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98 protocols using gsk 3β

1

Diosgenin-Induced Apoptosis Mechanisms

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Diosgenin, RIPA buffer was obtained from Sigma Aldrich (St. Louis, MO, USA). RPMI-1640, DMEM medium, fetal bovine serum (FBS), trypsin, penicillin, and streptomycin were purchased from Gibco (Rockville, MD, USA). PI (propidium iodide), Annexin V-FITC/PI apoptosis detection kit, z-VAD-fmk, MTS, Hoechst 33258, and AO/EB (acridine orange/ethidium bromide) were purchased from Abcam (Cambridge, United Kingdom). 5-Ethynyl-2-deoxyuridine (EdU) was obtained from RiboBio (Guangzhou, China). The primary antibodies against GAPDH, Bax, Bcl-2, Caspase- 3, p21, PARP-1, cytochrome c (CYT C), COX IV, β-catenin and GSK3β were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Other antibodies were from Abcam. Hematoxylin–Eosin Staining Kit was from Solarbio (Beijing, China). The EliVision kit was from Maixin Biotech (Fuzhou, China).
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2

GSK-3β Immunofluorescence Staining Protocol

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The cells in different groups were grown on 6-well dishes and then treated with 4% formaldehyde (pH 7.2) for 1 h. The permanent cells were washed with normal PBS twice and blocked with 5% bovine serum albumin (BSA) and 0.3% Triton X-100 in PBS for 0.5 h. After treatment, the cells were stained with GSK-3β (Santa Cruz, USA) primary antibodies overnight at 4 °C. The cells were washed with PBS twice and then stained with Texas red-labeled secondary antibodies for 3 h. The cells were washed twice and then stained with 4′,6-diamidino-2-phenylindole (DAPI). Fluorescence images were obtained using a BMI 3000 fluorescence microscope (Zeiss, Germany).
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3

Western Blot Analysis of Drosophila Protein

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For western blotting, total protein from 20 heads of 3-day-old flies was isolated from each indicated group and subjected to SDS-gel electrophoresis. Following transfer, membranes were probed with antibodies to Aβ42 (BioLegend, San Diego, CA, USA), actin (Developmental Studies Hybridoma Bank, Iowa city, IA, USA), GSK-3β (Santa Cruz Biotechnology, Dallas, TX, USA), phospho-Drosophila AKT (Ser505), AKT, phospho-GSK-3α/β (Ser21/9), phospho-Dp70S6K (Thr398), phospho-p38 (Thr180/Tyr182), phospho-ERK (Thr202/Tyr204), ERK, phospho-SAPK/JNK (Thr183/Tyr185) or JNK (Cell Signaling Technology, Beverly, MA, USA). Western blot analyses were conducted using standard procedures with horseradish peroxidase-conjugated secondary antibodies.
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4

Proximity Ligation Assay for Protein Interactions

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Proximity ligation assay was performed with Duolink In Situ Starter Kit (Sigma) according to manufacture’s protocol as described previously5 (link). The slides were stained with a combination of LSD1 (Cell Signaling Technology), GSK3β (Santa Cruz Biotechnology) antibodies, as well as an IgG control antibody (Sigma) The slides were then examined using a Leica TCS SP2 confocal laser scanning microscope (Leica Microsystems GmbH, Wetzlar, Germany) and the numbers of interaction signal was quantified using the ImageJ software
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5

siRNA-Mediated Gene Silencing Assay

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Small interfering RNA oligonucleotides specific to EGFR, GSK‐3α, and GSK‐3β were obtained from Santa Cruz Biotechnology. The siRNA negative control was purchased from Thermo Fisher Scientific. Transfection of siRNAs into cells was carried out using Lipofectamine RNAimax (Thermo Fisher Scientific) according to the manufacturer’s instructions.
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6

Exosome Isolation and GSK3β Phosphorylation Analysis

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The isolation of exosomes was approved by western blot analysis using the antibody of CD63 (Santa Cruz Biotechnology, Inc., Dallas, TX, USA). Also, the phosphorylation of GSK3β at Ser-9 position was determined in the cells treated with the doses of 2 and 4 µg/mL the pooled exosomes obtained from normal-weight (PN-Exo) females and PO-Exo as well as in the cells treated with the dose of 4 µg/mL obese exosome (O-Exo) and normal-weight exosome (N-Exo) using the western blot analysis. Briefly, the cells were lysed by RIPA buffer (50 mM Tris–HCl, 1% Triton X-100, pH 7.4, 0.2% SDS, 0.2% sodium deoxycholate, 1 mM PMSF and 1 mM Na-EDTA) containing protease inhibitor cocktail and then, the cell lysate was fractionated using SDS-PAGE and transferred to a polyvinylidene difluoride (PVDF) membrane. Five percent non-fat dry milk was applied to blocking. Immunoblots were incubated with antibodies against GAPDH, p-GSK3β, and GSK3β (Santa Cruz Biotechnology, Inc., Dallas, TX, USA) for 18 h, followed by incubation with horseradish peroxidase (HRP)-conjugated secondary antibodies for 60 min. The bound proteins were observed by chemiluminescence using enhanced electrochemiluminescence (ECL) reagents and subsequent autoradiography. Eventually, the protein bands were quantitated using ImageJ software.
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7

