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76 protocols using anti ifn γ pe

1

Characterization of Skin Barrier Function

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Sodium citrate, Bovine Serum Albumin (BSA), DMSO, saponin, Capsaicin,
Resiniferatoxin and Staphylococcal Enterotoxin B (SEB) were from Sigma-Aldrich.
HDM extracts of the strain Dermatophagoides farinae were
purchased from Greer Laboratories. The following antibodies were obtained from
Covance: anti-Keratin (K) 14, anti-K6, anti-K10, anti-loricrin and
anti-filaggrin. Anti-Claudin 1 was from Abcam. Alexa594-conjugated goat
anti-rabbit IgG, Alexa488-conjugated avidin and DAPI were from Life Technologies
Invitrogen. The following reagent and antibodies were from eBioscience
Thermofisher Scientific: CellTrace™ CFSE Cell Proliferation Kit,
anti-CD4-APC, anti-IL4-PE, anti-IL-5-PE, anti-IL-13-PE, and anti-IFNγ-PE.
Purified NA/LE Rat Anti-Mouse CD124 (mIL4R-M1) or control Istoype (R35-95) were
from BD Bioscience. MYD88 inhibitory peptide (i.e., a cell permeant peptide
sequence that selectively blocks MYD88 homodimerization) and a control peptide
(i.e., an inactive and cell permeant truncated form of the MYD88 inhibitory
peptide) were from Novus. Alternaria alternata (A. alternata),
Dermatophagoides pteronyssinus (D. pteronyssinus)
, ragweed and
German Coackroach were all from Stallergenes Greer.
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2

NK Cell-Mediated Cytotoxicity Assay

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Target K562 and effector NK cells were cocultured at a 1:1 ratio (15 × 104 cells of each cell type) in 200 µl RPMI medium (RPMI 1640 medium, Life Technologies, Carlsbad, CA, USA) in an U-bottom 96-well plate (Greiner Cellstar® 96-well plates, Sigma-Aldrich) in the presence of anti-CD107a-APC (BD Biosciences). Brefeldin A and Monensin (BD Golgiplug and Golgistop, BD Biosciences) were added after 1 h of culture. After an additional 5 h of culture, cells were collected, stained for surface CD56 (anti-CD56-PeCy7, BD Biosciences), subsequently prepared for intracellular staining with IFN-γ (anti-IFN-γ-PE, BD Biosciences) using a fixation/permeabilization solution kit (BD Biosciences), and finally measured on a FACS Canto II.
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3

T Cell Phenotyping and Cytokine Profiling in Pancreatic Immunity

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For T cell phenotyping, single cell suspensions from pancreatic LNs or PA infiltrating cells were prepared and stained as described (26 (link)). For intracellular cytokine staining, T cells were restimulated ex vivo with hemagglutinin (HA)-specific peptides during 5 h before staining as previously described (26 (link)). The mAbs used were anti-CD61 (ITGβ3)-FITC, anti-CD51 (ITGαV)-PE, anti-CD49e (ITGα5)-APC, anti-CD183 (CXCR3)-Alexa Fluor 780, anti-CD29 (ITGβ1)-Pacific blue (BioLegend, San Diego, CA, USA); anti-CD4-V500, anti-CD4-FITC, anti-CD90.1 (Thy1.1)-PerCP, anti-CD90.1 (Thy1.1)-V450, anti-CD8a-V450, anti-CD62L-APC, anti-IL-2-APC, anti-IFNγ-PE (BD Pharmingen); anti-CD8a-APC-Alexa Fluor 780, anti-CD25-APC-Alexa Fluor 780, and anti-KLRG1-PE-Cy7 (eBioscience). Cells were analyzed on a FACSCanto II or a LSR Fortessa apparatus using Diva software (BDB).
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4

NK Cell-Mediated Cytotoxicity Assay

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NK cells were co-cultured with tumor cells at a 1:1 ratio for 4 h in the presence of anti-CD107a-APC (H4A3; BD Biosciences), BD GolgiStop™ (BD Biosciences), and BD GolgiPlug™ (BD Biosciences). After 4 h, the cells were washed with FACS buffer and stained with anti-CD3-FITC, anti-CD56-APC-eFluor®780 (CMSSB; Thermo Fisher Scientific, eBioscience), and 7-AAD (Beckman Coulter). The cells were then permeabilized by BD CytoFix/CytoPerm™ (BD Biosciences) and stained with anti-IFN-γ-PE (B27; BD Biosciences) and anti-TNF-α-PE-Cy7 (Mab11; Thermo Fisher Scientific, eBioscience). Stained cells were acquired on an LSR Fortessa and the data analyzed using FlowJo software.
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5

MART-1 SLP-loaded MUTZ-DC Activation

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1*105 MUTZ-DC were cultured overnight in the presence of the maturation-inducing cytokine cocktail with different concentrations of a 25-mer MART-1 synthetic long peptide (SLP) (aa16-40L), which was synthesized in-house, as described previously [22 (link)]. Next, loaded MUTZ-DC were harvested and cultured with a MART-1aa26-35 recognizing cytotoxic T cell line (>95% pure by dextramer binding analysis) for 5 hours, in the presence of 1 μl/ml of the golgi inhibitor GolgiStop (BD Biosciences). The cells were subsequently washed and stained with MART-1aa26-35 dextramer (Immudex, Copenhagen, Denmark) for 15 minutes, followed by 15 minutes of labeling with CD3 Horizon and CD8 (BD Biosciences). After washing, the cells were fixed and permeabilized using BD Cytofix/Cytoperm solution (BD Biosciences), following manufacturer’s protocol. The intracellular IFNγ levels were determined by staining for 30 minutes at 4°C with anti-IFNγ-PE (BD Biosciences), after which the cells were washed and IFNγ production was analyzed using flow cytometry (LSRFortessa, BD Biosciences), as a measure of activation.
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6

