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7 protocols using ab214428

1

Immunofluorescence Staining of Cathepsin and Iron Markers

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The injured CAs underwent a series of processes, including excision, fixation, and embedding in paraffin. Then, the CAs were cut into 4 μm thick sections and analyzed through IF staining. Homoplastically, the treated HUVECs were fixed in 4% paraformaldehyde. Next, as previously described [20 (link)], the sections and HUVECs were incubated with primary antibodies against cathepsin B (1 : 100, ab214428, Abcam), cathepsin D (1 : 200, #2284 s, Cell Signaling Technology), ferritin (1 : 50, ab75973, Abcam), and TfR (1 : 50, ab269513, Abcam) at 4°C overnight. After washing three times on the following day, the samples were then incubated with Alexa Fluor 488-conjugated donkey anti-rabbit IgG (H+L) (1 : 300, A32790, Invitrogen, Carlsbad, CA, USA), Alexa Fluor 555-conjugated donkey anti-rabbit IgG (H+L) (1 : 300, A32794, Invitrogen), Alexa Fluor 488-conjugated goat anti-mouse IgG (1 : 300, A-11001, Invitrogen), and Alexa Fluor 555-conjugated goat anti-mouse (1 : 300, A-21424, Invitrogen) secondary antibodies at 37°C for 1 h. Next, 4,6-diamino-2-phenylindole (SouthernBiotech, Birmingham, AL, USA) was added to each section for coverslipping. Finally, the sections were observed under a fluorescence microscope (OLYMPUS BX50/BX-FLA/DP70; Olympus Co., Tokyo, Japan), and ImageJ software was used to quantify the fluorescence intensity.
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2

Protein Quantification and Analysis in Cartilage

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The protein levels in cartilage tissues and cells were determined by referring to methods in previous literature [19 (link)]. Briefly, the protein lysates of brain tissues or cell samples were prepared with a radio-immunoprecipitation assay lysis buffer (P1003B, Beyotime, Shanghai, China) and 1% phenylmethylsulfonyl fluoride. Bicinchoninic acid (BCA) kits (Beyotime) were adopted for protein quantification. Subsequently, the proteins (15–50 μg) were separated with 4–20% sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes with a pore size of 0.45 μm or 0.22 μm. Next, the membranes were blocked with 5% skim milk for 1 h and cultured with the primary antibodies gasdermin D (GSDMD)-N (dilution ratio of 1:1000, DF13758, Affinity Biosciences, USA), CTSB (dilution ratio of 1:1000, ab214428, Abcam), NLRP3 (dilution ratio of 1:1000, ab263899, Abcam), and GAPDH (dilution ratio of 1:10,000, ab181602, Abcam) at 4°C overnight. Afterward, the membranes were cultured with the secondary antibody anti-rabbit IgG (dilution ratio of 1:1000, ab205718, Abcam) for 1 h, and then visualized using an enhanced chemiluminescence reagent (#34,080, Thermo Fisher Scientific Inc., Waltham, MA, USA). The protein blotting was analyzed using the ImageQuant LAS 4000 (General Electric Company, Schenectady, NY, USA).
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3

Western Blot Analysis of Lysosomal Proteins

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Proteins were resolved by Mini-Protean TGX stain-free gels 4–20% (BioRad 4568093) and transferred to TransBlot Turbo mini-size PVDF membrane (BioRad). Membranes were fixed with 0.4% paraformaldehyde (PFA) then rinsed three times with ultrapure water using the Milli-Q EQ 7000 Ultrapure Water Purification System. The membrane was blocked in 5% powdered milk in 1X tris-buffered saline with Tween-20 (TBS-T), and primary antibodies and secondary antibodies were dissolved in this same buffer. Information on the antibodies used can be found in Table 1. Primary antibodies used were LAMP1 (rabbit, Abcam ab24170) diluted 1:1000, PGRN (sheep, R&D AF2557) diluted 1:400 and Cathepsin B (CTS B)(rabbit, Abcam ab214428) diluted 1:1000. Secondary antibodies Goat anti Rabbit HRP (Jackson Immunoresearch 111-035-144) and Donkey anti-Sheep HRP (Invitrogen A16041) were diluted 1:2000. The membrane was developed using SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo scientific 34577) and SuperSignal West Femto Maximum Sensitivity Substrate (Thermo scientific 34096) and visualized on the Li-cor Odyssey FX system.
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4

