma), 0.1 M sodium acetate (Junsei, Tokyo, Japan), and 2 mM EDTA (Sigma) for 3 h at 65°C as described previously [25 (link)]. The DNA content was measured by using a DNA quantitation kit (Bio-Rad, Hercules, CA, USA) according to the manufacturer's protocol. Briefly, 5 μL solution of dissolved lenticules (10 mg/mL) was added to 1 mL TEN buffer (100 mM Tris, 2 M NaCl, 10 mM EDTA, pH 7.4) containing Hoechst 33528 (1 μg/mL). Fluorescence intensity was read using a 460 nm emission filter with a microplate reader (FLUOstar OPTIMA, BMG LABTECH, Ortenberg, Germany). The DNA contents were calculated from a standard curve determined by using calf thymus DNA.
Sulfated GAG in the DCL was measured with a Blyscan™ glycosaminoglycan assay kit (Biocolor, County Antrim, UK). GAG quantification was performed according to the manufacturer's protocol. Absorbance was measured using a VersaMax microplate reader (Molecular Devices, Sunnyvale, CA, USA) at 656 nm.
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2

Quantification of GAG and DNA in Engineered Cartilage

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For the DNA content, frozen samples were weighed and DNA extracted and purified with the DNeasy kit (Qiagen Inc., Valencia, CA). Total DNA content was determined using the PicoGreen dsDNA assay (Invitrogen). For GAG quantification, minced samples were lyophilized for 24 hours and digested overnight at 60°C in 125 µg/mL papain type III (Sigma-Aldrich) in phosphate buffer with EDTA pH 6.5 (100 mM disodium phosphate, 10 mM ethylenediaminetetraacetic acid, and 10 mM l-cysteine). GAG content was determined spectrophotometrically using the Blyscan Glycosaminoglycan Assay Kit (Biocolor Ltd., Carrickfergus, UK). The GAG and DNA content in engineered cartilage was expressed as % of native GAG and % of native GAG/DNA ratio. The GAG content averaged 118.4 ± 40.5 and 141.2 ± 25.3 µg/mg dry tissue for sheep and human native auricular cartilage, respectively. GAG/DNA ratio was 1.0 ± 0.2 for both species.
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3

Glycosaminoglycan Quantification Protocol

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The minced samples were digested by incubation in 10 mg/mL pepsin and 0.05 M acetic acid at 4 °C. After 48 h, 1 mg/mL pancreatic elastase and 10 × tris-buffered saline (TBS) were added to the solution, and the samples were incubated at 4 °C overnight. Subsequently, the samples were centrifuged at 12,000 g for 5 min to remove the debris. GAGs in the supernatants were quantified using a Blyscan Glycosaminoglycan Assay Kit (Biocolor Ltd., United Kingdom) according to the instructions provided by the manufacturer.
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4

Quantifying GAG and dsDNA Content

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GAG content was quantified with Blyscan Glycosaminoglycan Assay Kit (Biocolor), and double-stranded DNA (dsDNA) content was assayed using Quant-iT PicoGreen dsDNA Assay Kit (Thermo Fisher Scientific). All experimental procedures were performed strictly following the manufacturer’s manual.
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5

Comprehensive Biochemical Analysis of Tissue

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Biochemistry samples were weighed wet, then frozen and lyophilized to acquire dry weights. Collagen content was measured with the use of a Sircol standard (Biocolor) and a modified chloramine-T colorimetric hydroxyproline assay (Cissell et al., 2017 (link)). GAG content was quantified using the Blyscan Glycosaminoglycan assay kit (Biocolor). All quantification measurements for collagen and GAG content were performed with a GENios spectrophotometer/spectrofluorometer (TECAN).
Quantification of pyridinoline crosslink content was performed via a liquid chromatography mass spectrometry (LC-MS) assay (Naffa et al., 2019 (link)). Lyophilized samples were hydrolyzed in 6N HCl at 105°C for 18 h. After evaporation, dried hydrolysates were resuspended in 25% (v/v) acetonitrile and 0.1% (v/v) formic acid in water, centrifuged at 15,000 g for 5 min, and the supernatant was transferred to a LCMS autosampler vial. Liquid chromatography was carried out on a Cogent Diamond Hydride HPLC Column (2.1 mm × 150 mm, particle size 2.2 μm, pore size 120 Å, MicroSolv) and a pyridinoline standard (BOC Sciences) as previously described (Gonzalez-Leon et al., 2020 (link)).
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6

