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Gcms qp5050

Manufactured by Shimadzu
Sourced in Japan

The GCMS-QP5050 is a gas chromatograph-mass spectrometer (GC-MS) system manufactured by Shimadzu. It is designed for the analysis and identification of a wide range of organic compounds. The system combines the separation capabilities of gas chromatography with the detection and identification capabilities of mass spectrometry.

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11 protocols using gcms qp5050

1

Volatile Profiling of Saffron and Freesia

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In order to detect volatile components of saffron and freesia “f2” flowers, we carried out a gas chromatography-mass spectrometry (GC-MS) analysis. Each 0.1 g of their dried materials was ground with an addition of 0.3 ml of water (H2O) and 0.3 ml of MeOH, subsequently extracted with 0.6 ml of chloroform (by mixing and centrifugation), and the chloroform extraction was repeated by adding 0.5 ml of H2O, and finally, each chloroform phase was concentrated to threefold by decompression. The prepared samples were subjected to GC-MS using Shimadzu GCMS-QP5050 (Shimadzu, Kyoto, Japan), as described (15 (link)).
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2

Pyrolytic Analysis of Lignin in Oak and Eucalyptus

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Samples of about 1.5 mg of the isolated AL from oak and eucalyptus wood were heated to 450 °C using a Pyrojector II (SCE Analytical Science, Trajan Scientific and Medical, Melbourne, Australia), connected to a GCMS-QP5050 instrument (Shimadzu Corporation, Kyoto, Japan). Helium was the carrier gas at a pressure of 100 kPa in the pyrolyzer and 70 kPa in the GC injector (280 °C, 1:20 split ratio). Furnace temperature was initially set at 45 °C for 4 min, then increased to 240 °C at a rate of 4 °C min−1, and finally to 280 °C at a rate of 39 °C min−1. The mass spectrometer was used in electron ionization (EI) mode at 70 eV and scans from m/z 35 to 500 were run in 0.7 s cycles. The pyrolysis products were identified by comparing their mass spectra with those of the NIST and Wiley libraries and those reported in literature as published in earlier works [26 (link),27 (link),28 (link),30 (link)]. The peaks of interest were identified, the spectra were normalized to the most intense peak, and the respective peak areas were expressed as percentages.
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3

Characterization of Anti-Inflammatory Compounds

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Melting points were determined in open capillary Toshniwal melting point apparatus (Toshniwal Instruments, Chennai, India). Infrared spectra were recorded on Shimadzu FT-IR-8300/8700 as KBr disc (v/cm-1). Purity of compounds was routinely checked by TLC on silica gel (Merck, Darmstadt, Germany). The mass spectra of OSD and OPD were obtained using Shimadzu GC-MS QP5050. IR spectra were recorded on Shimadzu spectrophotometer with KBr pellets. NMR spectra were taken on spectrometer at 400 MHZ.
λ-Carrageenan, complete Freund's adjuvant (CFA), o-dianisidine hydrochloride, 2’,7’-dichlorofluorescein diacetate (DCFH-DA), lipopolysaccharide from E. coli 0111:B4 (LPS) and Dulbecco's Modified Eagle's Medium (DMEM) were purchased from Sigma-Aldrich Co. LLC., St.Louis, MO, USA. Fetal Bovine Serum (FBS) was purchased from Gibco®, Life Technologies Corporation, NY, USA. Murine macrophage cell-line RAW 264.7 was purchased from National Centre for Cell Science, Pune, MH, India. The various chemicals used in this work were of analytical grade.
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4

Structural Analysis of Novel Antimicrobial Agent

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(A) Mass spectroscopy: mass spectroscopy was carried out using Direct Inlet Unit (DI-50) of SHIMADZU GC/MS-QP5050 A. Software: Class 5000. Ionization model: EI. Ionization voltage: 70 ev. Scan speed: 2000 amu/sec. Scan interval: 0.5 sec, at the Regional Center for Mycology and Biotechnology, Al-Azhar University
(B) Infrared (IR) spectra: infrared spectrum of the new antimicrobial agent was conducted in potassium bromide using Fourier Transform infrared and Pye Unicam SP300 IR spectrophotometer at the Micro-Analytical Center, Cairo University
(C) The proton nuclear magnetic resonance (1H-NMR): 1H-NMR was conducted in deuterated chloroform using Varian Gemini 200 and 300 MHz NMR spectrophotometer at the Micro-Analytical Center, Cairo University.
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5

GC-MS Volatile Compound Analysis

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Volatile organic compounds produced by G341 strain were analyzed by GC-MS (Shimadzu GC-MS QP5050, Shimadzu co., Kyoto, Japan). A 1-μl aliquot of methylene chloride solution containing volatile compounds was injected into the injection port of the GC-MS. A capillary column SPB-5 (30 m × 0.25 mm in i.d., 0.25 μm in film thickness; PA, USA) was used. The initial temperature of the column was held at 30°C for 2 min and increased to 220°C at 5°C min−1. The injection port and interface were set at 240°C and 200°C, respectively. Helium carrier gas was used at a flow rate of 2.2 ml min−1. Mass spectra of unknown compounds were compared to those deposited in the NIST/EPA/NIH Mass Spec. Library (Version 2.0).
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6