Co-Immunoprecipitation Assay for Protein-Protein Interactions

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Co-IP assay were performed by referring to methods in previous literature [24 (link)] to confirm the protein-protein binding. Following the addition of protease inhibitor mixture and phosphatase inhibitor mixture (Santa Cruz Biotechnology, Texas, USA), the mouse knee cartilage tissue lysate was produced. Next, the total protein of the lysate was determined using a Genesys 10 UV-Vis spectrophotometer (Thermo Fisher Scientific) and Pierce BCA protein analysis kits (Thermo Science, Waltham, MA, USA). After diluting the sample with lysate to the same concentration, 40 μL protein was collected and used as the Input. The mouse cartilage tissue protein was then treated with the Pierce Co-IP kit (Thermo Fisher Scientific). The experiment was performed in accordance with the manufacturer’s instructions as follows: 10 μL of monoclonal CTSB (1:1000, ab214428, Abcam) was co-incubated with the resin and covalently coupled, and the control group was added with 10 μL anti-IgG (dilution ratio of 1:1000, ab205718, Abcam). The antibody-coupled resin was cultured with 200 mL mouse cartilage tissue protein lysate at 4°C overnight, and the resin was rinsed. Afterward, the protein complex bound to the antibody was eluted, followed by Western blot analysis.
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5

Hippocampal Protein Expression Analysis

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Hippocampal RIPA lysates were used for TFEB (1:2000; A17106C, BioLegend), Cathepsin B (1:100; ab214428, Abcam), Cathepsin D (1:100; ab6313, Abcam), LC3b (1:1000; ABC232, EMD Millipore), GAPDH (1:1000; 60004-1-Ig, Proteintech) western blots. 10ug total protein per sample was loaded in 4-20% precast polyacrylamide gels (BioRad) under denaturing conditions and subjected to SDS-PAGE. After separation, proteins were transferred onto nitrocellulose membranes (Trans-Blot Turbo, BioRad) and blocked in 5% milk or 5% albumin in TRIS buffered saline with 0.1% triton-x 100 for one hour at room temperature. Blots were incubated in primary antibodies as listed above at 4°C with gentle agitation. Blots were then washed and incubated in corresponding HRP-conjugated secondary antibodies for one hour at room temperature and visualized using enhanced chemiluminescence technique (Pierce).
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6

Immunofluorescence Analysis of Chondrocytes

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Chondrocytes were seeded on glass-bottom dishes grown to 70%–80 % confluence. After the designated treatment, the cells were washed using PBS three times before fixed by 4 % paraformaldehyde and then blocked with goat serum before individually incubated with primary antibodies. The primary antibodies used were: anti-LAMP2 (ab18528, Abcam; diluted at 1:200), anti-Galectin-3 (60207-1-Ig, Proteintech; diluted at 1:400) and anti-cathepsin B (ab214428, Abcam; diluted at 1:250). The sections were incubated with secondary antibody (US Everbright Inc., Suzhou, China). After incubation, the sections were washed with phosphate-buffered saline and the nuclei were counterstained with DAPI (Invitrogen). The immunofluorescence images were taken with the confocal microscope (FV1000, Olympus, Tokyo, Japan). Relative fluorescence intensity and fluorescence co-localization analysis were analyzed with Image J.
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7

Immunofluorescence Analysis of Cathepsin, Ferritin and TfR

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The injured CA was excised, xed, embedded in para n and cut into 4-µm sections and examined by IF staining. Homoplastically, the disposed HUVECs were xed by 4% paraformaldehyde. As previously described [20] , The sections and HUVECs were incubated with primary antibodies to Cathepsin B (1:100, ab214428, abcam), Cathepsin D (1:200, #2284s, Cell Signaling Technology), Ferritin (1:50, ab75973, abcam) and TfR (1:50, ab269513, abcam) at 4°C overnight. Then, it was incubated with the Donkey anti-
Rabbit IgG (H+L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 (1:300, A32790, Invitrogen) and Alexa Fluor 555 (1:300, A32794, Invitrogen) and Goat anti-Mouse IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 (1:300, A-11001, Invitrogen) and Alexa Fluor 555 (1:300, A-21424, Invitrogen) at 37°C for 1 hour after washed 3 times on the following day. Next, the sections were added into 4,6-diamino-2-phenylindole (SouthernBiotech, Birmingham, AL, USA) for coverslipping. In the end, the sections were observed under a uorescence microscopeOLYMPUS BX50/BX-FLA/DP70; Olympus Co., Japan, and ImageJ software was used for quantizing the uorescence intensity.
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