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56 protocols using diethylenetriaminepentaacetic acid

1

Mitochondrial Hydrogen Peroxide Quantification

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Approximately 50 mg of liver tissue was homogenized in 1 ml of homogenization buffer containing 25 mM Hepes pH7.4, 1 mM EDTA, 0.25 M sucrose, 2 mM MgCl2, 1 μM butylated hydroxytoluene (BHT), 1:200 dilution of Sigma P8340 and 1 μM diethylenetriaminepentaacetic acid (Sigma-Aldrich). The homogenates were centrifuged at 500 × g for 5 min to pellet nuclei and debri. The resultant supernatant was centrifuged at 10,000 × g for 10 min at 4 °C to obtain mitochondria. The pellets were resuspended in 150 μl homogenization buffer. About 20 μL solution was saved for measuring protein concentration.
Mitochondrial H2O2 was detected using Amplex Red assay as described39 (link). The working solution was prepared using 100 μL of 10 mM Amplex Red reagent (Thermo Fisher Scientific), 2 μL of 1000 U/ml horseradish peroxidase (HRP) and 10 ml of 50 mM potassium phosphate (pH7.7) with 0.5 mM diethylenetriaminepentaacetic acid (Sigma-Aldrich). 50 μL of sample or standard was pipetted into 96 plates, followed by addition of 50 μl of the Amplex Red reagent/HPR working solution. The reaction mixture was protected from light and incubated at room temperature for 30 min. The fluorescence was measured with excitation in the range of 530–560 nm and emission at 590 nm. Mitochondrial H2O2 levels were normalized to protein levels.
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2

Quantitative Analysis of Oxidative Stress Markers

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As previously described (12 (link), 13 (link)), cells or the X/XO system was pre-incubated with Krebs-HEPES buffer containing freshly prepared 10 μM HE (Cayman Chemical), the chelating agent diethylenetriaminepentaacetic acid (0.1 mM, Sigma), and DMSO/bortezomib at 37°C for 60 min. Three hundred microliters of the supernatant fraction was mixed with an equal amount of ice-cold acetonitrile containing 0.1% formic acid and 1 μM of 3,8-diamino-6-phenylphenanthridine (DAPP) as an internal control. After centrifugation at 10,000 × g at 4°C for 5 min, the supernatant was analyzed using the LC-MS/MS system (LCMS-8045, Shimadzu, Kyoto, Japan). Analytes were detected using the multiple-reaction monitoring mode with the following transitions: 316.30 > 210.10 (HE), 329.90 > 300.00 (2-OH-E+), 314.30 > 284.05 (E+), and 286.25 > 208.10 (DAPP). The contents of HE, 2-OH-E+, and ethidium (E+) were expressed as a peak area ratio to DAPP.
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3

Quantification of Tissue Ascorbate

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Tissue ascorbate was measured as described previously32 (link). Briefly, frozen glioma powder was resuspended in potassium phosphate buffer (10 mM, pH 7.4) (Sigma-Aldrich, St Louis, MO, USA). Protein was precipitated using 0.54 M perchloric acid (Sigma) containing 100 μM diethylene triamine penta-acetic acid (Sigma), the supernatant collected following centrifugation, and stored at − 80 °C until use. Total ascorbate was measured; any dehydroascorbate present was reduced to ascorbate by incubation with 32 mM tris(2-carboxyethyl)phosphine (Sigma) for 3 h on ice prior to analysing samples in duplicate on the Ultimate High Performance Liquid Chromatography unit (HPLC, Thermo Fisher Scientific, Waltham, MA, USA). Analysis was performed in reversed phase separation mode coupled to an electrochemical detector (Ultimate 3000 ECD-3000RS electrochemical detector and a Model 6011RS coulometric cell). The column oven was maintained at 30 °C and the autosampler at 4 °C. The samples (20 µL) were injected with the mobile phase (80 mM sodium acetate, 0.54 mM DTPA, 0.017% n-octylamine) running at a constant rate of 1.2 mL/min. A standard curve ranging from 1.25 to 40 µM ascorbate using sodium-L-ascorbate (Sigma) was made fresh for each run. Ascorbate content for the 26 glioblastoma samples has recently been published32 (link).
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4