Antibody Characterization and Applications

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The following antibodies were from Sigma: anti-hemagglutinin (HA)-tag (H3663; 1:1,000 IB), anti- FLAG-tag (F1804; 1:1,000 IB, 2 μg IP), and anti-Myc-tag (M4439; 1:1,000 IB, 2 μg IP). The following antibodies were from Cell Signaling Technology: non-phosphor (active) β-catenin (#8814; 1:100 IHC), Axin2 (#2151; 1:1,000 IB), β-TrCP (#4394; 1:1,000 IB), PKCδ (#2058; 1:1,000 IB), and phosphor-PKCδ (Ser643/676) (#9376; 1:1,000 IB). The following antibodies were from Santa Cruz Biotechnology: β-catenin (sc-7963; 1:1,000 IB, 2 μg IP), PKCδ (sc-937; 1:100 IF), Lamin B (sc-6216; 1:1,000 IB), tubulin (sc-8035; 1:1,000 IB), normal rabbit IgG (sc-2345; 2 μg IP), normal mouse IgG (sc-2025; 2 μg IP), β-actin (sc-47778; 1:10,000 IB), GST (sc-138; 1:1,000 IB), GSK-3β (sc-9166; 1:1,000 IB) and Cyclin D1 (sc-753; 1:1,000 IB). The following antibodies were from Bethyl Laboratories: TRIM33 (A301-060A; 1:1,000 IB, 2 μg IP), TRIM33 (IHC-00216; 1:100 IHC). The following antibody was from BD Transduction Laboratories: β-catenin (610153; 1:100 IF). The following antibody was from Abcam: Na-K-ATPase (ab76020; 1:1,000 IB). The phosphor-Ser715 β-catenin antibody (1:1,000 IB; 1:100 IHC) was produced by Signalway Antibody (College Park, MD).
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8

Western Blot Protein Analysis

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The detailed process of western blot analysis can be found in a previous study (19 (link)). The antibodies used were: Flt1, cyclin D1, p21, matrix metalloproteinase 2 (MMP2), MMP9, E-cadherin, vimentin, VE-cadherin, Wnt1, β-catenin, GSK-3β, p-GSK-3β and β-actin were all from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA).
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9

Mitochondrial, Nuclear, and Cytosolic Protein Fractionation and Analysis

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A 20 mg piece of frozen mixed ventricle was homogenized in 125 μL of sucrose buffer for subsequent extraction of the mitochondrial, nuclear, and cytosolic fractions [39 (link)]. Proteins were assayed as previously described [40 (link)] and incubated for 16 h with primary antibodies (diluted 1:100 to 1:4000) against GCLC, GCLM (provided by Dr. Forman), Nox4, Vdac1 (Abcam, Cambridge, MA, USA), NF-κB p65, acetylated-NF-κB (Lys 310), IκBα, p-IκBα, H3, (Cell Signaling, Danvers, MA, USA), Keap1, Nrf2, GSK3β, Parkin, GAPDH (Santa Cruz Biotechnology, Santa Cruz, CA, USA), 4-hydroxy-2-nonenal (4HNE), Nox2 (EMD Millipore, Burlington, MA, USA), and Hmox1 (Proteintech, Rosemont, IL, USA). Blots were visualized using an Odyssey system (LI-COR Biosciences) and quantified using ImageJ. Nuclear and cytosolic extractions were tested for purity against H3 and GAPDH [39 (link)]. Mitochondrial extractions were also tested for purity with Vdac1 and GAPDH. In addition to consistently loading the same amount of total protein per well, values were further normalized by correcting with the densitometry values of Ponceau S staining [41 (link)]. Three Western blots were run per protein to include all available biological replicates. All blots contained no less than 2 representative samples per group.
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10

N-Nitrosodiethylamine-Induced Liver Cancer Protocol

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N-Nitrosodiethylamine (DEN, Cat:N0258), GoTaq Green Master Mix (Cat:M712B) were purchased from Sigma Aldrich and Promega respectively. TRIzol reagent (Cat:15596026), Verso c-DNA synthesis kit (Cat:AB1453A) were purchased from Thermo Fisher Scientific, Inc.(USA). Primary antibodies β-Catenin (Cat: SC-7963), Wnt3 (Cat: ab50341), PCNA (Cat: SC-56), Gli1 (Cat: SC-20687), Gli2 (Cat: SC-28674), sFRP1 (Cat: ab126613), MMP9 (Cat: SC-393859), GSK3β (Cat: SC-9166), Shh (Cat: SC-9024), CyclinD1(Cat:SC-20044), CyclinB1(Cat:SC-752) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). A horseradish peroxidase (HRP) conjugated goat anti- rabbit IgG, goat anti-mouse IgG secondary antibodies (Cat: ab97200 and ab97265 respectively), Rabbit Specific HRP/DAB (ABC-IHC) Kit (Cat: ab64261) were purchased from Abcam.
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