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9 protocols using gb15002

1

Western Blot Analysis of MYOD Protein

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Total protein was extracted from the cultured CPMs with RIPA lysis buffer (So-larbio, Beijing, China) and PMSF proteinase inhibitors (Solarbio, Beijing, China). A 15 min culture on ice was followed by a 5 min centrifugation at 4 °C at 13,000× g. The supernatant was collected. The protein was separated by SDS-PAGE and transferred to PVDF membranes (Bio-Rad Lab, CA, USA). The membrane was then incubated with primary and secondary antibodies according to the standard process [20 (link)]. The main antibodies used were anti-MYOD (18943-1-AP, Proteintech, 1:1000) and anti-GAPDH (GB15002, Servicebio, 1:2000). The secondary antibodies used were Alexa Fluor® 488-labeled goat anti-mouse IgG HRP (GB25301, Servicebio, 1:5000) and horseradish peroxidase-labeled goat anti-rabbit IgG (GB23303, Servicebio, 1:5000).
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2

Multiprotein expression analysis in tissues

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Proteins from different tissues were extracted with RIPA buffer, then separated on SDS/PAGE and transferred to PVDF membranes, incubated overnight with the corresponding primary antibodies and incubated with HRP-conjugated secondary antibodies, and finally the luminescence signal was detected by ECL. The following antibodies were used: GAPDH (1:2000, GB15002, Servicebio), SOX9 (1:1000, 67439-1-IG, proteintech), RPE65 (1:1000, 17939-1-AP, proteintech), LSM2 (1:1000, 46289, SAB). GAPDH was used for normalization. ImageJ software was used to evaluate and quantify the gray value for 20 samples.
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3

Colonic Protein Extraction and NF-κB Pathway Analysis

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The total protein of colonic tissue was extracted in this study by grinding RIPA lysate. BCA (Thermo) reagent was used to measure colonic histamine levels in mice (Sevier Biotechnology, Wuhan, China). SDS-PAGE with 12% was used to isolate the protein (15 μg), which was then transferred to a PVDF membrane (Millipore, Darmstadt, Germany). The PVDF membrane was then blocked for 2 h at room temperature with 5% skim milk. PVDF membrane and primary antibody NF-κB p65 (Servicebio GB11997 1 : 300), NF-κB p-p65 (Servicebio GB111421 1 : 300), IκB-α (ABCAm EPR20992 1 : 2000), p-IκB-α (ser32 1 : 2000), and GAPDH (Servicebio GB15002 1 : 2000) were stored overnight at 4°C and washed with TBST lotion. The PVDF membrane was then washed in TBS-T washing solution and incubated for 2 h with goat anti-mouse/rabbit secondary antibody (Servicebio GB25301/GB23303 1 : 5000). The trend of protein bands was then detected using an enhanced chemiluminescence solution.
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4

Protein Expression Analysis of AD Tissues

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AD and normal tissues were ground and lysed using a protein lysis buffer (Merck, Germany). Protein concentrations were measured by the BCA assay (Beyotime, China). Briefly, 25 μg of lysate samples was separated on NuPage 4–12% Bis-Tris Gels (Novex, Life Technologies, Carlsbad, CA, United States). After transfer, the blots were incubated in blocking buffer for 1 h at room temperature, followed by incubation with primary antibodies overnight at 4 °C, PBST washing (three times, each for 10 min), secondary antibody for 1 h at room temperature, and PBST washing (three times, each for 10 min). Blots were imaged using the LiCor Odyssey imaging system. Primary antibodies against VWF (1:5000; 11778-1-ap) and PECAM1 (1:500; 28083-1-ap) were purchased from Sanying (Wuhan, China). GAPDH (1:2000, GB15002) and ACTIN (1:2000, GB113225) were purchased from ServiceBio (Wuhan, China). The blot image was then analyzed using ImageJ software, according to the user guidelines.12 (link)
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5

Protein Expression Analysis in Nasal Mucosa

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The nasal mucosa tissues from each group of mice were collected and ground to a powder. Aliquots of HNEpC and LAD2 cells that had been treated were collected. Total protein was extracted by using ice‐cold RIPA lysis buffer and the total protein concentration in each extract was determined by the BCA method. A 50 μg sample of protein from each extract was separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis, and the separated protein bands were transferred onto polyvinylidene fluoride membranes (Merck), which were subsequently blocked. Next, the membranes were incubated overnight at 4°C with primary antibodies of RORα (NBP1‐52813, 1:1000; Novus Biologicals), LC3 (PA01524, 1:1000; Boster), bECLin 1 (PB9076, 1:1000; Boster), p62 (PB0458, 1:2500; Boster), NLRP3 (27458‐1‐AP, 1:2000; Proteintech), Caspase 1 (81482‐1‐RR, 1:5000; Proteintech), ASC (10500‐1‐AP, 1:4000; Proteintech), and GAPDH (GB15002, 1:2000; Servicebio). After washing, the membranes were incubated with a secondary antibody at room temperature for 1.5 h. The immunostained protein bands were detected by enhanced chemiluminescence (ECL; Thermo). The Grayscale values of the target protein bands were analyzed using ImageJ software.
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6

