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Equilibration buffer 2

Manufactured by Bio-Rad

Equilibration buffer II is a lab equipment product designed to maintain the appropriate pH and ionic conditions for various biomolecular applications. It serves as a buffer solution to create a stable environment for the equilibration and processing of samples.

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2 protocols using equilibration buffer 2

1

Two-Dimensional Gel Electrophoresis of AEs

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A 100-µg portion of the AEs was prepared with a ReadyPrep 2-D Cleanup kit (Bio-Rad
Laboratories) and used for two-dimensional gel electrophoresis (2-DE). First-dimensional
isoelectric focusing (IEF) and second dimensional SDS-PAGE were performed in accordance
with the manufacturer’s instructions (Bio-Rad Laboratories). Samples were applied to
rehydrated immobilized pH gradient (IPG) strips (7-cm long, pH range 3–10, Japan Bio-Rad
Laboratories) in a focusing tray. Then, the focusing IPG strips were run (Step 1: 250 V,
30 min; Step 2: 4,000 V, 60 min; Step 3: 4,000 V, 10,000 V-h) at 20°C under mineral oil.
After focusing, the strips were equilibrated, first in equilibration buffer I (Bio-Rad
Laboratories) for 20 min, and then in equilibration buffer II (Bio-Rad Laboratories) for
10 min. The strips were placed on top of the second-dimension gel (Bio-Rad Laboratories),
and electrophoresis was performed at 200 V for 30 min. The gel was visualized by staining
with CBB, and the other gel was transferred to NCS for Western blotting as described
above. Sera of individuals Nos. 93 and 195 working in the plant showing the highest OD in
IgG and IgA ELISA were used for detecting the recognized antigens, respectively.
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2

2D Gel Electrophoresis Proteome Analysis

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Samples (200 µg of protein content) were precipitated with ice-cold acetone and pelleted by centrifugation (16,000 × g for 10 min). After protein reconstitution in Rehydration/ Sample buffer (163-2106, Bio-Rad), they were applied to 7 cm linear ReadyStrip IPG strips with pH 3-10 (163-2000, Bio-Rad) and let to rehydrate overnight. Isoelectric focusing (IEF) was performed using Protean IEF system (Bio-Rad) in three-step protocol (250 V for 20 min, 4000 V for 2 hours and 4000 V until the total voltage reached 10,000 Vh). Prior to the second dimension separation, the strips were equilibrated in Equilibration Buffer I (163-2107, Bio-Rad) for 15 min and in Equilibration Buffer II (163-2108, Bio-Rad) with added 0.03 g/ml iodoacetamide for 15 min. Following equilibration, the IPG strips were placed on 12% polyacrylamide gels and covered with overlay agarose (163-2111, Bio-Rad). SDS-PAGE ran for 20 min at 15 mA and at 25 mA until the bromophenol blue dye reached the bottom of the gel using a Bio-rad mini electrophoresis system in tricine electrophoresis buffer. Gels were stained using Bio-Safe Coomassie G-250 stain (161-0786, Bio-Rad), scanned by GS-800 Calibrated Densitometer (Bio-Rad) and analysed using PDQuest 8 software (Bio-Rad).
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