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7 protocols using cd11c pacific blue

1

Multicolor Flow Cytometry of Myeloid Cells

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Cells harvested from the spleen were used for single color and multi-color staining controls. Control and tumor samples were resuspended at a concentration of 106 cells/100 uL in FWB in round bottom polystyrene tubes. Cells were stained with the following antibody fluorophore conjugates: CD45-PerCP/Cy5.5, CD11c-Pacific Blue, CD11b-AF700, MHCII-APC/Cy7, Ly6c-BV510, Ly6g-APC, CD38-FITC (Biolegend, San Diego, CA), F480-PE/Cy7 (Tonbo Bioscences, San Diego, CA), CD206-PE (R&D Systems, Minneapolis, MN) and propidium iodide (PI, Enzo Life Sciences, Farmingdale, NY). All antibody staining took place for 30 min at 4 °C in the dark. For all experiments, cells were acquired on the BD LSRII Fortessa flow cytometer. Compensation and sequential gating was performed with FlowJo software (FlowJo LLC, Ashland, OR). Populations of myeloid cells that were identified included macrophages, dendritic cells, granulocytic myeloid derived suppressor cells (G-MDSC), monocytic myeloid derived suppressor cells (M-MDSC) and M0, M1 and M2 macrophage phenotypes (Supplementary Fig. S1).
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2

Multicolor Flow Cytometry Analysis

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Following blockade of Fc receptors (FcR blocking reagent, Myltenyi Biotec), cells were labeled with fluorophore conjugated antibodies to the following proteins: human CD31-FITC (BD, mouse), CD34-PerCP (BD, mouse), CD45-Pacific Orange (Invitrogen, mouse), CD11b-PE-Cy7 (BD, mouse), human neuropilin-1-PE (Miltenyi Biotec, mouse), CD133-APC (Miltenyi Biotec, mouse), human VEGFR-1 (Abcam, rabbit), VEGFR-2-PE (R&D, goat), VEGFR-3 (ABBIOTEC, rabbit), CD11c-Pacific Blue (Biolegend, mouse), CD14-PerCP-Cy5.5 (Biolegend, mouse), and CD14-APC (BD, mouse). Unlabeled antibodies used included anti-podoplanin (ABBIOTEC, rabbit followed by a Cy5 goat anti-rabbit or Dylight-488 donkey anti-rabbit, both from Jackson Immunoresearch),and mouse VE-Cadherin (R&D, goat followed by an Alexa-647 donkey anti-goat from Invitrogen). Labeled cells were analyzed using a LSRII flow cytometer (BD Biosciences) equipped with a 610/20 nm filter on the violet detector.
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3

Single-Cell Immune Profiling of Mouse Spleens and Tumors

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Mice were euthanised at the end of the study; single-cell suspensions were prepared from the spleens and tumours as described in our previous study.18 (link) Spleen cells and tumour cells were stained with respective stain cocktails. Anti-mouse CD11b-PE (phycoerythrin) (101208), Ly6C-APC (allophycocyanin) (128015), Ly6G-FITC (fluorescein isothiocyanate) (127605), Gr1-PE/Cy7 (108416), CD11C-Pacific Blue (117321), major histocompatibility complex II (MHCII)-AF700 (107622), CD3-PerCP/Cy5.5 (100217), CD4-PE/Cy5.5 (100410), CD8-BV510 (100751), interleukin (IL)-2-PE (503808), IFN-γ-APC (505809), tumour necrosis factor (TNF)-α-FITC (506304), and Granzyme B-PE/Cy7 (372213) were purchased from Bio Legend (San Diego, CA). Cells were acquired through BD LSRII flow cytometer (BD Biosciences, San Jose, CA, USA). Flow cytometric analysis was performed by using the Flow Jo software (Tree Star Inc., Ashland, OR, USA). For co-cultures experiments, cells were sorted by using BD FACS ARIA III (BD Biosciences, San Jose, CA, USA).
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4