Comprehensive T-cell Characterization Assays

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IFN-γ ELISPOT and cytometric bead array (CBA) assays were carried out as previously described [37 (link)] and intracellular cytokine staining and staining of cell surface molecules was carried out as previously described by Burgers et al., 2006 [47 (link)]. The following antibodies were used; anti-CD3+ Alexa 700, anti-CD4+ PE-Cy7, anti-CD8+ APC-Cy7, anti-CD62L APC, and anti-CD44 FITC). The cytokine antibodies were all PE-conjugated (0.2μg anti-TNF-PE, 0.06 μg anti-IL-2-PE, 0.06 μg anti-IFN-γ-PE) and were obtained from BD biosciences. The anti-CD4+ PE-Cy7, anti-CD8+ APC-Cy7 were obtained from BD biosciences. All the other antibodies were obtained from eBioscience.
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7

Cytokine Profiling of Activated Splenocytes

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Splenocytes were obtained from mice and incubated at 37 °C for 6 h in 48-well plates coated with anti-CD3 and anti-CD28 antibodies (1 mg ml−1 each; eBioscience, San Diego, CA, USA). Cells were stained for 30 min at 4 °C with surface-specific antibodies (anti-CD3-allophycocyanin, anti-CD4-FITC and anti-CD8-PE–Cy5; BD Biosciences, Franklin Lakes, NJ, USA) and then fixed and permeablized through incubation for 10 min in 4% paraformaldehyde at room temperature. Cells were incubated for 30 min at room temperature with antibodies specific for candidate cytokines (anti-IFN-γ–PE, -IL-17–PE, -IL-4–PE and -IL-10-PE; BD Biosciences) and then analyzed on a FACSCalibur flow cytometer (BD Biosciences) using the CellQuest software (CellQuest, Largo, FL, USA).
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8

Cytokine profiling of activated T cells

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Activated T cells were re-stimulated with 20 nM phorbol 12-myristate 13-acetate (PMA) (Sigma-Aldrich) and 1 μM ionomycin (Sigma-Aldrich). After incubation for 1 h at 37 °C, a protein transport inhibitor Brefeldin-A (Invitrogen) was added, followed by 4-h incubation. Surface Fc receptors were blocked for 15 min at 4 °C using Human TruStain FcX™ (Biolegend). Cells were stained with anti-CD8-APC/Fire™750, fixed with BD Cytofix/Cytoperm (BD Biosciences) and stained with anti-CD4-AF488 (BD Biosciences), anti-IFN-γ-PE (BD Biosciences), anti-TNF-α-BV650 (BD Biosciences), and IL-2-APC (eBioscience). Cells were acquired on the NovoCyte flow cytometer and analyzed using FlowJO v10.
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9

Murine B Cells Cytokine Production

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Purified murine B cells (5 × 105 cells/well) were stimulated with ArtinM (0.312–5.0 µg/mL), PMA (50 ng/mL) plus ionomycin (1 µM), or culture medium alone. After 12 h of incubation at 37 °C, the protein transport inhibitor was added (BD GolgiStopTM; 1 µL every 1.5 mL of the culture), and after 12 h the cells were washed and fixed/permeabilized with BD Cytofix/CytopermTM Plus (20 min at 4 °C). The cells were washed with wash buffer (BD Perm/WashTM buffer) and resuspended in Perm/WashTM buffer with anti-IFN-γ PE (BD Pharmingen™) and anti-IL-12 FITC (BD PharmingenTM) antibodies. After 40 min of incubation at 4 °C, the cells were washed and resuspended in Perm/WashTM buffer, and the frequency of positive B cells for IL-12 and IFN-γ (IL-12+/IFN-γ+) was measured using flow cytometry (Guava EasyCyte™ Mini System).
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10

Multiparametric Flow Cytometry of Cytokine-Producing T Cells

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Intracellular staining for the cytokines Interferon-γ (IFN-γ), Tumor necrosis factor α (TNF-α) and IL-2 was performed as originally mentioned by Jung et al. [59 (link)]. Briefly, cells after one week MLPC were restimulated with appropriate antigens in the presence of Brefeldin A for six hours (Biolegend, San Diego, CA, USA). Cells were harvested for live-dead NEAR (Invitrogen, Thermo Fisher Scientific, Waltham, MA USA) and surface marker staining followed by fixation using paraformaldehyde (PFA, Sigma Aldrich). For surface marker staining the following antibodies were used: CD3 Alexa fluor700 (Biolegend, Fell, Germany), CD8 Peridinin chlorophyll (PerCP, Biolegend), CD197 (CCR7) phycoerythrin Cy7 (eBioscience, San Diego, CA, USA) and CD45RA fluorescein isothiocyanate (FITC, BD Biosciences, Heidelberg, Germany). After permeabilization cells were blocked by FcR blocking reagent (Miltenyi Biotec) then stained for intracellular cytokines using anti-IFN-γ PE, anti-TNF-α Pacific Blue and anti-IL-2 AmCyan antibodies (BD Biosciences, Heidelberg, Germany). Samples were measured with the flow cytometer BD LSR II and analyzed using the BD FACSDiva analysis software (BD Biosciences).
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