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4 protocols using nonfat dry milk

1

Western Blot Protein Analysis Protocol

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The cell lysate was prepared with SDS-lysis buffer (Beyotime, Shanghai, China). Total protein concentration was measured by Nano-100 Micro-Spectrophotometer. Protein was then separated by 10% SDS-polyacrylamide microgel and transferred to 0.45-μm polyvinylidene difluoride membranes (Invitrogen). The PVDF membranes were then blocked in Tris-buffered saline containing 5% nonfat dry milk (w/v) (Sangon Biotech) in Tween-20 (TBST) for 1 h at room temperature. After that, the membranes were incubated with the indicated primary antibodies overnight. Then, they were incubated with a secondary antibody conjugated with HRP. We used Tanton™ Chemistar High-sig ECL Western Blotting Substrate (ECL) to display the signal. Full blots of images cropped for presentation are presented in Supplementary Material.
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2

Western Blot Analysis of SjIAP and SjTeg-20

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Lysates were prepared from parasites treated with SjIAP/SjTeg-20 siRNA or control siRNA, and the proteins were quantified by Bradford method. Equal amounts of protein lysates from siRNA-treated worm groups and control groups were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE; 10% resolving gel) and then electrotransferred onto polyvinylidene difluoride membranes (BioRad, USA). Non-specific protein–protein interactions were blocked using 5% non-fat dry milk (Sangon Biotech, China) in phosphate buffered saline (PBS; pH = 7.4) containing 0.1% Tween 20 (PBST; Sigma-Aldrich). The membrane was incubated for 1 h at room temperature with primary antibodies/sera against SjIAP and SjTeg-20 (1:2000 dilutions)(Shanghai Veterinary Research Institute, China) and anti-alpha tubulin (CoWin Biosciences, China) diluted 1:2000 in blocking buffer, and washed five times for 5 min each in 0.1% PBST. The membrane was then incubated with the secondary antibody horseradish peroxidase-conjugated goat anti-rabbit/mouse immunoglobulin (Ig)G (CoWin Biosciences, China), diluted to 1:5000 in PBS, for 1 h. The membrane was developed using Immobilon Western Kit according to the manufacturer's instructions (Millipore).
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3

Western Blot Analysis of Apoptosis Markers

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Protein extracts were separated on 8–15% polyacrylamide gels and then transferred onto polyvinylidene difluoride (PVDF) membranes (MilliporeSigma, Burlington, MA, USA). After blocking nonspecific binding with 5% nonfat dry milk (Sangon Biotech Shanghai Co., Ltd.) membranes were probed with primary antibodies overnight at 4°C and incubated with ppropriate HRP-labeled secondary antibodies at room temperature for 1 h. Membranes were then visualized with an enhanced chemiluminescence luminescence reagent (Meilunbio). The intensities of the bands were determined by ImageJ Launcher broken symmetry software program (NIH, Bethesda, MD, USA). Following antibodies were used: rabbit anti-mouse cleaved caspase-8 (#8592; Cell Signaling Technology), rabbit anti caspase-8 (AC056; Beyotime), Phospho-RSK2 (Ser227) Rabbit mAb (#3556S; Cell Signaling Technology), PDK1 (D37A7) Rabbit mAb (#5662S; Cell Signaling Technology), Caspase-3 (D3R6Y) Rabbit mAb (#14220S; Cell Signaling Technology), Caspase-1 (D7F10) Rabbit mAb (#3866S; Cell Signaling Technology), Anti-MLKL (phospho S345) (ab196436; Abcam), Anti-MLKL (phospho S358) (ab187091; Abcam), Anti-pro Caspase-1 + p10 + p12 (ab179515; Abcam), Anti-GSDMD antibody (ab209845; Abcam), Anti-GSDMD antibody (ab225867; Abcam), Anti-cleaved N-terminal GSDMD (ab215203; Abcam), anti-beta-actin (bs-0061 R; Bioss).
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4

Western Blot Analysis of Inflammatory Pathways

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Thirty milligrams of the ceca was cut into pieces and lysed in 1 ml of RIPA buffer containing protease inhibitors and phosphatase inhibitors (Beyotime Biotechnology). Samples were homogenized on ice, centrifuged for supernatant at 12,000 rpm for 30 min at 4°C, and heated to 100°C for 5 min. Protein extracts resuspended in sample loading buffer were separated by electrophoresis through 12–15% polyacrylamide gels. Following electrophoretic transfer of proteins onto polyvinylidene difluoride (PVDF) membranes (Millipore), non-specific binding was blocked by incubation with 5% non-fat dry milk (Sangon Biotech Shanghai Co., Ltd.), and then membranes were incubated with primary antibodies anti-phospho-ERK1/2 and anti-phospho-JNK1/2 (1:1,000 dilution, Cell Signaling Technology); anti-NLRP3, anti-NLRC4, anti-Caspase-1, anti-Caspase-11, anti-GSDMD, and anti-histone H3 (1:1,000 dilution, abcam); anti-GAPDH (1:1,000 dilution, Boster); and anti-Tubulin (1:1,000, Beyotime) overnight at 4°C. Membranes were then washed and incubated with the horseradish peroxidase (HRP)-labeled goat anti-rabbit IgG (1:3,000 dilution, Beyotime) for 1 h at room temperature. Proteins were visualized using enhanced chemiluminescence (ECL) reagent (Meilunbio). The grayscale values of the bands were determined by ImageJ launcher broken symmetry software program (National Institutes of Health, Bethesda, MD, USA).
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