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9 protocols using ab151796

1

Investigating Shh/Gli-1 Signaling in Apoptosis

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The antibodies used for Western blot included anti-p-Akt (9271S, Cell Signaling Technology, USA), anti-Akt (9272S, Cell Signaling Technology, USA), anti-Shh (20697-1-AP, Proteintech Group, USA), anti-Gli-1 (ab151796, Abcam, USA), anti-Patch (ab53715, Abcam, USA), anti-NF-κB (10745-1-AP, Proteintech Group, USA), anti-p-NF-κB (3033S, Cell Signaling Technology, USA), anti-p-CREB (9198S, Cell Signaling Technology, USA), anti-CREB (9197S, Cell Signaling Technology, USA), anti-BDNF (17465-1-AP, Proteintech Group, USA), anti-neuroligin (ab186279, Abcam, USA), anti-neurexin (ab222806, Abcam, USA), and anti-β-actin (TA-09, Zhongshan Golden Bridge Biotechnology, China). The antibody for immunofluorescence was anti-Gli-1 (ab151796, Abcam, USA). PUR and cyclopamine (Cyc, a smoothened inhibitor) were purchased from Selleck Chemicals (Houston, TX, USA). Thread embolus was purchased from Guangzhou Jialing Biotechnology Co., Ltd. (L3800, Guangzhou, China). Annexin V-FITC/PI Double Labeling Apoptosis Detection Kit was purchased from BestBio Science (Shanghai, China). Terminal deoxynucleotidyl transferase-mediated dUTP-biotin nick end labeling (TUNEL) kit was purchased from KeyGen Biotech (KGA7073, Beyotime, Shanghai, China).
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2

Western Blot Analysis of Cellular Proteins

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The analysis was performed according to standard procedures described previously15 (link). Antibodies against p21 (1:1000, #2947, CST), Cleaved PARP (1:1000, # ab32064, Abcam), Bcl-2 (1:1000, #ab32124, Abcam), Bcl-xL (1:500, #D120306, Sangon Biotech, Shanghai, China), Gli1 (1:1000, #ab151796, Abcam), NICD1 (1:500, #07-1232, Millipore, Billerica, MA, USA), β-catenin (1:1000, #8480, CST), Lamin B1 (1:2000, #66095-1-Ig, Proteintech), phospho-Akt (Ser473) (1:1000, #4060, CST), Akt (1:1000, #4691, CST), phospho-GSK3α/β (Ser21/9) (1:1000, #8566, CST), GSK3α/β (1:1000, #5676, CST), GAPDH (1:1000, #5174, CST), β-actin (1:1000, #5125, CST) were used.
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3

Western Blot Analysis of Hedgehog Pathway Proteins

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Protein was detected using the bicinchoninic acid kit (cat. no. 20201ES76; Yeason Biotechnology Co. Ltd.); samples were diluted in deionized water to achieve a loading quantity of 30 µg protein per lane. Proteins were separated via SDS-PAGE (12% gel) transferred onto a nitrocellulose membrane, which was sealed using 5% skim milk powder at 4°C and kept overnight. Diluted primary anti-rabbit polyclonal antibodies were added to the cells, and included Shh (1:1,000, ab53281, Abcam), Gli1 (1:1,500, ab151796, Abcam), Ptch1 (1:1,500, ab53715, Abcam), basic fibroblastic growth factor (b-FGF; 1:200, ab99979, Abcam), transforming growth factor β (TGF-β; ab31013, Abcam), B-cell lymphoma-2 (Bcl-2)-associated X protein (Bax; 1:2,000, ab32503, Abcam), Bcl-2 (1:500, ab692, Abcam), and GAPDH (1:2,500, ab9485, Abcam). The rabbit anti-human monoclonal secondary antibody (1:200, bs-0361R-HRP, BIOSS Company, Beijing, China) was used then added. Subsequently, protein bands were visualized using electrochemical luminescence (ECL808-25, Biomiga, Inc., San Diego, CA, USA) and analyzed by Image J software (version 2.1.4.7; National Institutes of Health Inc.).
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4

Histomorphology and IHC Analysis of TMJ

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TMJ blocks were fixed, decalcified, dehydrated, and embedded using conventional methods. The 4 µm thick sections were used for histomorphology and immunohistochemical staining. The serial sections were stained with Safranin O as previously reported in order to observe histological and proteoglycan changes in the articular cartilage [26 (link),32 (link)]. IHC staining with anti-Ihh antibody (13388-1-AP, Proteintech, Philadelphia, IL, USA), anti-Smo antibody (ab113438, Abcam, Cambridge, UK), anti-PTHrP antibody (sc-20728, Santa Cruz, CA, USA), anti-PTH1R antibody (sc-20749, Santa Cruz, CA, USA), anti-Aggrecan antibody (ab36861, Abcam, Cambridge, UK), anti-ALP antibody (ab108337, Abcam, Cambridge, UK), anti-Collagen X antibody (ab58632, Abcam), anti-MMP13 antibody (18165-1-AP, Proteintech), and anti-Gli1 antibody (ab151796, Abcam) was performed as a standard, three-step, avidin-biotin complex staining procedure. Images were captured by a Leica light microscope (Leica 2500, Hessen, Germany). For negative controls, nonimmune goat serum was substituted for the primary antibody. The Sox9 expression in primary chondrocytes was detected with anti-Sox9 antibody Alexa Fluor @647 (ab196184, Abcam).
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5

