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Xds 3

Manufactured by Optika
Sourced in Italy

The XDS-3 is a laboratory equipment designed for general scientific applications. It features advanced optical components and a compact, durable construction. The core function of the XDS-3 is to provide precise measurements and analysis capabilities for researchers and scientists.

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16 protocols using xds 3

1

Phenotypic analysis of monocyte-derived DCs

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The morphology of monocytes and DCs were observed, and photos were taken using an inverted light microscope (Optika, XDS-3, Italy). To analyze the phenotype of iDCs, mDCs, and CTLA-4-silenced mDCs, these cells were stained with specific surface markers including HLA-DR (anti-HLA-DR-APC), CD40 (anti-CD40-CF-blue), CD86 (anti-CD86- PerCP-cy5.5), and CD11c (anti-CD11c-FITC). The MACSQuant cytometer (Miltenyi Biotec, Auburn, CA, USA) was used to evaluate the cells, and the obtained data were analyzed using FlowJo software v10.5.3.
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2

Evaluating Cell Mobility with HMGA2 and Bach-1

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To evaluate the effect of HMGA2 and Bach-1 on the cellular mobility of MCF-7 and MDA-MB-468 cells, 5x10 5 cells transfected with specific siRNAs were seeded in 24-well cell culture plates. After the cells were attached to the bottom of the wells, scratches were applied to each well using sterile yellow sampler tips. After that, images were taken of the wells by an inverted light microscope (Optika, XDS-3, Italy) at 0 and 48 h after transfection. Mobility of the cells from the edge of the gap area was determined in siRNAs transfected group compared to the negative controls (NC).
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3

Cellular Uptake and Cytotoxicity of IMD

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The fluorescence imaging and Perls’ staining (neutral red method) were adopted to observe the cellular uptake of the IMD. First, 4T1 cells (2 × 105 cells/well) were seeded in a confocal dish or 6-well plates and cultured overnight in RPMI-1640 medium at 37°C with 5% CO2. Then, 4T1 cells were incubated with PBS, IMD, or IMD with magnetic targeting (containing DOX 20 μg/ml) at 37°C (5% CO2) for 6 h. Alternatively, IMD at different concentrations ([IO]: 0, 0.2, 0.4 mg/ml) were added to cells and incubated for 6 h. Finally, the cells were stained with DAPI or Prussian blue/neutral red. An inverted microscope (XDS-3, Optika, Italy) or confocal microscope (TCS SP8, Leica, Germany) were used to obtain the data.
The cytotoxicity of DOX, IM, and IMD was investigated using an MTT assay. Briefly, 4T1 cells were transferred to 96-well plates with a density of 8 × 103 cells/well and incubated overnight. Afterwards, DOX, IM, or IMD (100 μL) of different concentrations were added to each well. After incubation for 12 h or 24 h, the drug-containing medium was discarded, replaced with RPMI-1640 containing MTT (10 μL; 5 mg/ml), and further incubated for 4 h. Finally, the media was removed, and DMSO (100 μL) was added to each well. The absorbance was measured under a micro reader (Spark, Tecan, Switzerland) at 570 nm.
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4

Inhibiting GC Cell Migration Through miRNA

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A wound healing assay was performed to realize the effect of miR-145-5p and anti-miR-21-5p combination in inhibiting GC cell migration. Then, KATOIII cells were transfected with miR-145-5p and anti-miR-21-5p, at a density of 5 × 105 cells per well, were cultivated into 24‐well culture plates. After incubation for 24 hours to reach 70% confluence, the cell monolayers were scratched with yellow pipette tips to form a wound area in the center of each well. Afterwards, the mobility of the cells in the wound area was followed 0, 24, 48 and 72 hours after the formation of the scratch and photographed by means of an inverted light microscope (Optika, XDS-3, Italy).
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5

Angiogenic Potential of Compounds

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Matrigel (Corning,
Cat# 356237) was gently added into 96-well plates at a volume of 70
μL/well and allowed to gel at 37 °C for 30 min. A mixture
of HUVECs (25 × 103) and DMSO, 4 (0.5,
1, 2 μM), or 5 (25 μM) was then dispensed
over the gels and incubated for 16 h. Next, the wells were filled
with PBS and covered with a coverslip to diminish the meniscus effect,
allowing proper examination of the endothelial tube networks under
a light microscope (Optika XDS-3, Italy). Bright-field images of 4x
magnification were captured and then processed using Fiji ImageJ software.
For the assessment of endothelial tube disruption, HUVECs at a density
of 25 × 103 cells/well were seeded onto Matrigel and
incubated for 4 h to align into tubes. The cells were then treated
with DMSO, 4, or 5 for 16 h prior to the
microscopic examination as mentioned above.
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6

Evaluating CBD's Impact on SGC-7901 Cell Colony Formation

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The SGC-7901 cells at the logarithmic growth phase were digested with 0.25% trypsin + 0.02% EDTA and centrifuged at 800× g for 3 min to collect the cells. After counting, the cell concentration was adjusted, and 2 mL of the cell suspension containing 300 cells was seeded into each well of a six-well plate. After 48 h of culture, the CBD culture medium containing 10, 20, and 40 µg/mL was added, and after culturing for another 24 h, the fresh medium was replaced, and cell growth was monitored each day. Cells were cultured for 14 days and then dyed. The medium was discarded, and the cells were washed twice with PBS. The cells were fixed with a 4% cell fixing solution for 15 min, and then the cell fixing solution was discarded. The cells were then stained with gentian violet for 10 min and then slowly rinsed with running water. The plates were then observed for the formation of colonies. Images were captured using a light microscope (XDS-3, OPTIKA, Ponteranica, BG, Italy). Clones containing more than 50 cells were counted and used in calculating the rate of colony formation.
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7

Evaluating miR-330's Impact on Cell Mobility

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To evaluate the effect of miR-330 on the cellular mobility of HCT116 and SW480 cells, 5x10 5 cells were seeded. After cells filled the entire bottom of wells, a scratch was generated to each well via a yellow tip. The number of migrated cells into the scratched area evaluated after 48 hours by an inverted light microscope (Optika, XDS-3, Bergamo, Italy).
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8

Fungal Isolation and Identification for Biopesticides

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Identification of isolated fungal strains was based on cultural and morphological features and was done by observing the growth pattern and colony formation of the fungal cultures. Slides were prepared from each isolate to identify its morpho-taxonomic characters using an inverted trinocular microscope (XDS-3, Optika SRL, Italy) by inspecting conidial structure and morphology according to the available literature and identification keys (Mongkolsamrit et al. 2020) (link). Two cultures were identified as EPF: Beauveria bassiana (Balsam) Vuillemin and Metarhizium anisopliae (Metschn.) Sorokin (Ascomycota, Hypocreales: Clavicipitaceae) and were selected for further determination of their entomo-virulence against the model insect pests i.e., M. persicae and S. frugiperda.
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9

Evaluating Stemness and Viability of A172 Cells

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The viability and stemness of the A172 cells were investigated using the colony formation assay. After seeding 5×103 transfected and non-transfected cells into a six‐well plate and incubating for 14 days and treatment, the cells were stained using crystal violet. The inverted microscope (Optika, XDS‐3, Italy) was used to obtain microscopic pictures of the colonies.
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10

Evaluating U87MG Cell Stemness

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The stemness of the U87MG cells was investigated using the colony formation assay. Crystal violet was used to stain the cells after they had been incubated for 14 days with 3 × 105 transfected and non-transfected cells in a six-well plate. The pictures were taken using an inverted microscope (Optika, XDS-3, Italy).
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