Quantification of Oxidative Stress Markers

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1,4-Benzoquinone, dimethyl sulfoxide, oligomycin A, adenosine 5’-triphosphate (ATP) disodium salt hydrate, 1-octane-sulfonic acid, sodium phosphate, acetonitrile, glutathione, glutathione disulfide, and diethylenetriaminepentaacetic acid were obtained from Sigma Aldrich (St. Louis, MO, USA).
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5

Biochemical Assay Reagents and Antibodies

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Sodium diethyldithiocarbamate, FeSO4 7H2O, diethylenetriaminepentaacetic acid, and glutathione ethyl ester were purchased from Sigma‐Aldrich. N‐Hydroxysulfosuccinimidobiotin was obtained from Merck, dithiothreitol from Promega, streptavidin–Sepharose from GE Healthcare Bio‐Sciences, and Protein A/G‐Plus agarose from Santa Cruz Biotechnology. Osmotic mini‐pumps were purchased from Alzet and CL from Sigma‐Aldrich. Dihydroethidium and N‐(Biotinoyl)‐N′‐(iodoacetyl) ethylenediamine were obtained from Invitrogen. Monoclonal antibodies were purchased from the following vendors: β1 subunit of Na+‐K+ ATPase from Upstate Biotechnology; anti‐glutathione from Virogen, eNOS antibody from Sigma‐Aldrich, and p47phox, phosphorylated eNOS116, phosphorylated eNOS1177, neuronal NOS (nNOS), and α tubulin from Santa Cruz Biotechnology. All chemicals used in Krebs solutions were analytical grade and were obtained from BDH.
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6

Antibiotic-Resistant P. aeruginosa Evaluation

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Three P. aeruginosa strains (ATCC 27853, ATCC 2110, and ATCC 2112) were selected for this assay. The strains ATCC 2110 (resistant to ampicillin, cefazolin, cefotaxime, cefoxitin, nitrofurantoin, trimethoprim-sulfamethoxazole, and tetracycline) and ATCC 2112 (resistant to amoxicillin-clavulanic acid, ampicillin, cefazolin, cefpodoxime, ceftriaxone, cefotaxime, cefuroxime, cefoxitin, nitrofurantoin, trimethoprim-sulfamethoxazole tetracycline, and tigecycline) were chosen due to their multidrug-resistant characteristics. The strain ATCC 27853 was selected due to the absence of antibiotic resistance. Each strain was evaluated solely in triplicate.
To simulate in vivo conditions, SCFM2 artificial sputum medium (4 g DNA salmon sperm, GoldBio, St Louis, MO, USA; 5 g swine stomach mucin, Sigma-Aldrich; 5 g casamino acids, Difco; 5.9 mg diethylenetriamine pentaacetic acid, Sigma-Aldrich; 5 g NaCl, Dynamic; 2.2 g KCl, Dynamic; 5 mL egg yolk emulsion; and 1000 mL distilled water, pH = 6.9) that mimics a cystic fibrosis model was employed [42 (link)]. After connecting to the flow system, phage cocktail-coated and non-coated tubes were supplied with a continuous flow of SCFM2 culture medium inoculated with 1 × 105 CFU/mL of P. aeruginosa strains for 24 h. After 24 up to 168 h, the system was supplied with sterile SCFM2 culture medium without recirculation [33 (link)].
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7