Extracellular Matrix Composition Analysis

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For ECM content, wet weight (WW) and dry weight (DW) of the samples were measured, and specific assays were used to quantify collagen content and glycosaminoglycan content. First, the samples were frozen to allow for sublimation during a 72hr lyophilization cycle. After lyophilization, DWs were measured, and the tissue was digested in a buffered papain solution for 18hr at 65°C. The glycosaminoglycan and collagen contents were normalized per WW and is reported in percentage. Glycosaminoglycan content was measured using a BioColor Blyscan glycosaminoglycan assay kit according to the manufacturer’s directions. The total collagen content was measured using a modified chloramine T hydroxyproline assay and a Sircol collagen standard, as previously described (58 (link)).
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7

Quantifying Sulfated Glycosaminoglycans in NPCs

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The micromass of the mNPCs or the hNPCs was first digested with 0.05% papain (Sigma‐Aldrich) for 3 h at 65 °C with shaking. Thereafter, the sulfated GAG content was measured by a dimethylmethylene blue dye‐binding assay (Blyscan Glycosaminoglycan Assay Kit, Biocolor, Westbury, NY) with a kit containing chondroitin sulfate as the standard. Cellularity was measured according to the double‐stranded DNA (dsDNA) content using a Qubit 3.0 Fluorometer (Thermo Fisher Scientific) and the Qubit dsDNA HS Assay kit (Thermo Fisher Scientific).
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8

Quantifying Sulfated Glycosaminoglycans in BMP-2

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The BMP-2 pellets were digested with 0.05% papain (Sigma-Aldrich, St. Louis, MO, United States) for 18 h at 65°C. Then, the amounts of the sulfated glycosaminoglycans (sGAGs) were measured using a dimethylmethylene blue dye-binding assay (Blyscan™ Glycosaminoglycan Assay Kit, Biocolor, Westbury, NY, United States).
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9

Isolation and Characterization of Engineered DIAS Cells

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Human DIAS cells isolated from foreskin were selected based on in vivo results. Foreskin-derived hDIAS cells were grown in ARC in which cells were seeded at 7.5x106 cells/mL in petri dishes coated with 1% agarose and cultured in CHG containing 10 ng/mL TGF-β1, 100 ng/mL GDF-5 (Propotech), and 100 ng/mL BMP-2 at 37°C for 7 days on an orbital shaker at 60 rpm [37 (link)]. Aggregates were digested with 0.05% trypsin-EDTA for 20 minutes followed by 0.2% collagenase solution containing 3% FBS for 1 hour with agitation every 15 minutes to release cells. The resulting cells were filtered through 70 μm cell strainers and counted. Human DIAS cell constructs using ARC and non-aggregate cultured (control) hDIAS cells were formed via the self-assembling process as described above. For biochemical analysis, lyophilized samples were digested using papain as previously described [38 (link)]. Sulfated GAG content was assayed using the Blyscan Glycosaminoglycan Assay kit (Biocolor, Westbury, NY). Total collagen content was quantified using a hydroxyproline assay (Biocolor) [39 (link)]. DNA content was determined using the PicoGreen® dsDNA Assay Kit (Life Technologies) [40 (link)]. Mechanical testing was performed as described above.
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10

Quantifying Chondrogenic Potential via S-GAG

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After chondrogenic differentiation, the aggregates were digested for 18 h at 65 °C with 125 μg/mL papain in PBE buffer (10 mM EDTA and 100 mM sodium phosphate) pH 6.5, containing 5 mM L-cysteine–HCl. A total of 500 μL of enzyme preparation was used per sample. Chondrogenic potential was quantified by measuring the production of sulfated glycosaminoglycans (S-GAG) using the 1,9-dimethylmethylene blue (DMMB) assay, according to the manufacturer’s recommendations (Blyscan™ glycosaminoglycan assay kit, Biocolor, Carrickfergus, County Antrim, UK). Absorbance was measured at 656 nm using a microplate reader (Sunrise™, TECAN, Männedorf, Switzerland).
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