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Dionex 3000 hplc system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Dionex 3000 HPLC system is a high-performance liquid chromatography (HPLC) instrument designed for the separation, identification, and quantification of chemical compounds. It features a modular design, allowing for customization to meet specific laboratory requirements.

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5 protocols using dionex 3000 hplc system

1

Quantifying Gemcitabine Uptake in Pancreatic Cancer Cells

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MIA PaCa-2 and AsPC-1 cells were harvested after the treatment with gemcitabine (200 μM for 18 h and 400 μM for 18 h), respectively. Cell supernatant was removed after centrifugation and 200 μL methanol was used to re-dissolve the dried cell lysate, and the internal standard (N15-gemcitabine) was added with 200 nM final concentration. A Dionex 3000 HPLC system (Thermo Scientific) was used in combination with an LTQ Orbitrap XL mass spectrometer (Thermo Scientific) for cell lysate analysis. The total quantity (mole) of gemcitabine in the lysate was obtained based on the relative peak areas of gemcitabine and N15-gemcitabine, and the average quantity of gemcitabine in each cell (i.e., mole/cell) was calculated using the total drug quantity in the lysate divided by the cell number used for lysate preparation.
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2

LC-MS Analysis of Peptide Pools

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For LC-MS analysis, the peptide pools in the 96 well plates were dissolved in 0.1% formic acid in water to a concentration of 100 fmol/μl per peptide (residual DMSO concentration of ~1%). An estimated amount of 200 fmol of every peptide in a pool was subjected to liquid chromatography using a Dionex 3000 HPLC system (Thermo Fisher Scientific) using in-house packed C18 columns. The setup consisted of a 75 μm × 2 cm trap column packed with 5 μm particles of Reprosil Pur ODS-3 (Dr. Maisch GmbH) and a 75 μm × 40 cm analytical column, packed with 3 μm particles of C18 Reprosil Gold 120 (Dr. Maisch GmbH). Peptides were loaded onto the trap column using 0.1% FA in water. Separation of the peptides was performed by using a linear gradient from 4% to 35% ACN with 5% DMSO, 0.1% formic acid in water over 50 min followed by a washing step (60 min total method length) at a flow rate of 300 nL/min and a column temperature of 50 °C.
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3

HPLC Analysis of Chemical Compound CSP7

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Samples were chemically analyzed with a Dionex 3000 HPLC system (Thermo Fisher Scientific, Fair Lawn, NJ) with a wavelength of 220 nm. CSP7 was eluted by Phenomenex® Luna 5pm Cl8(2) 100 A, 150 mm x 4.6 mm (Phenomenex®, Torrace, CA) column at a flow rate of 1.0 mL/min. Two mobile phases were A (0.1% trifluoroacetic acid in water) and B (0.09% trifluoroacetic acid in a mixture of 20:80, water and acetonitrile). The HPLC gradient consisted of 25–35% mobile phase B in 20 min and was run at ambient temperature. 20 pL of each sample was injected onto the column and chromatograms were acquired at the detection wavelength of 220 nm. Standard curve of the CSP7 trifluoroacetate (concentrations of 0.1–1 mg/mL) were prepared. Duplicate determinations were made for each sample. LC/MS was used for to confirm identity.
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4

HPLC Analysis of Naphthoquinone Compounds

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Before analytical procedures, dried extracts from biomass, xerogels, and culture medium were mixed with methanol (HPLC-grade) (Merck, Poznań, Poland). Redissolved samples of extracts were chromatographically analyzed by a reversed-phase HPLC technique supported by the DIONEX 3000 HPLC system (Thermo Scientific, Waltham, MA, USA) equipped with an EC Nucleosil 120-7 ODS packed column (250 × 4.6 mm) filled by 7 μm particles with 120 Å pores (Macherey-Nagel, Allentown, PA, USA). A UVD 340S diode-array detector (Thermo Scientific, Waltham, MA, USA) was applied for qualitative and quantitative detection of chemical compounds. The chromatographic separation was performed using a gradient elution of acetonitrile (60–80%) and 0.04 M orthophosphoric acid (40–20%) at a flow rate of 1.5 mL min−1. Eluent absorbance was measured at four wavelengths: 215, 237, 350, and 436 nm. The concentrations of naphthoquinones, i.e., deoxyshikonin and rinderol, in extracts were quantitatively determined by the analysis of specified peaks at 215 nm (deoxyshikonin) and 237 nm (rinderol) wavelengths on chromatograms following the standard external method. Referenced deoxyshikonin and rinderol standards were used for qualitative identification of naphthoquinones peaks and calibration of the curve for quantitative analysis.
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5

HPLC Analysis of Lipophilic Compounds

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The HPLC analysis was performed by Dionex 3000 HPLC system (Thermo Fisher Scientific Inc., Waltham, MA, USA). Chromatograms were detected at 450 nm wavelength; data acquisition was performed by Chromeleon 7.20 software. The separation was carried out on an endcapped C30 column (250 × 4.6 mm i.d.; YMC C30, 3 µm, YMC Europe GmbH, Dinslaken, Germany). Eluents: (A) MeOH: MTBE (methyl-t-butylether): H2O = 81:15:4 v/v%; (B) MeOH: MTBE: H2O = 6:90:4 v/v%. The chromatography was performed in a linear gradient from 100% A eluent to 50% B mixture in 45 min, with 1.00 mL/min flow rate, at 22 °C.
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