Peptide Synthesis and Characterization

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The peptides PSELT (H-Phe-Gln-Ile-Cys-Val-Ser-Sec-Gly-Tyr-Arg-OH), [Ser46,49] PSELT [called inert PSELT (I-PSELT) as a control], and PSELT-dansyl were synthesized by Fmoc solid phase methodology on an automated peptide synthesizer (CEM, Saclay, France) as previously described [19 (link)]. KCl, NaCl, NaHCO3, CaCl2, MgSO4, KH2PO4, NaH2PO4, Na2HPO4, mannitol, glucose, Na-pyruvate, β-nicotinamide adenine dinucleotide (NADH), reduced disodium salt hydrate, 2,4 dinitrophenylhydrazine (DNPH), 2-thiobarbituric acid (TBA), bovine serum albumin (BSA), butylated hydroxyanisole, diethyl ether, ethylenediaminetetraacetic acid (disodium salt), diethylenetriamine pentaacetic acid, pyrogallol, streptomycin sulfate, tween-20, hydrogen peroxide (H2O2), and urea were purchased from Sigma Aldrich (St. Louis, MO, USA). Tunicamycin (TM) was from Cayman Chemical (Ann Arbor, MI, USA), Dulbecco’s Modified Eagle Medium/Nutrient Mixture F-12 (DMEM/F-12), penicillin/streptomycin and fetal bovine serum (FBS) were provided by Thermo Fisher Scientific (Waltham, MA, USA). All the solutions were freshly prepared before starting the experiments. Absolute ethanol, ethyl acetate, hydrochloric acid, methanol, and trichloroacetic acid (TCA) were from Carlo Erba Reagents (Cornaredo, Milano, Italy).
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8

Measuring Ascorbate Levels in BMDMs

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BMDMs were isolated and cultured for 7 days as described above. On day 7, cells were incubated with 50, 200 or 500 µM sodium ascorbate (Sigma Aldrich, St. Louis, MO, USA) and harvested at 30 min or 24 h to measure ascorbate content, or with 500 μM sodium ascorbate for 0, 2, 4, 6, 8 and 24 h. Wells were washed twice with PBS (Life Technologies, Carlsbad, CA, USA) and cells detached with two rounds of incubation in TrypLE (Life Technologies, Carlsbad, CA, USA) (200 µL each) and vigorous trituration. Cells were pelleted in microfuge tubes using a swing out rotor (500× g for 3 min at RT) and extracted with 0.54 M perchloric acid containing Diethylenetriamine penta-acetic acid (Sigma Aldrich, St. Louis, MO, USA) for ascorbate analysis [33 (link)]. Precipitated proteins were pelleted (10,000× g for 10 min at 4 °C) and ascorbate was measured in the supernatant using HPLC with electrochemical detection as previously described [34 (link)]. The concentration was assessed relative to standards ranging from 1.25 to 40 μM ascorbate made fresh for each analysis.
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9

Cyanate Modification of HDL

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A pool of dialyzed HDLs isolated from healthy subjects (4 mg protein/mL) was incubated with 1 mmol/L and 10 mmol/L potassium cyanate (KCN) in PBS containing 100 μmol/L diethylenetriaminepentaacetic acid (Sigma-Aldrich) for 4 h at 37 °C, as previously described [27 (link)]. Control HDLs were incubated under the same conditions with PBS instead of potassium cyanate. HDLs were then immediately and extensively dialyzed three times against sterilized 0.01% (wt/vol.) EDTA endotoxin-free PBS for 18 h at 4 °C in the dark, and then immediately used for analysis.
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10

Oxidative Stress Measurement Protocol

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Trizma base, cacodylic acid, diethylenetriaminepentaacetic acid (DTPA), pyrogallol, ethylenediaminetetraacetic acid disodium salt dehydrate (EDTA), glutathione reductase (from Baker’s yeast; GSH-R), L-glutathione reduced (GSH), β-nicotinamide adenine dinucleotide hydrate (NADPH), pipes, potassium ferricyanide, ammonium sulfamate, lead acetate, trichloroacetic acid (TCA), 2,4- dinitrophenylhydrazine (DNPH), guanidine hydrochloride, and serum albumin from bovine were purchased from Sigma-Aldrich Co. LLC. (USA). The 2-thiobarbituric acid was purchased from Alfa Aesar (USA). Ethanol, ethyl acetate, and chloroform were obtained from J. T. Baker (USA). Deionized water was made with a Milli-Q Water Purification Equipment (Millipore SAS, France).
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