Western Blot Analysis of DLBCL Signaling

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DLBCL cells were collected, washed with cold PBS buffer, and lysed on ice for 30 min using lysis buffer (RIPA buffer, 89900, Thermo Fisher). Proteins were harvested from the lysates, and protein concentrations were quantified. Then, equal amounts of proteins from each sample were loaded into SDS–polyacrylamide gels and transferred to a polyvinylidene difluoride (PVDF) membrane. The membrane was blocked with 5% skim milk for 1 h at room temperature (RT). Next, the membrane was incubated with primary antibodies at 4 °C overnight. Primary antibodies against GLI1 (ab151796), cyclin D1 (ab226977), CDK4 (137675), p27 (ab45872), MYC (ab39688) and β-actin (ab8227) were purchased from Abcam. Antibodies against GAPDH were purchased from ProteinTech (Chicago, USA). The membrane was then incubated with horseradish peroxidase (HRP)-conjugated secondary antibody for 1 h at RT. The bands were detected with ECL reagent purchased from Millipore Corp.
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6

Western Blot Analysis of Hh and PI3K/AKT Pathways

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Western blot was carried out to analyze activation-states of the Hh- and PI3K/AKT/mTOR pathways. Tumor tissue samples from the same animals used in the gene expression analysis were homogenized in RIPA Lysis and Extraction Buffer (Thermo Scientific) using the TissueLyser LT (Qiagen) and Bioruptor® (Diagenode). Cell debris was removed by centrifugation and the protein extract was stored at −20 °C. Protein extracts (100 μg) were run on SDS-PAGE using Mini-PROTEAN® TGX™ Precast Gels (Bio-Rad) and transferred to nitrocellulose membranes using the Trans-Blot® Turbo™ Transfer System (Bio-Rad). Antibodies specific to GLI1 (ab151796, Abcam), GLI2 (LS-C313075, LifeSpan BioSciences), S6 (#2217, Cell Signaling Technology), AKT (#9272, Cell Signaling Technology), p-AKT (#9271, Cell Signaling Technology) and GAPDH (ab9485, Abcam, used as control) were detected using Amersham ECL Rabbit IgG (NA934VS, GE Healthcare Life Sciences). SuperSignal® West Femto Maximum Sensitivity Substrate (Thermo Scientific) was used for detection and digitalized images were acquired using Fujifilm Luminescent Image Analyzer LAS-1000 (Fujifilm, Tokyo, Japan).
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7

Immunohistochemical Analysis of Cellular Markers

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For immunohistochemistry, sections were incubated with antibody against Bcl-2 (1:100, #ab32124, Abcam), Ki-67 (1:100, #ab16667, Abcam), proliferating cell nuclear antigen (PCNA) (1:100, #ab92552, Abcam), β-catenin (1:200, #ab22656, Abcam), Gli1 (1:100, #ab151796, Abcam), NICD1 (1:100, #07-1232, Millipore, Billerica, MA, USA), phospho-Akt (Ser473) (1:100, #ab81283, Abcam), phospho-GSK3β (Ser9) (1:100, #ab75814, Abcam) at 4 °C overnight. Primary antibodies were detected by the Dako EnVision Kit (Dako, Glostrup, Denmark) according to the manufacturer’s protocol. The staining intensity was evaluated and scored by two independent pathologists. The extent of staining was scored as 0, 0% of cells stained; 1, 1–25% of cells stained; 2, 26–50% of cells stained; 3, 51–75% of cells stained; or 4, >75% of cells stained. Staining intensity was scored as 0, negative; 1, weak; 2, intermediate or 3, strong. The final staining score was defined as the product of the extent and intensity scores.
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8

Histological Analysis of Rat Hindlimbs

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Rats were sacrificed using CO2 asphyxiation at 3 and 6 weeks post-surgery. Rat hindlimbs were removed and fixed in 10% formalin solution followed by decalcification for 3 days (Immunocal, Decal Chemical Corp, Tallman, NY). The tissues were then trimmed, embedded in paraffin wax, and serial 4 mm sections were made using a microtome. Following sectioning, 4 mm specimens were placed on slides and serial sections were blocked with 1% serum for 10 min at room temperature; antigen retrieval was performed incubating sections in trypsin for 15 min at 37˚C, Next, sections were incubated with each of the primary antibodies (IHH-1:500 Ab52919, Abcam Cambridge, MA; PTCH-1:1,000 Ab53715, Abcam Cambridge, MA; GLI 1–1:500 Ab151796, Abcam Cambridge, MA; PCNA-1:400 13–3,900, Life Technologies Grand Island, NY) for 1 h at room temperature An undiluted LSAB2 system-HRP was used (LSAB2 System-HRP K0609 Dako Carpinteria, CA). Finally, Liquid DAB + Substrate Chromogen system (Dako K3468 Carpinteria, CA) was applied. Negative controls were performed in exactly the same fashion with the exception of the primary antibody.
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9

Analyzing Hedgehog Pathway Activation

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EC9706 cells were seeded in 6-well plates and treated with cyclopamine as mentioned before. Total protein was extracted from the cells with RIPA buffer (Thermo) and quantified by a BCA kit (Beyotime Biotechnology, Shanghai, China). We analyzed 40 μg proteins by 10% separating gel and 5% stocking gel with sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and then transferred them to polyvinylidene fluoride (PVDF) membranes (Merck Millipore, Shanghai, China). After blocking with 5% skim milk (Millipore) at 25°C for 2 h, protein bands were separately incubated with rabbit anti-Gli-1 polyclonal antibody (1: 2000) (ab151796, Abcam) and β-actin polyclonal antibody (1: 1,000) (Santa Cruz Biotechnology) at 4°C overnight. Then, the bands were incubated with goat anti-rabbit antibody (1: 3000) (Jackson ImmunoResearch Laboratories, Inc. Shanghai, China) at 25°C for 1 h. An electrochemiluminescence (ECL) kit (Millipore) was used for analyzing the proteins.
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