The largest database of trusted experimental protocols

Hcs studio 2

Manufactured by Thermo Fisher Scientific

The HCS Studio™ 2.0 software is a comprehensive platform for high-content screening (HCS) analysis. It provides tools for image acquisition, analysis, and data management to support cellular imaging and phenotypic profiling studies.

Automatically generated - may contain errors

6 protocols using hcs studio 2

1

High-Content Screening of Cellular Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Slides were fixed with 4% PFA for 10 min at room temperature (RT) and washed with PBS. Slides were imaged using the CellInsight CX5 High Content Screening (HCS) Platform (Thermo Fisher Scientific). The system was programmed to visit each spot on the array, perform autofocus, and acquire DAPI and FITC (GFP). Cell counts and stain intensities were measured using Thermo Fisher Scientific HCS Studio 2.0 Software using the built-in object identification and cell intensity algorithms.
+ Open protocol
+ Expand
2

Sophorolipids Modulate Mitochondrial Membrane Potential

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mitochondrial membrane potential (MMP) was investigated using Mito Tracker Red (Invitrogen), a mitochondrial potential sensor [14 (link)]. Briefly, HeLa 1x105 ml-1 cells treated with sophorolipids SLCA B (16.32 μg ml-1) and SLCA C (14.14 μg ml-1) for 2, 24, 48 and 72 h were stained with 0.1 μmol l-1 Mito Tracker Red and incubated at 37°C for 15 mins. After incubation, the cells were washed, fixed and then stained with DAPI (1 μM ml-1). Further, LSCM was used to acquire images of the stained cells by employing HCS using Mito Tracker Red (a red-fluorescent dye) at excitation wavelength 525 nm and emission wavelength 590 nm. Analysis was carried out using Thermo Scientific HCS studio 2.0 software.
+ Open protocol
+ Expand
3

Quantifying Apoptosis via Annexin V-FITC

Check if the same lab product or an alternative is used in the 5 most similar protocols
Apoptosis was evaluated by the binding of annexin V-FITC to phosphotidylserine, that gets externalized to the outer leaflet of the plasma membrane [12 ], followed by high content screening. Post-incubation, the cells were harvested and subsequently treated with annexin V-binding buffer comprising of annexin V-FITC (3 μg ml-1), DAPI (1 μM) and propidium iodide (10 μg ml-1) [13 ]. The number of cells undergoing apoptosis were examined using LSCM (20X magnification, Olympus FV1000) and Thermo Scientific HCS studio 2.0 software was used for three dimensional multichannel-image processing. The apoptotic ratio was calculated as: % apoptotic ratio = [(the number of cells positive for Annexin V-FITC)/ (the number of cells positive for DAPI)] ×100
+ Open protocol
+ Expand
4

Multiparametric Cytotoxicity Profiling of Nano-CeO2

Check if the same lab product or an alternative is used in the 5 most similar protocols
A multiparametric cytotoxicity assay was performed using a cellomics high content screening (HCS) reagent HitKit as per the manufacturer’s instructions (Thermo Fisher Scientific Inc., Waltham, MA, USA). This kit measures cell count, MMP, ROS and GSH.
The HepG2 cells were placed on 96 well plates in the DMEM. On the second day, the cells were treated overnight with the 6.25, 12.5, 25, 50, 100 μg/mL nano-CeO2 and vehicle (0.1 % DMSO), respectively. After 24 h of incubation (37 °C, 5%CO2, 100% humidity), the media were removed and the cells were stained by fluorescent probes in the same culturing medium. The fluorescent probes were: Hoechst 33342 for cell count, tetramethylrhodamine methyl ester (TMRE) for mitochondrial membrane potential, 2′,7′-dichlorofluorescein (DCFH-DA) for ROS, and finally monochlorobimane (mBCL) for glutathione. Automated live-cell multispectral image acquisition was performed on a High Content Analysis (HCA) Reader (ArrayScan XTI, Thermo Fisher Scientific Inc.). The fluorescence images were captured according to the excitation and emission wavelengths of each probe: (1) 350 and 461 nm for Hoechst 33342 on channel 1; (2) 584 and 606 nm for TMRE on channel 4; (3) 504 and 529 nm for DCFH-DA on channel 3; (4) 380 and 461 nm for mBCL on channel 2. Image analysis was performed using HCS Studio™ 2.0 software (Thermo Fisher Scientific Inc.)
+ Open protocol
+ Expand
5

Calcium Release Dynamics by Sophorolipids

Check if the same lab product or an alternative is used in the 5 most similar protocols
The effect of SLCAs on [Ca2+]i release was examined quantitatively and qualitatively using Fluo 4-acetoxymethyl ester (Fluo-4 AM) dye as described previously [15 (link)]. Briefly, HeLa 1x105 ml-1 cells were treated with sophorolipids for 4, 8 and 12 h. Following incubation, the cells were washed with PBS and loaded with Fluo-4 AM (4 μM). Nuclei were stained with DAPI. An alteration in released calcium level was detected using LSCM by measuring the green fluorescence (excitation 490 nm, emission 530 nm). Data analysis was carried out using Thermo Scientific HCS studio 2.0 software.
+ Open protocol
+ Expand
6

Sophorolipid Cell Cycle Distribution

Check if the same lab product or an alternative is used in the 5 most similar protocols
The distribution of sophorolipid treated cells in cell cycle was assayed as described earlier [11 ] by DAPI staining at different time intervals. Briefly, HeLa cells were treated with sophorolipids SLCA B (16.32 μg ml-1) and SLCA C (14.14 μg ml-1) for time interval of 6, 12, 18 and 24 h. Following incubation, cells were stained with DAPI and the DNA content was measured using a laser-scanning confocal microscope (LSCM). Data was analysed using Thermo Scientific HCS studio 2.0 software to calculate the percentages of cells in G1, S and G2/M phase.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!