Pyrolysis Analysis of PU-3:1 Sample

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About 1.5 mg of the sample PU-3:1 was pressed in a special syringe and directly pyrolyzed at 450 °C in a Pyrojector II (SGE Analytical Science, Trajan Scientific and Medical, Melbourne, Australia). The pyrolysis chamber was maintained at 450 °C. Pyrolysis products were separated in a GCMS-QP5050 instrument (Shimadzu Corporation, Kyoto, Japan). Helium was the carrier gas at a pressure of 100 kPa in the pyrolyzer and 70 kPa in the GC injector (280 °C, 1–20 split ratio). The initial temperature in the oven was 45 °C for 4 min, then increased to 240 °C at a rate of 4 °C min−1 and finally until 280 °C at a rate of 39 °C min−1. Pyrolysis products were identified by mass spectra interpretation and comparison with NIST and Wiley computer libraries and reference literature [28 (link),29 (link)]. For each pyrogram, normalized at the most intense peak, the relative peak areas of 26 principal phenolic lignin pyrolysis products as well as the respective PU pyrolysis products were determined.
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7

Synthesis and Characterization of Novel Heterocyclic Compounds

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All utilized starting ingredients—benzoyl isothiocyanate, 2,6-diaminopyridine, metallic salts, and solvents—were bought from viable vendors (Merck or Sigma-Aldrich) and used instantly with no extra purifications. The molecular structures of the isolated substances have been clarified through the subsequent strategies:
C, H, N, and S contentC, H, N, and S contents were obtained using Thermo-Fisher Scientific Analyzer Model: Flash 2000
Metal and Cl¯ contentsUsing described approaches in Vogel's Textbook of Quantitative Chemical Analysis18
UV–VisUnicam UV–Vis spec. in 1 × 10−4 M concentration in DMSO solvent
FT-IR spectraMattson 5000 (4000–400cm−1, KBr discs)
Mass spectraDI-50 unit-Shimadzu GC–MS-QP5050A
Magnetic momentSherwood magnetic balance at 32 °C
1H, 13C-NMRJEOL ECA-500 II
P-XRDShimadzu XRD 6000 diffractometer (Japan), Cu anode, Ka: 0.154060 nm, 2θ = 5–80°
TGAPerkin Elmer TGA 4000, 30–900 °C, N2 flow 20 ml/min, Rate of heating 10 °C/min
Morphology studiesSEM, JOEL JSM 6510 lv. TEM, JOEL JEM 2100
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8

GC-MS Analysis of VOCs from JCK Cell Lines

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VOCs released by JCK-1618 and JCK-1696 were analyzed by gas chromatography-mass spectrometry (GC-MS; Shimadzu GC-MS QP5050, Shimadzu Co., Kyoto, Japan). The volatile trap containing VOCs was injected into the injection port of the GC-MS. Each run was performed for 41 min in the split-less injection mode. The cycle was initialized at 30°C for 2 min and then increased to 250°C at 10°C per min. The carrier gas (helium) was administered at a flow rate of 3 ml per min. The mass spectra of unknown VOCs were compared to those submitted in the NIST/EPA/NIH Mass Spec. Library (version 2.0). The quantities of VOCs were expressed as relative area concentrations and corrected by taking into consideration the area of the compounds detected in the negative controls.
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9

Liver Lipid Extraction and Fatty Acid Profiling

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The liver lipid extraction was obtained according to the previously described method [22 (link)]. Briefly, the extracted fat was saponified (10 min. at 75°C) with a 0.5 M solution of KOH/MetOH and subjected to methylation (10 min. at 75°C) in 14% (v/v) BF3/MetOH (Sigma-Aldrich, St. Louis, MO, USA). Then, the methyl esters of fatty acids were extracted with hexane (Avantor Performance Materials Poland S.A., Gliwice, Poland) and analysed using a gas chromatograph coupled with a mass spectrometer (Shimadzu GCMS QP 5050, Shimadzu, Kyoto, Japan). Separation was achieved using SP-2560 capillary column with a length of 100 m, inner diameter of 0.25 mm, and film thickness of 0.25 μm (Supelco, St. Louis, MO, USA). Helium was the carrier gas.
Identification of methyl esters of long-chain fatty acids was based on the reference standards (FAME Mixture, Larodan Fine Chemicals, Malmo, Sweden) and a library of mass spectra (NIST 1.7). Percentage of methyl esters of fatty acids was calculated from the analytical signal with the formula (Ai/∑iA) · 100 where Ai is the ith signal of the ester and ∑iA is the sum of all identified analytical signal esters [23 (link)].
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10

GC-MS and NMR Analysis of Conversion Degree

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Gas chromatography-mass spectrometry analysis for conversion degree was performed on a Shimadzu GC–MS QP 5050 instrument using a DB-5 (1% methyl phenyl silicone) capillary column purchased from Alltech Associates, USA (30 m, 0.32 mm i.d., 0.25 mm film thickness), and equipped with electronic impact source (75 eV) and a quadrupole analyzer. Helium was used as the carrier gas. Conditions of injections for all cases were as follow: Temperature of injector and detector 250 °C, initial column temperature 150 °C (2 min) then raised up to 250 °C at a 10 °C min-1 rate. 13C-NMR (75 MHz) spectra were performed on a Varian Gemini 300 with tetramethylsilane (TMS) as the internal reference and CDCl3 or CD3OD used as solvents.
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