Multiparametric Flow Cytometry for Cell Surface and Intracellular Markers

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Anti-ICOSL (MIH12), ICOSL-APC, CD16-PE, anti–VCAM-1-PE, anti–E-Selectin-PE, CD27-PE, CD19-APC, CD45-PerCP/Cy5.5, goat anti-rabbit Alexa Fluor 488, goat anti-mouse Alexa Fluor 633, and Alexa Fluor 568 were from Thermo Fisher Scientific. CD19-FITC, IgD-FITC, FoxP3-A647, CD14-FITC, and CD45RA-PE were from BD Biosciences. Antibodies against RCAS1 and β-actin were from Cell Signaling Technology. HLA-DR-PerCP, CD11c-Pacific Blue, CXCR5-BV421, CCR7-APC/Cy7, PD1-PE/Cy7, and ICOS-APC were from BioLegend. BDCA1 (CD1c)-APC, BDCA3 (CD141)-PE, CD4-FITC, and ICAM-1-FITC were from R&D Systems.
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5

Multiparameter Flow Cytometry Analysis of Myeloid Cells

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Bone marrow-derived mEOSs were stained with anti-mouse CD45-APC-Cy7 (BioLegend); CD11b-Pe-Cy7 (BD Biosciences, San Jose, CA, USA); CCR3-Pe-Cy7 (BioLegend); CD44-Pe-Cy7 (BioLegend); CD62-L-Pe-Cy7 (BD Biosciences); Siglec-F-APC-Cy7 (BD Biosciences); CD11c-Pe-Cy7 (BioLegend); and MHCII-Pe-Cy7 (BioLegend). Airway mEOSs were stained with CCR3-Pe-Cy7, CD45-APC-Cy7 and NK1.1-biotin (Ablab, Vancouver, Canada); CD90.2-biotin (BioLegend); CD19-biotin (BioLegend); Siglec-F-BV711 (BD Biosciences); CD11c-Pacific Blue (BioLegend); and Ly-6G-PE (BioLegend). Cells were analyzed by using a BD LSRFortessa cytometer (BD Biosciences) and FlowJo software V10 (BD, Franklin Lakes, NJ, USA).
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6

Comprehensive Immune Cell Profiling of Murine Colonic Tissue

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Immune cells isolated from colonic lamina propria or mLN were washed, and Fc-Block (CD16/CD32) was performed on ice for 15 min. Antibody incubation was performed at 4 °C in the dark. Antibody incubation was performed using the following dilutions CD45-FITC (BioLegend) 1:100, NK1.1-PE (eBioscience) 1:80, CD3e-AF532 (eBioscience), CD11b-PerCP/Cy5.5 (Biolegend) 1:50, CD4-BV711 (BioLegend) 1:200, CD19-BV605 (BioLegend) 1:100, CD8-BV785 (BioLegend) 1:100, CD11c-Pacific Blue (BioLegend) 1:50. Cell viability was assesses using Zombie Red™ Fixable Viability Kit Biolegend 1:1000. Data were acquired using SA3800 Spectral Analyzer (Sony Biotechnology) and were analyzed using SA3800 Software version 2.0.5.54250.
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7

Flow Cytometry Analysis of Splenic DC Subsets

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Anti-mouse CD11c-FITC, CD8-PE-Cy7, TCRβ-PE-Cy5.5, CD11b-Pacific Blue, B220-PE-Cy7, CD4-Pacific Blue, Foxp3-APC and CD86-PE antibodies were purchased from BD Biosciences. MHCII-AF700 and CD11c-Pacific Blue were purchased from Biolegend. 2×106 cells were stained in PBS containing 5% fetal calf serum (FCS) and 0.1% w/v sodium azide at 4°C for 30 min, washed with the same buffer and fixed with 1% paraformaldehyde containing 2 mM EDTA. Data were acquired on 4-laser LSR II using FACSDiva software (Becton Dickinson) and analyzed using Flow Jo 9.0 software (Tree Star, OR). For splenic DC subset analyses, TCRβ- CD11c+ cells were gated on and the MHCII and CD86 expression levels evaluated in CD11c+CD8+ and CD11c+CD11b+ cells.
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