Western Blot Analysis of Cell Markers

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WB was conducted following the methodology described in a previous publication [47 (link)]. The following antibodies were applied: Rabbit Anti-CD9 antibody (1:1000, Abcam, UK, ab92726), Rabbit Anti-CD63 antibody (1:1000, Abcam, UK, ab134045), Rabbit Anti-CD81 antibody (1:1000, Abcam, UK, ab109201), Rabbit Anti-Calnexin antibody (1:1000, Abcam, UK, ab22595), Rabbit Anti-Caspase-9 antibody (1:1000, Abcam, UK, ab22595), Rabbit Anti-Phospho-AKT(Ser473) antibody (1:1000, Absin, abs130002), Rabbit Anti-AKT antibody (1:1000, CST, Beverly, MA, USA, 4685S), Rabbit Anti-BAX antibody (1:8000, Proteintech, 50599-2-Ig), Mouse Anti-Bcl2 antibody (1:2000, Proteintech, 68103-1-Ig), Mouse Anti-GAPDH antibody (1:1000, Servicebio, GB15002). Using Odyssey Infrared Imaging System, the original images of the membranes were recorded and analyzed according to the ECL WB Protocol (Bio-Rad, Milan, Italy).
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7

Protein Expression Analysis of IPEC-J2 Cells

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Total IPEC-J2 cell proteins were extracted using Radioimmunoprecipitation assay (Beyotime). The extracted proteins were quantified using a bicinchoninic acid protein analysis kit (Beyotime). Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (12%) was used to separate equal amounts of proteins, which were then transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). The membranes were incubated with primary antibodies overnight at 4°C.
The primary antibodies comprised those recognizing: MX dynamin like GTPase 1 (MX1) (bsm-51528m, Bioss, Woburn, MA, USA; 1:1,000); Janus kinase 1 (JAK1) (bs-1439R, Bioss; 1:1,000); phosphorylated (p-JAK1) (bs-3238R, Bioss; 1:1,000); signal transducer and activator of transcription 3 (STAT3) (GB11176, Servicebio, Wuhan, China; 1:1,000); p-STAT3 (bs-1658R, Bioss; 1:1,000); and GAPDH (GB15002, Servicebio; 1:2,000). After incubation with horseradish peroxidase-labeled secondary antibodies (GB23303, Servicebio; 1:5,000) or (GB25301, Servicebio; 1:5,000), the immunoreactive protein bands were observed using the enhanced chemiluminescence method (Thermo Fisher Scientific, Waltham, MA, USA).
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8

Protein Expression Analysis in Kidney Cells

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Kidney tissues and HK-2 cells were placed on ice and lysed by adding RIPA lysis solution, PMSF and phosphatase inhibitor (all from Servicebio, Wuhan, China) for 30 min. After the protein concentration was determined by BCA method (Beyotime Biotechnology, Shanghai, China), 20 μg of protein was taken for SDS-PAGE electrophoresis, electrotransferred to PVDF membrane, put into TBST containing 0.1% Tween-20 and 5% skim milk for 1 h. The primary antibodies against these targets, YAP (14074, CST, Danvers, MA, USA), ACSL4 (ET7111-43, Huabio, Hangzhou, China), Collagen Ⅰ (ab34710, Abcam, Cambridge, UK), fibronectin (ab2413, Abcam, Cambridge, UK), α-SMA (GB111364, ServiceBio, Wuhan, China), P53 (ab26, Abcam, Cambridge, UK), GPX4 (ET1706-45, Huabio, Hangzhou, China), SLC7A11 (HA600098, Huabio, Hangzhou, China), GAPDH (GB15002, ServiceBio, Wuhan, China), Histone H3 (GB11102, ServiceBio, Wuhan, China), and incubated at 4 °C overnight. The secondary antibodies containing goat anti-mouse/rabbit IgG polymer (SA00001-1, SA0001-0, proteinTech, Wuhan, China) were added and incubated at 37 °C for 1 h. After washing with TBST, Chemi Doc imaging system (Bio-Rad, Hercules, CA, USA) was used to detect protein blots, and Image J software, version 1.52a (NIH, Bethesda, USA) for semi-quantitative analysis.
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9

Protein Expression Analysis in HBE Cells

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Total protein was obtained by lysing HBE cells with RIPA buffer containing 1% PMSF and the protease inhibitor cocktail, and total protein was determined by the BCA method. The samples were transferred to PVDF membranes. The PVDF membranes were blocked for 2 h with 10% skim milk. The primary antibodies were incubated overnight at 4°C, and the primary antibodies used as follows, GAPDH (1:1000, GB15002, Servicebio, Wuhan, China), β-actin (1:1000, GB15003, Servicebio), NF-kB (1:1000, GB11997, Servicebio),PTGS2 (1:2000,27308-1-AP, Proteintech, Wuhan, China), LaminB (1:2000, GB111802, Servicebio), and Ubiquitin (1: 500, AG3164, Beyotime, Shanghai, China). The membrane was then incubated for 2 h with secondary antibodies. Immunoreactive bands were displayed and visualized with an image capture system (ChemiDoc MP, Bio-Rad).
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