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Ion torrent variant caller plugin

Manufactured by Thermo Fisher Scientific
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The Ion Torrent Variant Caller Plugin is a software tool designed to analyze and identify genetic variations in DNA sequences generated by Ion Torrent sequencing platforms. It provides functionality for detecting single nucleotide variants, small insertions and deletions, and other types of genetic variants within the sequence data.

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Lab products found in correlation

Ion ampliseq cancer hotspot panel v2, by Thermo Fisher Scientific (2 mentions) Ion reporter, by Thermo Fisher Scientific (2 mentions) Ion pgm hi q chef kit, by Thermo Fisher Scientific (2 mentions)

Spelling variants of this product

Ion Torrent (99 citations) Variant Caller (9 citations) Torrent Variant Caller (8 citations) Ion Torrent Variant Caller (2 citations)

2 protocols using ion torrent variant caller plugin

1

Ion AmpliSeq Cancer Hotspot Sequencing

Check if the same lab product or an alternative is used in the 5 most similar protocols
Target regions were amplified using the Ion AmpliSeq Cancer Hotspot Panel v2 (Life Technologies). Template DNA was prepared using the Ion PGM Hi-Q Chef Kit (Life Technologies) and sequencing was run on the Ion PGM using the Ion 314 chip. Reads were aligned to the hg19 reference and the analysis was carried out using the Ion Torrent Variant Caller Plugin and the Ion Reporter (Life Technologies).
Kasai F., Hirayama N., Ozawa M., Satoh M, & Kohara A. (2018). HuH-7 reference genome profile: complex karyotype composed of massive loss of heterozygosity. Human Cell, 31(3), 261-267.
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2

Ion AmpliSeq Cancer Hotspot Sequencing

Check if the same lab product or an alternative is used in the 5 most similar protocols
Target regions were amplified using the Ion AmpliSeq™ Cancer Hotspot Panel v2 (Life Technologies, Tokyo, Japan). Template DNA was prepared using the Ion PGM™ Hi-Q™ Chef Kit (Life Technologies) and sequencing was run on the Ion PGM using the Ion 316™ chip. Reads were aligned to the hg19 reference data and the analysis was carried out using the Ion Torrent Variant Caller Plugin and the Ion Reporter (Life Technologies).
Shioda S., Kasai F., Ozawa M., Hirayama N., Satoh M., Kameoka Y., Watanabe K., Shimizu N., Tang H., Mori Y, & Kohara A. (2017). The human vascular endothelial cell line HUV-EC-C harbors the integrated HHV-6B genome which remains stable in long term culture. Cytotechnology, 70(1), 141-152.
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